mRNA_Ecto-sp13_S_contig7275.18425.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7275.18425.1
Unique NamemRNA_Ecto-sp13_S_contig7275.18425.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7275.18425.1 vs. uniprot
Match: D7FSJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ0_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 1.370e-93
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 2 
Query:    2 SDMALYKSPVPGTKKVRLGASTCVSALPSELVGILLENAAMLGPDYIVDRQELLETFSSGVNTGEGLADSAARAEGEGPKHDTAVYWFSCTHKRQRICRDFVILRCFRPLPGSGGVIAYSSVDHPGLPPCPDYVRGKLDVSGFVILPSPQE 454
            SDMALYKSPV GTKKVRLGASTCVSALPSELVGILLENAAMLGPDYIVDRQELLETFSSGVNTGEGLAD+AARAEGEGPKHDTAVYWFSCTHKRQRICRDFVILRCFRPLPGSGGVIAYSSVDHPGLPPCPDYVRGKLDVSGFVILPSPQE
Sbjct:  480 SDMALYKSPVAGTKKVRLGASTCVSALPSELVGILLENAAMLGPDYIVDRQELLETFSSGVNTGEGLADAAARAEGEGPKHDTAVYWFSCTHKRQRICRDFVILRCFRPLPGSGGVIAYSSVDHPGLPPCPDYVRGKLDVSGFVILPSPQE 630
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BLAST of mRNA_Ecto-sp13_S_contig7275.18425.1 vs. uniprot
Match: A0A6H5K079_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K079_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 1.110e-91
Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 2 
Query:    2 SDMALYKSPVPGTKKVRLGASTCVSALPSELVGILLENAAMLGPDYIVDRQELLETFSSGVNTGEGLADSAARAEGEGPKHDTAVYWFSCTHKRQRICRDFVILRCFRPLPGSGGVIAYSSVDHPGLPPCPDYVRGKLDVSGFVILPSPQE 454
            SDMALYKSPV GTKKVRLGASTCVSALPSELVGILLENAAMLGPDYIVDRQELLETFSSGVNTGEGLAD+AARA GEGPKHDTAVYWFSCTHKRQRICRDFVILRCFRPLPGSGGVIAYSSVDHPGLPPCPDYVRGKLDVSGFVILPSPQE
Sbjct:  810 SDMALYKSPVAGTKKVRLGASTCVSALPSELVGILLENAAMLGPDYIVDRQELLETFSSGVNTGEGLADAAARAAGEGPKHDTAVYWFSCTHKRQRICRDFVILRCFRPLPGSGGVIAYSSVDHPGLPPCPDYVRGKLDVSGFVILPSPQE 960
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BLAST of mRNA_Ecto-sp13_S_contig7275.18425.1 vs. uniprot
Match: A0A835YHQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ7_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.690e-46
Identity = 86/162 (53.09%), Postives = 109/162 (67.28%), Query Frame = 2 
Query:    5 DMALYKSPVPGTKKVRLGASTCVSALPSELVGILLENAAMLGPDYIVDRQELLETFSSGVNTG-------EGLADSAARAEGEGPKHDTAVYWFSCTHKRQRICRDFVILRCFRPLPG---------SGGVIAYSSVDHPGLPPCPDYVRGKLDVSGFVILP 442
            DMALYK P+P T++VRLGAS  V A P EL+G+LLE+AAMLGPDY+VD QE++ET SS   T                    +   HDTA+ WFSCTH+RQR+ RDFV+LRC+RPLP           GG+I+Y+SVDHP  PP P YVRG++++ GFV+LP
Sbjct:  234 DMALYKWPIPRTRRVRLGASATVRAAPPELLGLLLESAAMLGPDYVVDGQEMIETLSSTAGTAGXXXXXXXXXXXXXXXXXADAGAHDTAIIWFSCTHRRQRMRRDFVVLRCYRPLPSIATGGGTGSGGGLISYASVDHPAFPPGPAYVRGRIEMCGFVVLP 395
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7275.18425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSJ0_ECTSI1.370e-9398.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K079_9PHAE1.110e-9198.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHQ7_9STRA2.690e-4653.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7275contigEcto-sp13_S_contig7275:4761..7049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score305.1
