mRNA_Ecto-sp13_S_contig726.18399.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig726.18399.1
Unique NamemRNA_Ecto-sp13_S_contig726.18399.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig726.18399.1 vs. uniprot
Match: D8LC02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC02_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.970e-54
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 1 
Query:  265 MVEQDIIYGGLVAAAGLAVGAGMVALTEQAGVRSEERGALSYERKMKMQAMFMEDDVVEETDVDDVRYNMRKALRANQTEEELLALTADARKRAEEEADDGW 570
            MVEQDIIYGGLVA AGLAVGAGMVALTEQAGVRSEERGALSYERKMKMQAMFMEDDVVEETDVDDVRYNMRKALRANQTEEELLALTADARKRAEEEADDGW
Sbjct:    1 MVEQDIIYGGLVAVAGLAVGAGMVALTEQAGVRSEERGALSYERKMKMQAMFMEDDVVEETDVDDVRYNMRKALRANQTEEELLALTADARKRAEEEADDGW 102
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BLAST of mRNA_Ecto-sp13_S_contig726.18399.1 vs. uniprot
Match: A0A836CFV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.390e-11
Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:  229 QQQRRHARSSLTM-VEQDIIYGGLVAAAGLAVGAGMVALTEQAGVRSEERGALSYERKMKMQAMFMEDDVVEETDVDDVRYNMRKALRANQTEEELLALTA-DARKRAEEEADDGW 570
            QQQR  + +++ M ++Q+ I G      GLA+G G+VA TEQ GV++ ERG +      K+QA  +ED  +EE DV  V   MR AL+ ++TEEEL  L A     R++E  DDGW
Sbjct:   44 QQQRAGSSTAIAMEMDQNTIIGIAAGVGGLALGIGLVAFTEQQGVKTAERG-IDEGMANKLQAKLLEDFELEENDVTSVTDRMRAALKQDKTEEELAELAAKQLAARSKEREDDGW 158
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BLAST of mRNA_Ecto-sp13_S_contig726.18399.1 vs. uniprot
Match: K0TE04_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TE04_THAOC)

HSP 1 Score: 64.3 bits (155), Expect = 1.330e-8
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:  241 RHARSSLTMVEQDIIYGGLVAAAGLAVGAGMVALTEQAGVRSEERGA-LSYERKMKMQAMFMEDDVVEET-DVDDVRYNMRKAL-RANQTEEELLALTADARKRAEEEADDGW 570
            R  RSSL+MV+ +II GG +A  G+  G G+VA  E  G RS+ERG  LS +   ++    MED  V+   D+  +   +  AL  +   E+E L L+ + +KR  EEADDGW
Sbjct:   44 RRPRSSLSMVDTNIILGGGIAVGGVVAGIGLVAFAENMGERSKERGGGLSDDMATRITGGLMEDVEVDSVGDLSSLTDKLEAALMESGGAEQEQLQLSEEDKKRIAEEADDGW 156
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BLAST of mRNA_Ecto-sp13_S_contig726.18399.1 vs. uniprot
Match: A0A7S4ECZ2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECZ2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.350e-8
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1 
Query:  238 RRHARSS-LTMVEQDIIYGGLVAAAGLAVGAGMVALTEQAGVRSEERG--ALSYERKMKMQAMFMEDDVVEETDVDDVRYNMRKALRANQTEEELLALTADARKRAEEEADDGW 570
            RR A SS L M++  +I GG  A  GLAVG GM   +EQ   + E+RG  A+S   + KM AMFMED+V+ +T +DD    M  AL A + E    A+     ++     DDGW
Sbjct:   44 RRQASSSQLQMLDAAVIQGGAAAVGGLAVGLGMAWFSEQQVEQGEQRGSDAVSEATRAKMSAMFMEDEVLPDTTLDDTVSRMEAALAAAKGE---AAVEEKVEEKPASSIDDGW 154
