mRNA_Ecto-sp13_S_contig7262.18403.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7262.18403.1
Unique NamemRNA_Ecto-sp13_S_contig7262.18403.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7262.18403.1 vs. uniprot
Match: D7FXV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV0_ECTSI)

HSP 1 Score: 280 bits (717), Expect = 2.100e-86
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 2 
Query:   56 TGGLRCRGVGVGDAGRDTFRRQALSAVLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAGGVSCMEFDSVGWQLAVGGENVTVYDFDRYLPENQQVKRTLESGVRAYLQPTDGIQTKRTVSCVRWNPANGDQ 472
            TGGLRCRGVGVGDAGRDTFRRQALS VLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAGGVSCMEFDSVGWQLAVGGENVTVYDFDRYLPENQQVKRTLESGVRAYLQPTDGIQTKRTVSCVRWNPANGDQ
Sbjct:  277 TGGLRCRGVGVGDAGRDTFRRQALSTVLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAGGVSCMEFDSVGWQLAVGGENVTVYDFDRYLPENQQVKRTLESGVRAYLQPTDGIQTKRTVSCVRWNPANGDQ 415
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BLAST of mRNA_Ecto-sp13_S_contig7262.18403.1 vs. uniprot
Match: A0A6H5JZC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC0_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 6.930e-66
Identity = 114/119 (95.80%), Postives = 115/119 (96.64%), Query Frame = 2 
Query:    2 PCRRRRGASSLFLSRRQWTGGLRCRGVGVGDAGRDTFRRQALSAVLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAGGVSCMEFDSVGWQLAVGGENVTVYDFDRYLPENQ 358
            PCRRRRGA SLFLSRRQ TGGLRCRGVGVGDAGRDTFRRQALS VLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAGGVSCMEFDSVGWQLAVGGENVTVYDFDRYLPE +
Sbjct:   91 PCRRRRGAPSLFLSRRQRTGGLRCRGVGVGDAGRDTFRRQALSTVLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAGGVSCMEFDSVGWQLAVGGENVTVYDFDRYLPEGE 209
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BLAST of mRNA_Ecto-sp13_S_contig7262.18403.1 vs. uniprot
Match: A0A225WNJ7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WNJ7_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.520e-8
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 2 
Query:  263 SCMEFDSVGWQLAVGGEN--VTVYDFDRYLPENQQVKRTLESGVRA--YLQPTDGIQTKRTVSCVRWNPANGDQLAVSYLNFDEVEVYDLTR 526
            SC+EFD  G  LA G  N  V +YDFD          R+L  G +    L P   I T   V+C+RWNP N D++A S++N +E+ V+DL +
Sbjct:  132 SCLEFDRPGVLLAAGASNGIVALYDFDDVF------HRSLNLGHKQDEVLHPIHTIFTPFEVACIRWNPLNEDEIACSFMNRNEIYVFDLRK 217
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7262.18403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXV0_ECTSI2.100e-8699.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZC0_9PHAE6.930e-6695.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225WNJ7_9STRA2.520e-840.22Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7262contigEcto-sp13_S_contig7262:201..2430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size573