Seed ortholog evalue2.7e-80
Seed eggNOG ortholog2880.D7FSJ0
Model size666
KEGG koko:K10779
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.lipid binding
EggNOG OGsKOG2761@1,KOG2761@2759
EC3.6.4.12
Cds size657
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463995.4421802-CDS-Ecto-sp13_S_contig7275:4760..49981681463995.4421802-CDS-Ecto-sp13_S_contig7275:4760..4998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7275 4761..4998 -
1681463995.4550142-CDS-Ecto-sp13_S_contig7275:5476..56161681463995.4550142-CDS-Ecto-sp13_S_contig7275:5476..5616Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7275 5477..5616 -
1681463995.4648948-CDS-Ecto-sp13_S_contig7275:6295..64241681463995.4648948-CDS-Ecto-sp13_S_contig7275:6295..6424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7275 6296..6424 -
1681463995.484359-CDS-Ecto-sp13_S_contig7275:6892..70421681463995.484359-CDS-Ecto-sp13_S_contig7275:6892..7042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7275 6893..7042 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463995.4987175-UTR-Ecto-sp13_S_contig7275:7042..70491681463995.4987175-UTR-Ecto-sp13_S_contig7275:7042..7049Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7275 7043..7049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7275.18425.1prot_Ecto-sp13_S_contig7275.18425.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7275 4761..7042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7275.18425.1

>prot_Ecto-sp13_S_contig7275.18425.1 ID=prot_Ecto-sp13_S_contig7275.18425.1|Name=mRNA_Ecto-sp13_S_contig7275.18425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=219bp
MALYKSPVPGTKKVRLGASTCVSALPSELVGILLENAAMLGPDYIVDRQE
LLETFSSGVNTGEGLADSAARAEGEGPKHDTAVYWFSCTHKRQRICRDFV
ILRCFRPLPGSGGVIAYSSVDHPGLPPCPDYVRGKLDVSGFVILPSPQEE
GGGNGNGNDNDDDETSLHHSDAEHNRRGGPRRKKRQRLRGGKGGGAAAAA
AAGRRRSRSSASAIGDYAD
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mRNA from alignment at Ecto-sp13_S_contig7275:4761..7049-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7275.18425.1 ID=mRNA_Ecto-sp13_S_contig7275.18425.1|Name=mRNA_Ecto-sp13_S_contig7275.18425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2289bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7275:4761..7049- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGACATGGCGCTGTACAAGAGTCCCGTCCCCGGCACGAAGAAGGTTC
GGCTGGGAGCGAGCACGTGCGTCAGCGCGCTGCCTTCGGAGCTGGTGGGA
ATCCTCCTCGAGAACGCGGCCATGCTGGGACCGGACTACATCGTCGACCG
GCAGGAGGTGAGGAAGTGGGTGGGAAACCGTGATGGCTCATTTTCGTAAG
TAGATGCGAGAAAATTTACTGCGAAGACTTAGACTTGAAACAAATCCACT
TCGGACGGGTGGTCTTTCAGTGATTGCGTGTGTATTTTCTAAATCAGAGA
TTATTTTCTAAATCACTCGGTGGTGTGTTGATGAGAAATAAAATGATTTT
TCCACTCATTGAAGTATTTCACCACATCCCGTTCGAATTTCGGTGTATCT
CGAATGGGTTGTCTCTCTGTGTGTGTATTAATTTTTCCTGGATTCCTTCC
