mRNA_Ecto-sp13_S_contig7270.18416.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7270.18416.1
Unique NamemRNA_Ecto-sp13_S_contig7270.18416.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7270.18416.1 vs. uniprot
Match: A0A6H5KQD4_9PHAE (Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.280e-22
Identity = 56/81 (69.14%), Postives = 65/81 (80.25%), Query Frame = -1 
Query:    1 GEVIDELLAA-DDDVERQEKQKYPTAHFAVERCGAEGDRGSYNNAFK--EAEFTRALCEDGKSVGSTAAAKDRGVAKKRII 234
            G  IDELLAA D+DVER +K+KYP   FAV+R GA G RGSY+NAFK   AEFTRALCEDGK +G+T AAK +G+AKKRII
Sbjct:  985 GGAIDELLAANDEDVERSKKRKYPEPGFAVDRSGAVGGRGSYSNAFKVKAAEFTRALCEDGKPLGNTGAAKVQGIAKKRII 1065
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BLAST of mRNA_Ecto-sp13_S_contig7270.18416.1 vs. uniprot
Match: A0A6H5JVM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM1_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.510e-20
Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = -1 
Query:    1 GEVIDELLAADDDVERQEKQKYPTAHFAVERCGAEGDRGSYNNAFK--EAEFTRALCEDGKSVGSTAAAKDRGVAKKRII 234
            GE ID+LLAA++     +K+KYP   FAV+R GA G RGSY+NAFK   AEFTRALCEDGK VG+T AAK  GV+KKRII
Sbjct:   31 GEAIDKLLAANN-----KKRKYPEPGFAVDRSGAVGGRGSYSNAFKVKAAEFTRALCEDGKPVGNTGAAKVLGVSKKRII 105
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BLAST of mRNA_Ecto-sp13_S_contig7270.18416.1 vs. uniprot
Match: A0A6H5KEE8_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE8_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.190e-10
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = -1 
Query:    1 GEVIDELLAADDDVERQEKQKYPTAHFAVERCGAEGDRGSYNNAFK--EAEFTRALCEDGKSVGSTAAAKDRGVAKKRII 234
            GE IDE+LAA++   +  K+KYP   F  ER GA G +GSY   FK     FTR +CEDGK VG++ AAK   V ++RI+
Sbjct:   31 GEAIDEVLAANNPDSK--KRKYPEPGFPTERSGAVGKKGSYPVGFKLKAVAFTRVVCEDGKPVGNSGAAKVLDVPRRRIV 108
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BLAST of mRNA_Ecto-sp13_S_contig7270.18416.1 vs. uniprot
Match: A0A6H5KVR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 9.270e-9
Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = -1 
Query:    1 GEVIDELLAADDDVERQEKQKYPTAHFAVERCGAEGDRGSY--NNAFKEAEFTRALCEDGKSVGSTAAAKDRGVAKKRII 234
            GE IDE+LAA+D   +  K+K P   F  ER GA G +GSY   +  K   FTR +CEDGK V ++ AAK   V ++RI+
Sbjct:   92 GEAIDEMLAANDPDSK--KRKNPEPGFPTERSGAVGKKGSYPVGSKLKAVAFTRVVCEDGKPVRNSGAAKVLVVLRRRIV 169
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7270.18416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KQD4_9PHAE1.280e-2269.14Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A6H5JVM1_9PHAE4.510e-2065.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEE8_9PHAE1.190e-1048.75DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KVR1_9PHAE9.270e-946.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7270contigEcto-sp13_S_contig7270:403..762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size361
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.9661343-CDS-Ecto-sp13_S_contig7270:402..7621681463994.9661343-CDS-Ecto-sp13_S_contig7270:402..762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7270 403..762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7270.18416.1prot_Ecto-sp13_S_contig7270.18416.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7270 403..762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7270.18416.1

>prot_Ecto-sp13_S_contig7270.18416.1 ID=prot_Ecto-sp13_S_contig7270.18416.1|Name=mRNA_Ecto-sp13_S_contig7270.18416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
NDALFGYPAILCRCSASYRLAVLAEGSRKFCLLERVVVASSVAFRPTSFH
CEVCRWVLLFLLAFDVIISGQQLVDDFSFSCSSYLRLRCACAKHPVCQWV
TPAAHRLLVVPAHWYRHIGT
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mRNA from alignment at Ecto-sp13_S_contig7270:403..762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7270.18416.1 ID=mRNA_Ecto-sp13_S_contig7270.18416.1|Name=mRNA_Ecto-sp13_S_contig7270.18416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7270:403..762+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATGATGCGCTTTTTGGCTACCCCGCGATCCTTTGCCGCTGCAGTGCTTC
CTACAGACTTGCCGTCCTCGCAGAGGGCTCGCGTAAATTCTGCCTCCTTG
AACGCGTTGTTGTAGCTTCCTCTGTCGCCTTCCGCCCCACATCTTTCCAC
TGCGAAGTGTGCCGTTGGGTACTTCTGTTTCTCTTGGCGTTCGACGTCAT
CATCAGCGGCCAACAGCTCGTCGATGACTTCTCCTTTTCCTGTTCGTCTT
ATTTGCGGCTGAGATGTGCGTGTGCAAAACACCCTGTGTGTCAGTGGGTT
ACGCCTGCCGCACATCGTCTGCTTGTTGTACCGGCACACTGGTACCGGCA
CATTGGTACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7270:403..762+

>mRNA_Ecto-sp13_S_contig7270.18416.1 ID=mRNA_Ecto-sp13_S_contig7270.18416.1|Name=mRNA_Ecto-sp13_S_contig7270.18416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7270:403..762+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATGATGCGCTTTTTGGCTACCCCGCGATCCTTTGCCGCTGCAGTGCTTC
CTACAGACTTGCCGTCCTCGCAGAGGGCTCGCGTAAATTCTGCCTCCTTG
AACGCGTTGTTGTAGCTTCCTCTGTCGCCTTCCGCCCCACATCTTTCCAC
TGCGAAGTGTGCCGTTGGGTACTTCTGTTTCTCTTGGCGTTCGACGTCAT
CATCAGCGGCCAACAGCTCGTCGATGACTTCTCCTTTTCCTGTTCGTCTT
ATTTGCGGCTGAGATGTGCGTGTGCAAAACACCCTGTGTGTCAGTGGGTT
ACGCCTGCCGCACATCGTCTGCTTGTTGTACCGGCACACTGGTACCGGCA
CATTGGTACC
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