mRNA_Ecto-sp13_S_contig72710.18418.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72710.18418.1
Unique NamemRNA_Ecto-sp13_S_contig72710.18418.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72710.18418.1 vs. uniprot
Match: D7FUT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT6_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 5.800e-30
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 QLLRIRTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQKVL 171
            QLLRIRTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQK+L
Sbjct: 1438 QLLRIRTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQKIL 1494
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BLAST of mRNA_Ecto-sp13_S_contig72710.18418.1 vs. uniprot
Match: A0A6H5L3G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G7_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.750e-29
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 QLLRIRTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQKVL 171
            QLLRI THNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQK+L
Sbjct: 1508 QLLRISTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQKIL 1564
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BLAST of mRNA_Ecto-sp13_S_contig72710.18418.1 vs. uniprot
Match: A0A4D9CWC9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWC9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.850e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 QLLRIRTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQKVL 171
            +LL+ RTHN RRWSHVF  GE EF+ +   PGP ++SLCQP +LP + DY+PT + L
Sbjct: 1014 ELLQKRTHNHRRWSHVFPPGEVEFKHS---PGPNWKSLCQPAILPLTTDYLPTPEQL 1067
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BLAST of mRNA_Ecto-sp13_S_contig72710.18418.1 vs. uniprot
Match: K8YTK9_NANGC (Dep domain containing 5 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YTK9_NANGC)

HSP 1 Score: 67.8 bits (164), Expect = 7.850e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 QLLRIRTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQKVL 171
            +LL+ RTHN RRWSHVF  GE EF+ +   PGP ++SLCQP +LP + DY+PT + L
Sbjct: 1062 ELLQKRTHNHRRWSHVFPPGEVEFKHS---PGPNWKSLCQPAILPLTTDYLPTPEQL 1115
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BLAST of mRNA_Ecto-sp13_S_contig72710.18418.1 vs. uniprot
Match: W7T8Z9_9STRA (Dep domain containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T8Z9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.860e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 QLLRIRTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQKVL 171
            +LL+ RTHN RRWSHVF  GE EF+ +   PGP ++SLCQP +LP + DY+PT + L
Sbjct: 1248 ELLQKRTHNHRRWSHVFPPGEVEFKHS---PGPNWKSLCQPAILPLTTDYLPTPEQL 1301
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BLAST of mRNA_Ecto-sp13_S_contig72710.18418.1 vs. uniprot
Match: A0A7S3Y3Y5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3Y5_HETAK)

HSP 1 Score: 66.6 bits (161), Expect = 1.980e-11
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 LLRIRTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQ 162
            LL  RTHNRRRWSHVF  GE EF+    +PGP Y+SLC P  LP ++DY P++
Sbjct:  132 LLAQRTHNRRRWSHVFPLGEVEFKR---IPGPNYKSLCMPACLPLTVDYYPSE 181
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BLAST of mRNA_Ecto-sp13_S_contig72710.18418.1 vs. uniprot
Match: A0A7S2RWH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RWH1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.050e-11
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 QLLRIRTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQKVL 171
            ++L  RTHNRRRWSHVF +GE EF+      GP ++SLCQP +LP +ID  P+ K L
Sbjct:   80 EVLAKRTHNRRRWSHVFPQGEIEFKRH---AGPNWKSLCQPAILPVTIDIYPSPKEL 133
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BLAST of mRNA_Ecto-sp13_S_contig72710.18418.1 vs. uniprot
Match: A0A7S0GG63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GG63_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.420e-10
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 QLLRIRTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQKVL 171
            ++L  R++NRRRWSHVF  GE EF+      GP ++SLCQP +LP +IDY P+QK L
Sbjct:  156 EILAKRSYNRRRWSHVFPLGEVEFKR---QAGPNWKSLCQPAVLPLTIDYHPSQKEL 209
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BLAST of mRNA_Ecto-sp13_S_contig72710.18418.1 vs. uniprot
Match: K0TPQ1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPQ1_THAOC)