AACGGGGCTAGTATCGTTGCCAGGGAGTGTGGGGCGAAATCATGTGCTCG
CTCTTGCCGTAGCCGGGTATCGGCGTTGTACTCATTTTTTTGACGAACGA
TGGATGGTTTTGCGGTGCGTATGACAGCAGTGCGCTTTTGTTGTTGTTGT
TTACCCGCTGTGTAAATACGCTCAGCTGCTGGAGACGTTCAGCTCCGGCG
TGAACACGGGGGAAGGGCTGGCGGATTCCGCGGCGAGGGCGGAGGGCGAA
GGGCCGAAGCACGACACAGCCGTCTACTGGTTCAGCTGCACTCACAAGCG
ACAGGTACAGTGTAAAGTGTGCATGGGTGTCTCAGTGTCTTACCTACACC
GACCTTTTTGGGTGGTGGCACACGATGTAGGATCCCGTAAGGGTGTTGGT
GTTATACCAGGTGTCTACCTTTTGTTAGGCCGACTTTGTGGTTCGTGACG
CCTTTTGTTGAAGACGAGGATGTGGTGGATCTGCCGCCTGCCGTGAAGGG
GGCGGTAAGGGTAGTTTACCACCGGGTGGGGGCAGGCACGGCATGATTGC
GCGTATGCCCGGGTGTTTCCTTTCCCTATTTGGACTTCGCTGGAGAACAA
CGCTGCTGTTGCTGGCACTGGTGCTGTTGTTGCTGTGGTCGTGGGGGTGG
AATTTGCCTTCTTTTTTTGTGTCAGTAGACTTTCTGGCCTTCACTGCTCT
GTACCTTCATGTCACTGCTGTAGGTCGTGGCCACTAGTGAATATTATCTC
GTAGTAAAACAAGGGTCTACGTACAGGAGGCAAAGCTTTGCAGACGATGC
TGGCGATCGGGCGGCTGTGCACGTGCGACCTTCGATCGTCAACGCCAACG
CACACTTTGATTCCGTATAGACCACCCTCACTCCTCTCCCCCCTCGCCAT
TTCACTCTCCCGTGTGCGATCATCGCACCTCTTTTTGTGCGTGGTGCGTG
GTCTTCGTCGCGCCCCTTTTTCTTTTGCTTCAGCGCATCTGCCGAGATTT
CGTTATCCTGCGCTGCTTCCGCCCGCTGCCGGGATCCGGCGGGGTCATCG
CCTACTCTTCCGTCGACCACCCCGGCCTACCACCGTGCCCGGACTACGTC
CGCGGCAAGCTTGACGTCTCGGGGTGAGCATAAATTTCTTGGAAAGTTTC
GTGCGGTTCGGATTTTTCAACAACGTATTGAGGGGTAGGGTTGCTGGATT
ACGTGTTTCGTGCCTTTTTTAGTGTTCCCCGCTAAACCAGCTACTGCTGC
ATATAGAGTAAAACGTATATGTAGCAAAATGAATTAAAGGAATCGCGCTC
CAAGTGCATTGATCAAGTCAAGACGGCGCCGTTGATTGCGGCAACCGCAC
CAGGCCGGCAGTGTCATCAAGCCGAGACCGACACAAAACGCCTCAATCAT
TATTCTCCCTCCGTCCCTTCGTGTCTGCCGCCGTCCGCCGCTTCTAGCCC
TCGTGTTCCCCCTATTTCCTGACCACACCCTCGTGAACCGCGGCGCTTGT
CGTTTTCGTCTTCTTCGCCCCCTTTCCTCCCTTGTGCGGCGCTCGTTCTT
TCTTGGCCGTATAAAACGCTCCGCTCGCGACCAACGACAACAACAACACA
GGTTCGTGATTCTGCCGAGCCCCCAAGAGGAGGGTGGCGGCAACGGCAAC
GGCAACGATAACGACGACGACGAGACCTCCCTTCACCACTCGGACGCCGA
ACACAACCGCCGCGGCGGGCCTCGCCGAAAGAAGCGCCAGCGTTTGCGGG
GAGGCAAAGGTGGAGGGGCGGCGGCGGCGGCAGCGGCGGGGCGCCGCCGC
TCTCGGTCGTCTGCCTCGGCCATCGGCGACTACGCAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7275:4761..7049-

>mRNA_Ecto-sp13_S_contig7275.18425.1 ID=mRNA_Ecto-sp13_S_contig7275.18425.1|Name=mRNA_Ecto-sp13_S_contig7275.18425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7275:4761..7049- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTGTACAAGAGTCCCGTCCCCGGCACGAAGAAGGTTCGGCTGGG
AGCGAGCACGTGCGTCAGCGCGCTGCCTTCGGAGCTGGTGGGAATCCTCC
TCGAGAACGCGGCCATGCTGGGACCGGACTACATCGTCGACCGGCAGGAG
CTGCTGGAGACGTTCAGCTCCGGCGTGAACACGGGGGAAGGGCTGGCGGA
TTCCGCGGCGAGGGCGGAGGGCGAAGGGCCGAAGCACGACACAGCCGTCT
ACTGGTTCAGCTGCACTCACAAGCGACAGCGCATCTGCCGAGATTTCGTT
ATCCTGCGCTGCTTCCGCCCGCTGCCGGGATCCGGCGGGGTCATCGCCTA
CTCTTCCGTCGACCACCCCGGCCTACCACCGTGCCCGGACTACGTCCGCG
GCAAGCTTGACGTCTCGGGGTTCGTGATTCTGCCGAGCCCCCAAGAGGAG
GGTGGCGGCAACGGCAACGGCAACGATAACGACGACGACGAGACCTCCCT
TCACCACTCGGACGCCGAACACAACCGCCGCGGCGGGCCTCGCCGAAAGA
AGCGCCAGCGTTTGCGGGGAGGCAAAGGTGGAGGGGCGGCGGCGGCGGCA
GCGGCGGGGCGCCGCCGCTCTCGGTCGTCTGCCTCGGCCATCGGCGACTA
CGCAGAC
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