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BLAST of mRNA_Ecto-sp13_S_contig726.18399.1 vs. uniprot
Match: A0A8J6C9X7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C9X7_DIALT)

HSP 1 Score: 55.1 bits (131), Expect = 1.570e-5
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:  265 MVEQDIIYGGLVAAAGLAVGAGMVALTEQAGVRSEERGALSYERKMKMQAMFMEDDVVEETD-VDDVRYNMRKAL 486
            M++Q+I+ GG +   G   G  +VA TEQAG R+  RGALS E+  K    FMED+ V+++  +DD+   M  AL
Sbjct:   42 MIDQNILVGGAIGLVGTLGGVALVAFTEQAGERTNARGALSSEQAAKFAGKFMEDEEVDQSGTIDDIVAKMEAAL 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig726.18399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LC02_ECTSI1.970e-5499.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFV7_9STRA5.390e-1143.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0TE04_THAOC1.330e-840.71Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4ECZ2_9STRA2.350e-841.23Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J6C9X7_DIALT1.570e-542.67Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig726contigEcto-sp13_S_contig726:18274..22042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score189.5
Seed ortholog evalue1.2e-45
Seed eggNOG ortholog2880.D8LC02
Model size1483
Hectar predicted targeting categorychloroplast
Exons4
EggNOG OGs2E97Y@1,2SFM6@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_003940.1
Cds size474
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig726.18399.1prot_Ecto-sp13_S_contig726.18399.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig726 19184..21348 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463993.937446-UTR-Ecto-sp13_S_contig726:18273..191831681463993.937446-UTR-Ecto-sp13_S_contig726:18273..19183Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig726 18274..19183 -
1681463993.9889846-UTR-Ecto-sp13_S_contig726:21348..213591681463993.9889846-UTR-Ecto-sp13_S_contig726:21348..21359Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig726 21349..21359 -
1681463994.0023332-UTR-Ecto-sp13_S_contig726:21954..220421681463994.0023332-UTR-Ecto-sp13_S_contig726:21954..22042Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig726 21955..22042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463993.9504561-CDS-Ecto-sp13_S_contig726:19183..192581681463993.9504561-CDS-Ecto-sp13_S_contig726:19183..19258Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig726 19184..19258 -
1681463993.9617774-CDS-Ecto-sp13_S_contig726:19857..199621681463993.9617774-CDS-Ecto-sp13_S_contig726:19857..19962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig726 19858..19962 -
1681463993.974559-CDS-Ecto-sp13_S_contig726:21054..213481681463993.974559-CDS-Ecto-sp13_S_contig726:21054..21348Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig726 21055..21348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig726.18399.1