Hectar predicted targeting categoryother localisation
Exons3
Cds size573
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.2516391-CDS-Ecto-sp13_S_contig7262:200..5521681463994.2516391-CDS-Ecto-sp13_S_contig7262:200..552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7262 201..552 +
1681463994.2722769-CDS-Ecto-sp13_S_contig7262:1516..16361681463994.2722769-CDS-Ecto-sp13_S_contig7262:1516..1636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7262 1517..1636 +
1681463994.2819088-CDS-Ecto-sp13_S_contig7262:2329..24301681463994.2819088-CDS-Ecto-sp13_S_contig7262:2329..2430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7262 2330..2430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7262.18403.1prot_Ecto-sp13_S_contig7262.18403.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7262 201..2430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7262.18403.1

>prot_Ecto-sp13_S_contig7262.18403.1 ID=prot_Ecto-sp13_S_contig7262.18403.1|Name=mRNA_Ecto-sp13_S_contig7262.18403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp
ALPPEARSVLPLPVPAAVDGGPTLPRRRSRRRRQGHLQAAGAVRGARQRA
QDPAAEDGLRVQLRDGLRGSEGAPGQPGPAGQDRGRRVVHGVRLRGMAAR
RRGRERHGVRLRPLPAREPASEAHTRVRGSGVPATYRRHPDQAHCVLRAL
EPGKRRSACRELPQLRRGGGVRPHAHPPRQAGHAGPNPPSR
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mRNA from alignment at Ecto-sp13_S_contig7262:201..2430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7262.18403.1 ID=mRNA_Ecto-sp13_S_contig7262.18403.1|Name=mRNA_Ecto-sp13_S_contig7262.18403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2230bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7262:201..2430+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTGCCGCCGGAGGCGCGGAGCGTCCTCCCTCTTCCTGTCCCGGCGGC
AGTGGACGGGGGGCCTACGCTGCCGCGGCGTCGGAGTCGGAGACGCCGGC
AGGGACACCTTCAGGCGGCAGGCGCTGTCCGCGGTGCTCGGCAGCGGGCT
CAGGACCCAGCGGCTGAGGATGGGTTGCGTGTCCAACTCAGGGACGGGCT
CCGGGGTAGTGAGGGGGCACCCGGCCAGCCAGGGCCTGCAGGGCAGGATC
GCGGGCGGCGTGTCGTGCATGGAGTTCGACTCCGTGGGATGGCAGCTCGC
CGTCGGGGGCGAGAACGTCACGGTGTACGACTTCGACCGCTACCTGCCCG
AGGTTCGTCGCGAATCGCACAGTACTATGTTGTATTTTGTGGATGGTCAT
GTCTAGTCTCCAGGTGCATGATTCCCAGGCTAATCATTGGTAGGTGTTTG
AAAGCGCCCATTGTTCCTGCGGCGCGGAAAAGGGCGTAATATCGTTGTTT
GAACGCGAAAACTGTTGTTTGAAAGCGTTGTTCTTTACTCCTGCGGCGCA
AAGGGTAGGTTTTGCTGAATATTACGGGGGGTCCGCTTCTTCTTAAGATT
CTGAGATTAGCAGGAAAATGCGAGAGACACGGCTGCCAAGAACACAACCC
