mRNA_Ecto-sp13_S_contig726.18397.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig726.18397.1
Unique NamemRNA_Ecto-sp13_S_contig726.18397.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig726.18397.1 vs. uniprot
Match: D8LC00_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC00_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 2.880e-62
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1 
Query:    1 AVNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDQVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 294
            AVNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELD+VDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV
Sbjct:    7 AVNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDEVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 104
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BLAST of mRNA_Ecto-sp13_S_contig726.18397.1 vs. uniprot
Match: A0A7S1B3V4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3V4_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.500e-33
Identity = 57/98 (58.16%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    4 VNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGA-KYELIELDQVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 294
            + + +G + VVV+SKTYCPFCTKAK++L +VG   ++ +ELDQ+ +GS+IQ  L S+TGQR+VPNVFIGG SIGGGDDT  L++SG+L T + A GA+
Sbjct:   13 IQDTIGSNKVVVFSKTYCPFCTKAKRSLANVGCTNFKSVELDQMADGSSIQSGLLSLTGQRTVPNVFIGGKSIGGGDDTAALEQSGKLKTMLQAAGAL 110
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BLAST of mRNA_Ecto-sp13_S_contig726.18397.1 vs. uniprot
Match: A0A836CIL9_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL9_9STRA)

HSP 1 Score: 113 bits (283), Expect = 9.400e-31
Identity = 53/97 (54.64%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    4 VNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDQVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 294
            +   V    VV+YSK+YCP+C KAK+AL+ + A +E IELDQV NG+ IQ AL+ +TG  +VP VF+GG  IGGGDDT R Q++GEL+  VTA G +
Sbjct:    5 IKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 101
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BLAST of mRNA_Ecto-sp13_S_contig726.18397.1 vs. uniprot
Match: K3WRV6_GLOUD (Glutaredoxin domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRV6_GLOUD)

HSP 1 Score: 110 bits (276), Expect = 1.190e-29
Identity = 50/97 (51.55%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:    4 VNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDQVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 294
            V   +    V+VYSK+YCP+CTK K  LK++GA +E+IELDQ+++G A Q AL++ITGQR+VPN FIGG ++GG  D  +L K+ +L+ K+ AV A+
Sbjct:    8 VEAKIAATPVIVYSKSYCPYCTKTKALLKELGASFEVIELDQINDGDAQQSALEAITGQRTVPNTFIGGKTVGGNSDIQKLHKNNQLVDKLKAVSAL 104
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BLAST of mRNA_Ecto-sp13_S_contig726.18397.1 vs. uniprot
Match: A0A329S920_9STRA (GST N-terminal domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329S920_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.690e-29
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    4 VNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDQVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 294
            V   +    VVVYSK+YCP+CTK K  L ++GAKYE++ELDQ+D GS  QDAL+ +TGQ +VPNVF+GG SIGG  D  +L K+G L   +   GA+
Sbjct:    8 VQAQIAASPVVVYSKSYCPYCTKTKTLLTELGAKYEVVELDQIDGGSEQQDALEDLTGQSTVPNVFVGGKSIGGNSDVRKLHKAGNLGPLLKESGAL 104
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BLAST of mRNA_Ecto-sp13_S_contig726.18397.1 vs. uniprot
Match: A0A3M6UI22_POCDA (Glutaredoxin domain-containing protein (Fragment) n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UI22_POCDA)

HSP 1 Score: 111 bits (277), Expect = 2.180e-29
Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:    4 VNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAK-YELIELDQVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 294
            +   V  + VVVYSKTYCPFC KAK ALK  G K Y L+ELD+ D+G   QDALQ ITG RSVP VFIGGT +GGGDD   LQ  G+L  K+   GA+
Sbjct:   40 IKAQVKDNKVVVYSKTYCPFCKKAKDALKAAGLKDYLLVELDERDDGDEFQDALQKITGGRSVPRVFIGGTFVGGGDDVQGLQNKGQLKPKLENAGAL 137
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BLAST of mRNA_Ecto-sp13_S_contig726.18397.1 vs. uniprot
Match: A0A7S0Q1V6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q1V6_9EUKA)

HSP 1 Score: 110 bits (275), Expect = 2.400e-29
Identity = 52/97 (53.61%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    4 VNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDQVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 294
            V ++V +H V+V+SK+YCP+C  AK+ L   GAK+  IELD+ D+G+AIQ+AL  +TGQ++VPNVF+GG SIGGG +T  L +SGEL  K+ A  A+
Sbjct:   20 VEKLVEEHAVMVFSKSYCPYCKLAKEVLTKEGAKFHAIELDKRDDGNAIQNALLKLTGQKTVPNVFVGGKSIGGGSETKALSQSGELKKKLVAAKAL 116
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BLAST of mRNA_Ecto-sp13_S_contig726.18397.1 vs. uniprot
Match: A0A8K1FSE2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FSE2_PYTOL)