>prot_Ecto-sp13_S_contig726.18399.1 ID=prot_Ecto-sp13_S_contig726.18399.1|Name=mRNA_Ecto-sp13_S_contig726.18399.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MRSIGALLFFLPFTSAFLAPTASLPRSGRATSPFVSGVQASSQQQQRRHA
RSSLTMVEQDIIYGGLVAAAGLAVGAGMVALTEQAGVRSEERGALSYERK
MKMQAMFMEDDVVEETDVDDVRYNMRKALRANQTEEELLALTADARKRAE
EEADDGW*
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mRNA from alignment at Ecto-sp13_S_contig726:18274..22042-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig726.18399.1 ID=mRNA_Ecto-sp13_S_contig726.18399.1|Name=mRNA_Ecto-sp13_S_contig726.18399.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3769bp|location=Sequence derived from alignment at Ecto-sp13_S_contig726:18274..22042- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCCTACCACGGCGCTGATCTGTAACCATCGTCAAGCACTCGTCTCGTG
CCCCTCCCCCCGCTCCGTACACATCGACTCAGAAACAGGTGCGATAAGTC
AAGGAGGGATTGCGAAATGAGCAGAGGATGTGTAAGCTGGTTTCTTTTCT
ATAAACACTCTCCGTTGGGTTGGTCTAACCTGCGACGCGACGTACGTCAG
ACCTCAAACGTCATGTTCATGTGCGCGTCCACCTCTCCGCGTTCATTTGT
TCTGTGTGTGTATACCGGAAGAGAGCAACCGCGTATTGTAAGGAAGAAAC
CCTCGCTTCACAGTAATGGAGCCTTGTCTCTCACGTACGTGAACCCTTCT
TTGGCGATGCCGTGCCGCCGTGATTAGCTGTGACCGCTGTGCTGCCTTCT
GTCGGAACCAGCCCCACAGGACTGTTAGTTTTTCAGTCTCGTTCTACAAT
GTATTGCTGACTTCCTCTTCCAACACAAACAAAGCCACGTTGTAGAATGT
CCACGGCGAAAGCGCTGACTAGCTTCGTAGCATCATCCAGTTTCCATCAG
CGCACCTCCTTTCAAAATTGCCCCGTACCGTCTTTACCTCCCGCCTACCA
ACTCCAAAATCGTCGTGTCACTACTGCTGTACTACGAGTCACTAATCCCC
CCGCGTTCTGCGTCAACCTCTCCTTTCGAGCAGACACCAACACCATGCGA
TCCATCGGGGCACTGCTGTTCTTCCTCCCCTTCACCTCGGCCTTCCTGGC
GCCGACGGCTTCCCTGCCTCGTAGCGGCCGTGCCACCTCCCCCTTCGTAA
GCGGAGTTCAGGCATCGTCACAGCAGCAGCAGCGACGGCATGCGAGGTCG
TCGTTGACCATGGTCGAGCAAGACATCATTTACGGGGGCCTGGTGGCTGC
TGCGGGGCTCGCCGTGGGCGCGGGAATGGTGGCTCTCACGGAACAGGCGG
GGGTGCGCTCGGAGGAGCGCGGAGCGCTATCGTACGAGGTTAGTTTTTGT
GGTCAAGGGGTTCTTCTACGTTTCGTCGGTCCATCGTTGTTTAAGATGTA
CTACTCTTGCGTCTATCCATCTGTCAACAGCAGCGGGTCTCTCTCTTACT
ATCTACAGCAGTACTTCGAAGTAGCAACACAAGAACCCATTTCCATCCAC
GAACAAGAGCCATGGATTAATTGTCATTGGCCTTGTGTTGTTACGATTCC
CCGAGCAGAATACTAGTAGTTTTGAAAAAACAAGAAACGACGGAGAACCC
AGCGAGTCCCACATCAGACACACGAGATCAGGTGGAGGTGTTGCACAATA
CGGAAAAGTTCCGTTCGTTGCCGCACAGAGCAGGGGTTGGTTGGGGCTTG
CCTCCACCAGCGTATCGCGGAGTCTTCCTCCGCACACCTACCTCTCAGGC
AAAGAAGAAAATTGTCGTGAGTCTAGCTAGATTCCAGACGAAACAGGCGG
TGTAAAGGTTCTTCGCCTTTCGGATTCCCAACCTAGGCATCATAGAGGAC
AGCAGCGACATGCACATTAGTACGGCTAGGTCTGGTGGCTGCACGTGAGG
TCCGTTCCACGGTATGGGACCGGCCCCCCTATTCTTGACCGCCCTCCCCC
ATGAACTAATGAGACATTGGCCAACTCTGCGATGATCGAGGCTCGGTCTG
CTTGATGCGCCCAATCATAGGAGTTGGATGAGTTTGCCGTTGTGTCGGCA
TCAAATGGCTGAGCGGCAAACTCATCCACCTCCTCTGATTGTGCGCAACA
AGTAGACGGAGTCTCGATCATAAATTAGTTGTCCAAAGTCTCGGGGGGGG
CGGTCCTTTCAACGCTCCCTGACATTGGCCAAGGAGCTGGAAGCCGTCCA
ACGCTCTGGGTCGAGACTGGCCAATGCGGAGCACAAGAAAAGCCCGTGCC