ACAGCAGTTTTGGTCTTGCTGTACCGGCGAGGGCGGGGATTATTTGTGCT
TCGAAACATTTGAGCTCGTTCGTGACTTGAGCTACTCAATTGAACCGCAT
GTGAAACCCAGAGATGGCGATGGGGTGTACGATGTGGGGGGGCTACGGCC
ATGCATAAGTCTTGTTCCATATGCATGCCGTGAGAGGCGAAGAGATGGCA
CCCCCCCCTAGACCGGCGTTCAAAGCTCGATTGCTCCACAAACCAAGGGG
GTGCAGAAAGAGCCCGGGACGTTTACGGATAGCCCTTCGACGAGATGTTC
CCAATACCAACATATTTGGTGTTGGCACAAGCTTGGTTGTGGAGTAATCG
AGCTTTGAAAGTCGCTCTAGGGGGAGTGACATTTCTCCGCCTCTTACGGA
ATGCCACGGTCTGGTATACGGTACGGCACAGACAGGCTTGGTTGTTGTGA
GCCATCGAACTTTGAAAGTCGCTCTAGGGGGGAGTGACATCTCTCGCCTC
TTACGGGGCCTCACGGCGCTTCACGCTTGGTGTGTGCTAGCGTGGCCCGG
TGAGTCCCCGGCGTGCTCCAGTTCCGACGTTGTGGGGATGCGAGGGTAAC
GGTCTACCCGCTCAAGCCATGCAAAACATAAGAGTACGCCCCCCGCCATT
CTGCTCCCTCGCGCAGAACCAGCAAGTGAAGCGCACACTCGAGTCCGGGG
TTCGGGCGTACCTGCAACCTACCGACGGCATCCAGACCAAGCGCACTGTG
TCCTGCGTGCGCTGGAACCCGGCAAACGGAGATCAGGCAAGTTGATGTTG
TTGCCTTGGACGGTACATGGCTATTATCGTTTGTGGTACCACGGAAAGAC
ATGCAAGAGGTGTCTTACATGGTAAAATTTAGGGTTATTCGTGAAAATCG
AACGCGCCACCACTTCAGAACCTCTTGTTTTGGCCGAGGTACATTGTCCA
TGGGGTACTACTAACCCCACAGCGACTATATAGGTCTTAGTGAAGGCTTC
AGCTTTTTGACGGAGCACCTGTTCTTATGGCCAACTTCTGGGATTTTTTT
TTTTTCGGCGTAAGTTGGTAGCTGCTATGTTCGTAAGGGGAAGTTACAAG
TTACCCGCCGGTTGTGGTGTTGAGGACAAGAGCACGGTGCAGAGGGGGTT
CCACACTGCCGTATTACGGTCAGAATCATCAAGGTGTGCGCTAGCCATCT
GTGACATCACCACAACTTGGCAGCTTGGTAGTTCAGTTAGTAACCTCGCA
TTGTCTCCCGGCTCTGGGCTGTGGGTTTGAGTCCCTCTGGAGTTCAAACA
ACCCGAAGTTTGATTGTGAAAAGCGGCACATAGACGGGAGTACACCCGAC
GAAAAGGTAAGGGACTGCTTCCCCCCCCCCCTCCCCCCCCTCCCGCTGTA
TTCCGCTCGATGCCTCCTTCGTGTGCTCATGGCACGCCCAAAACACCAAC
ACCAACACCACCAACCACAACGGCACTAGCTTGCCGTGAGCTACCTCAAC
TTCGACGAGGTGGAGGTGTACGACCTCACGCGCATCCACCCCGACAGGCT
GGCCACGCCGGTCCTAACCCTCCTTCCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7262:201..2430+

>mRNA_Ecto-sp13_S_contig7262.18403.1 ID=mRNA_Ecto-sp13_S_contig7262.18403.1|Name=mRNA_Ecto-sp13_S_contig7262.18403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7262:201..2430+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTGCCGCCGGAGGCGCGGAGCGTCCTCCCTCTTCCTGTCCCGGCGGC
AGTGGACGGGGGGCCTACGCTGCCGCGGCGTCGGAGTCGGAGACGCCGGC
AGGGACACCTTCAGGCGGCAGGCGCTGTCCGCGGTGCTCGGCAGCGGGCT
CAGGACCCAGCGGCTGAGGATGGGTTGCGTGTCCAACTCAGGGACGGGCT
CCGGGGTAGTGAGGGGGCACCCGGCCAGCCAGGGCCTGCAGGGCAGGATC
GCGGGCGGCGTGTCGTGCATGGAGTTCGACTCCGTGGGATGGCAGCTCGC
CGTCGGGGGCGAGAACGTCACGGTGTACGACTTCGACCGCTACCTGCCCG
AGAACCAGCAAGTGAAGCGCACACTCGAGTCCGGGGTTCGGGCGTACCTG
CAACCTACCGACGGCATCCAGACCAAGCGCACTGTGTCCTGCGTGCGCTG
GAACCCGGCAAACGGAGATCAGCTTGCCGTGAGCTACCTCAACTTCGACG
AGGTGGAGGTGTACGACCTCACGCGCATCCACCCCGACAGGCTGGCCACG
CCGGTCCTAACCCTCCTTCCCGG
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