mRNA_Ecto-sp13_S_contig72744.18423.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72744.18423.1
Unique NamemRNA_Ecto-sp13_S_contig72744.18423.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72744.18423.1 vs. uniprot
Match: UPI00140DA057 (SOS response-associated peptidase family protein n=1 Tax=Marinobacter salicampi TaxID=435907 RepID=UPI00140DA057)

HSP 1 Score: 91.3 bits (225), Expect = 2.860e-21
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 PSSAEFVAMWLTADGQVPDMVSRYLSKPQVTVPLRVASVSTFKRGTVSRDSEMLSAD 171
            P+  +FV  WL +DGQVPDMVSRYL++PQ+TVPLRVA VSTFKRGTVS DSEMLSAD
Sbjct:  175 PADQKFVDQWLNSDGQVPDMVSRYLTQPQLTVPLRVAHVSTFKRGTVSLDSEMLSAD 231
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72744.18423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00140DA0572.860e-2177.19SOS response-associated peptidase family protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72744contigEcto-sp13_S_contig72744:504..677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size174
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463995.3474557-CDS-Ecto-sp13_S_contig72744:503..6531681463995.3474557-CDS-Ecto-sp13_S_contig72744:503..653Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72744 504..653 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463995.3604145-UTR-Ecto-sp13_S_contig72744:653..6771681463995.3604145-UTR-Ecto-sp13_S_contig72744:653..677Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig72744 654..677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72744.18423.1prot_Ecto-sp13_S_contig72744.18423.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72744 504..653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72744.18423.1

>prot_Ecto-sp13_S_contig72744.18423.1 ID=prot_Ecto-sp13_S_contig72744.18423.1|Name=mRNA_Ecto-sp13_S_contig72744.18423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MWLTADGQVPDMVSRYLSKPQVTVPLRVASVSTFKRGTVSRDSEMLSAD*
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mRNA from alignment at Ecto-sp13_S_contig72744:504..677-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72744.18423.1 ID=mRNA_Ecto-sp13_S_contig72744.18423.1|Name=mRNA_Ecto-sp13_S_contig72744.18423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72744:504..677- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGAGTAGTGCGGAATTTGTCGCCATGTGGCTGACTGCTGATGGCCAGGT
GCCTGATATGGTCAGTCGTTATCTATCGAAGCCTCAGGTCACCGTTCCCT
TGCGTGTTGCCAGCGTCAGTACATTCAAGCGTGGAACCGTTTCTCGCGAT
TCGGAGATGCTTTCGGCGGACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72744:504..677-

>mRNA_Ecto-sp13_S_contig72744.18423.1 ID=mRNA_Ecto-sp13_S_contig72744.18423.1|Name=mRNA_Ecto-sp13_S_contig72744.18423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72744:504..677- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGCTGACTGCTGATGGCCAGGTGCCTGATATGGTCAGTCGTTATCT
ATCGAAGCCTCAGGTCACCGTTCCCTTGCGTGTTGCCAGCGTCAGTACAT
TCAAGCGTGGAACCGTTTCTCGCGATTCGGAGATGCTTTCGGCGGACTGA
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