mRNA_Ecto-sp13_S_contig72779.18429.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72779.18429.1
Unique NamemRNA_Ecto-sp13_S_contig72779.18429.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72779.18429.1 vs. uniprot
Match: D7FJT7_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 5.400e-22
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 QVVPDSDAWRRLRHLLSSSDTDVRGKTCRVILRVTTGNKEQSRAVIEAGIVPVLIQCVADEDPD 192
            +V PDSDAWRRLRHLLSSS+T+VR  TC+VI R+T GNKEQ+RA+IEAGIVP LIQ ++D +PD
Sbjct:  556 EVDPDSDAWRRLRHLLSSSNTEVRENTCQVIRRITLGNKEQTRAMIEAGIVPALIQLLSDLNPD 619
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BLAST of mRNA_Ecto-sp13_S_contig72779.18429.1 vs. uniprot
Match: D7FJT9_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT9_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.240e-20
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 QVVPDSDAWRRLRHLLSSSDTDVRGKTCRVILRVTTGNKEQSRAVIEAGIVPVLIQCVADEDPD 192
            +VVP SDAWRRLR LLSSSD  VR KTC +I +VT  NKEQSRA IEAGIVPVLIQ +AD +PD
Sbjct:  739 KVVPASDAWRRLRDLLSSSDPKVREKTCEIIHKVTRCNKEQSRAAIEAGIVPVLIQLLADGNPD 802
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BLAST of mRNA_Ecto-sp13_S_contig72779.18429.1 vs. uniprot
Match: D7FJT8_ECTSI (Importin alpha-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT8_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.740e-19
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 QVVPDSDAWRRLRHLLSSSDTDVRGKTCRVILRVTTGNKEQSRAVIEAGIVPVLIQCVADEDP 189
            +VVPDS  W+RL+HLLSSSDT+V  K CRVI R+T+GNKEQ+RA IEAGI+PVLIQ + + +P
Sbjct:  657 KVVPDSHGWQRLQHLLSSSDTEVCEKACRVIHRITSGNKEQARAAIEAGIIPVLIQLLPNANP 719
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72779.18429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJT7_ECTSI5.400e-2271.88Importin alpha-1 subunit (Karyopherin alpha-1 subu... [more]
D7FJT9_ECTSI4.240e-2073.44Importin alpha-1 subunit (Karyopherin alpha-1 subu... [more]
D7FJT8_ECTSI2.740e-1966.67Importin alpha-like protein n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72779contigEcto-sp13_S_contig72779:233..424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score96.7
Seed ortholog evalue4.3e-18
Seed eggNOG ortholog2880.D7FJT7
Model size192
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.nuclear import signal receptor activity
EggNOG OGsCOG5064@1,KOG0166@2759
Cds size192
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463995.7206728-CDS-Ecto-sp13_S_contig72779:232..4241681463995.7206728-CDS-Ecto-sp13_S_contig72779:232..424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72779 233..424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72779.18429.1prot_Ecto-sp13_S_contig72779.18429.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72779 233..424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72779.18429.1

>prot_Ecto-sp13_S_contig72779.18429.1 ID=prot_Ecto-sp13_S_contig72779.18429.1|Name=mRNA_Ecto-sp13_S_contig72779.18429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
QVVPDSDAWRRLRHLLSSSDTDVRGKTCRVILRVTTGNKEQSRAVIEAGI
VPVLIQCVADEDPD
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mRNA from alignment at Ecto-sp13_S_contig72779:233..424-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72779.18429.1 ID=mRNA_Ecto-sp13_S_contig72779.18429.1|Name=mRNA_Ecto-sp13_S_contig72779.18429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72779:233..424- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCGTTCCTGACTCCGATGCATGGCGGCGGCTCCGACATCTGCTCAG
CTCGTCGGATACTGATGTCCGCGGGAAGACTTGCCGGGTCATCCTCAGGG
TCACGACGGGCAACAAGGAGCAGTCTCGGGCCGTGATCGAGGCCGGCATC
GTACCTGTCCTCATCCAGTGCGTTGCCGATGAGGATCCCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72779:233..424-

>mRNA_Ecto-sp13_S_contig72779.18429.1 ID=mRNA_Ecto-sp13_S_contig72779.18429.1|Name=mRNA_Ecto-sp13_S_contig72779.18429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72779:233..424- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCGTTCCTGACTCCGATGCATGGCGGCGGCTCCGACATCTGCTCAG
CTCGTCGGATACTGATGTCCGCGGGAAGACTTGCCGGGTCATCCTCAGGG
TCACGACGGGCAACAAGGAGCAGTCTCGGGCCGTGATCGAGGCCGGCATC
GTACCTGTCCTCATCCAGTGCGTTGCCGATGAGGATCCCGAC
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