HSP 1 Score: 61.6 bits (148), Expect = 1.170e-9
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 QLLRIRTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQKVL 171
            ++L  RTHNRRRWSHVF  GE EF+      GP ++SLCQP +LP +ID+ P+++ L
Sbjct: 1568 EVLAKRTHNRRRWSHVFPLGEDEFKRH---AGPNWKSLCQPAVLPMTIDFHPSEQEL 1621
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BLAST of mRNA_Ecto-sp13_S_contig72710.18418.1 vs. uniprot
Match: A0A6V2K027_9STRA (Hypothetical protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2K027_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.950e-9
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 QLLRIRTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPT 159
            ++L  RTHNRRRWSHVF  GE EF+      GP ++SLCQP +LP +ID+ P+
Sbjct:  100 EVLAKRTHNRRRWSHVFPTGEVEFKRH---AGPNWKSLCQPAVLPITIDFHPS 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72710.18418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FUT6_ECTSI5.800e-3098.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3G7_9PHAE3.750e-2996.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CWC9_9STRA7.850e-1256.14Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8YTK9_NANGC7.850e-1256.14Dep domain containing 5 n=1 Tax=Nannochloropsis ga... [more]
W7T8Z9_9STRA7.860e-1256.14Dep domain containing protein n=2 Tax=Nannochlorop... [more]
A0A7S3Y3Y5_HETAK1.980e-1158.49Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2RWH1_9STRA3.050e-1154.39Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S0GG63_9STRA2.420e-1054.39Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
K0TPQ1_THAOC1.170e-952.63Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A6V2K027_9STRA2.950e-954.72Hypothetical protein n=6 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72710contigEcto-sp13_S_contig72710:132..302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score119.8
Seed ortholog evalue4.2e-25
Seed eggNOG ortholog2880.D7FUT6
Preferred nameIML1
Model size171
KEGG koko:K20404
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006950,GO:0006995,GO:0007154,GO:0008047,GO:0008150,GO:0009267,GO:0009605,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010506,GO:0010508,GO:0010646,GO:0010648,GO:0016020,GO:0016241,GO:0019222,GO:0019898,GO:0023051,GO:0023057,GO:0030234,GO:0030695,GO:0031090,GO:0031312,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032007,GO:0032991,GO:0033043,GO:0033554,GO:0034198,GO:0035859,GO:0042594,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043562,GO:0044087,GO:0044088,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051128,GO:0051336,GO:0051345,GO:0051716,GO:0060589,GO:0065007,GO:0065009,GO:0071496,GO:0097042,GO:0098588,GO:0098772,GO:0098805,GO:0098852,GO:1902115,GO:1902531,GO:1902532,GO:1903432,GO:1904262,GO:1990130,GO:1990928,GO:2000785
Exons1
EggNOG free text desc.negative regulation of TOR signaling
EggNOG OGsKOG3572@1,KOG3572@2759
Cds size171
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463995.0641513-CDS-Ecto-sp13_S_contig72710:131..3021681463995.0641513-CDS-Ecto-sp13_S_contig72710:131..302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72710 132..302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72710.18418.1prot_Ecto-sp13_S_contig72710.18418.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72710 132..302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72710.18418.1

>prot_Ecto-sp13_S_contig72710.18418.1 ID=prot_Ecto-sp13_S_contig72710.18418.1|Name=mRNA_Ecto-sp13_S_contig72710.18418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
QLLRIRTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDY
VPTQKVL
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mRNA from alignment at Ecto-sp13_S_contig72710:132..302-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72710.18418.1 ID=mRNA_Ecto-sp13_S_contig72710.18418.1|Name=mRNA_Ecto-sp13_S_contig72710.18418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72710:132..302- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTTCTGAGAATCCGCACGCACAACCGGCGGCGCTGGAGCCACGTGTT
CTCCCGAGGGGAGACGGAGTTCCAGACGACGGATACCATGCCGGGCCCGA
TTTATCGCTCCCTGTGCCAACCGGTTCTGCTGCCGACATCGATCGACTAT
GTTCCGACGCAGAAGGTGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72710:132..302-

>mRNA_Ecto-sp13_S_contig72710.18418.1 ID=mRNA_Ecto-sp13_S_contig72710.18418.1|Name=mRNA_Ecto-sp13_S_contig72710.18418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72710:132..302- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTTCTGAGAATCCGCACGCACAACCGGCGGCGCTGGAGCCACGTGTT
CTCCCGAGGGGAGACGGAGTTCCAGACGACGGATACCATGCCGGGCCCGA
TTTATCGCTCCCTGTGCCAACCGGTTCTGCTGCCGACATCGATCGACTAT
GTTCCGACGCAGAAGGTGTTG
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