TACGATGTATATCTGCTGCACCCAACTTGAAACCGTCTCATGTTTCGTTC
TCCGCCTCCTTGTGGCGACGATTCAGCCCCTGCGTTTGTGGTTGGTGTTT
CCTCCTCACATCCAAGGTAGCTAGCCATGCGTGATTGCTCATGCCGTCCC
GTTTTTTTCTGTTTTGCTGTGGTTGCTCAGAGGAAGATGAAGATGCAGGC
CATGTTTATGGAGGACGACGTTGTCGAGGAGACGGACGTGGATGACGTGC
GGTACAACATGCGCAAGGCTCTTCGCGCCAACCAGGTGACCTAAAATTGC
GACGGTAGTAGCAAATGGATCATCGCGCTGTTCCGTTAGCAGATGGATCC
TCATTCCATTTCATTTTATTCTGCGGCTCAACTCGGTGCCATTCCCATCC
AACCTTAGATTGTGGTGATTGGAAACTCACGAAGATGCTTGCTAGAAAAT
AACATCACTGTCGCTGCAAGACCGCCCGTTCGAGATATACCCCGGTCAAA
GGGATGGGTGGGTTAAGAGACCTTAACAGCAGTGACTGGGAGAGGAAACT
GCTGGATACTGCTGTGCATAATTTGAGTCTGTTCAAGCCTATCCGCTGTA
GGACCAGTGACGCTTATATTATCAACCCCAAAAACCGAGACTTCAAAGCA
ACAATGTCTGTATAGATCATTGGAACGTCAAGTGTGGTCGCCGTAGATTG
TCCCACCCTCACCCTTGGAAAACTTCCTGCTGAGAGAGTCGCGCCTGACG
TCGTAATAATACAGCGCGCGCCCTTTCCGAGCGGGAAAACGGGATCACGC
ACGTTCACTTCTTTGTGCTGCTTTTCTTCTCCCTCTCTCACGCAACGCTT
GGCGCCCCCAACCTTTCTGTTCTCCTCTCTTCAGACGGAAGAAGAGTTGT
TGGCGTTGACGGCGGACGCGAGGAAAAGGGCAGAGGAAGAGGCAGACGAT
GGTTGGTAAACCAATAATATAGCAAGACGGAGGGAAAAGGCGGCGGAACT
AAGTTACTTTTTAAGGATTGTGGGACGGCCGGGGAGGAACCGACGGCGAG
AGGAATTGTGACGACGAGGAGCGCTGGGGATGTTCGGGGCTCACGCGCGT
AGGAATAAGCCAGGGAGTTCGGACGGGTTGGTTGCTTCAGGATGGCCGGG
ACTTTGTGCGGGTTATGCCTGTCAGGAGGTTATCCAGATGCATGTTCGTC
CGAGCGGCTTTCGACACAGCGGTGGGAAGTATAGAGGGTTTGTATTTTGG
TGGTTTGTCTATCCATTCTATCCTCGACGTTGCCACATATATGTTTTCGA
TCGTTAGTGTTCACGCGCTCAGCATTCCATACCTTACTGGCACGAAGGTC
GTATTTAGGGTGGGATATGACGGGGGACTTCGGCATAGATGCGCGTAAGT
GTGTGTCACACGCGCCTAGCTAGAGAGCGTAGAGTAGAAGGCCCTTGGTA
GGAGCCCAACGGCCACATGACGAAGTTTTGGTTTGTTGTGCGGTGTGGTG
GGTGACGGAAGGTTCGTTCGTTTCTTCCGTCTTCTGGCCATGGTTTTGTC
ATGGCAGGACCAACATCAAACAATTGATTCATACAGAAATACACCTTCGG
AACGGCCTGCTAAGCCGTTGGGCTATGCCCGCGAGAGTTCGAATCTCTTC
GTCGACGCCGATAAGGACACGGGCTTCCCTTGTTGTGTGGAGGCCCAGGT
CGCAGTGACCTTTATCCAGAACTAAGGGCTGGCAGGACTCTTCGTTGAGA
TTCAGAGAGGAGAGGGTCTCAAAAGAGAGAGACAAGCGAGAGTGTGCCGC
CAAAGGGTCGAGGGAGACCAAGCCTGAGGGTCTCGGATTCCCAAGCTCCA
CAGGTGGCGCTAAGAGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig726:18274..22042-

>mRNA_Ecto-sp13_S_contig726.18399.1 ID=mRNA_Ecto-sp13_S_contig726.18399.1|Name=mRNA_Ecto-sp13_S_contig726.18399.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig726:18274..22042- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGATCCATCGGGGCACTGCTGTTCTTCCTCCCCTTCACCTCGGCCTT
CCTGGCGCCGACGGCTTCCCTGCCTCGTAGCGGCCGTGCCACCTCCCCCT
TCGTAAGCGGAGTTCAGGCATCGTCACAGCAGCAGCAGCGACGGCATGCG
AGGTCGTCGTTGACCATGGTCGAGCAAGACATCATTTACGGGGGCCTGGT
GGCTGCTGCGGGGCTCGCCGTGGGCGCGGGAATGGTGGCTCTCACGGAAC
AGGCGGGGGTGCGCTCGGAGGAGCGCGGAGCGCTATCGTACGAGAGGAAG
ATGAAGATGCAGGCCATGTTTATGGAGGACGACGTTGTCGAGGAGACGGA
CGTGGATGACGTGCGGTACAACATGCGCAAGGCTCTTCGCGCCAACCAGA
CGGAAGAAGAGTTGTTGGCGTTGACGGCGGACGCGAGGAAAAGGGCAGAG
GAAGAGGCAGACGATGGTTGGTAA
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