HSP 1 Score: 110 bits (274), Expect = 4.160e-29
Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:    4 VNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDQVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 294
            V E V Q+GVVVYSK+YCP+CT  K  L+++G  + L+ELD+V +G  +Q A+Q ITGQR+VPN FI G S+GG  D   L K+G+L+  +  VGA+
Sbjct:   26 VQETVAQNGVVVYSKSYCPYCTSTKSLLRELGVNFALVELDRVSDGDDLQSAIQQITGQRTVPNTFINGKSVGGNSDIQALHKAGKLVPLLQQVGAL 122
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BLAST of mRNA_Ecto-sp13_S_contig726.18397.1 vs. uniprot
Match: H3G9V5_PHYRM (Glutaredoxin domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=H3G9V5_PHYRM)

HSP 1 Score: 108 bits (271), Expect = 6.870e-29
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:    4 VNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDQVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 294
            V   +    VVVYSK+YCP+CTK K  L ++GAK+E++ELDQ++ GS  QDAL+ +TGQ +VPNVF+GG SIGG  D  +L KSG+L   +   GA+
Sbjct:    8 VEAQIAASPVVVYSKSYCPYCTKTKTLLTELGAKFEVVELDQINGGSEQQDALEDLTGQSTVPNVFVGGQSIGGNSDVRKLHKSGDLEPLLKHSGAL 104
[Close]
BLAST of mRNA_Ecto-sp13_S_contig726.18397.1 vs. uniprot
Match: K3WRU6_GLOUD (Glutaredoxin domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRU6_GLOUD)

HSP 1 Score: 108 bits (271), Expect = 7.070e-29
Identity = 53/97 (54.64%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:    4 VNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDQVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 294
            V   V  + VV++SK+YC +CTKAK  L+++G ++ELIELDQVD+G AIQDAL  ITGQR+VPNVFIGG S+GG  D   L K+ +L+  +   GA+
Sbjct:    8 VETKVAANPVVMFSKSYCQYCTKAKALLRELGVQFELIELDQVDDGDAIQDALTEITGQRTVPNVFIGGKSVGGNSDIQALYKNDQLVPLLKQHGAL 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig726.18397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC00_ECTSI2.880e-6298.98Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S1B3V4_9STRA4.500e-3358.16Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A836CIL9_9STRA9.400e-3154.64Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
K3WRV6_GLOUD1.190e-2951.55Glutaredoxin domain-containing protein n=1 Tax=Glo... [more]
A0A329S920_9STRA1.690e-2953.61GST N-terminal domain-containing protein n=3 Tax=P... [more]
A0A3M6UI22_POCDA2.180e-2959.18Glutaredoxin domain-containing protein (Fragment) ... [more]
A0A7S0Q1V6_9EUKA2.400e-2953.61Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A8K1FSE2_PYTOL4.160e-2951.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3G9V5_PHYRM6.870e-2952.58Glutaredoxin domain-containing protein n=20 Tax=Ph... [more]
K3WRU6_GLOUD7.070e-2954.64Glutaredoxin domain-containing protein n=1 Tax=Glo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig726contigEcto-sp13_S_contig726:8708..10359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score110.9
Seed ortholog evalue3.2e-22
Seed eggNOG ortholog65071.PYU1_T007700
Preferred nameGRX1
Model size297
KEGG koko:K03676
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004364,GO:0004601,GO:0004602,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006801,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0010731,GO:0015035,GO:0015036,GO:0015037,GO:0015038,GO:0016209,GO:0016491,GO:0016667,GO:0016684,GO:0016740,GO:0016765,GO:0019430,GO:0019538,GO:0019725,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0036211,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071450,GO:0071451,GO:0071704,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901564,GO:1901700,GO:1901701,GO:1990748
Exons3
EggNOG free text desc.Glutaredoxin. Source PGD
EggNOG OGs1MHP3@121069,COG0695@1,KOG1752@2759
Ec32 ortholog descriptionGlutaredoxin
Ec32 orthologEc-20_003920.1
Cds size285
COG Functional cat.O
BiGG ReactioniMM904.YDR513W
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463993.7026944-CDS-Ecto-sp13_S_contig726:8707..87911681463993.7026944-CDS-Ecto-sp13_S_contig726:8707..8791Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig726 8708..8791 -
1681463993.7160888-CDS-Ecto-sp13_S_contig726:9749..98511681463993.7160888-CDS-Ecto-sp13_S_contig726:9749..9851Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig726 9750..9851 -
1681463993.7256246-CDS-Ecto-sp13_S_contig726:10248..103471681463993.7256246-CDS-Ecto-sp13_S_contig726:10248..10347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig726 10249..10347 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463993.734034-UTR-Ecto-sp13_S_contig726:10347..103591681463993.734034-UTR-Ecto-sp13_S_contig726:10347..10359Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig726 10348..10359 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig726.18397.1prot_Ecto-sp13_S_contig726.18397.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig726 8708..10347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig726.18397.1

>prot_Ecto-sp13_S_contig726.18397.1 ID=prot_Ecto-sp13_S_contig726.18397.1|Name=mRNA_Ecto-sp13_S_contig726.18397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
MVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDQVDNGSAIQDAL
QSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV*
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mRNA from alignment at Ecto-sp13_S_contig726:8708..10359-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig726.18397.1 ID=mRNA_Ecto-sp13_S_contig726.18397.1|Name=mRNA_Ecto-sp13_S_contig726.18397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1652bp|location=Sequence derived from alignment at Ecto-sp13_S_contig726:8708..10359- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGTAAATGAAATGGTGGGCCAGCACGGCGTGGTGGTGTACTCGAAGAC
GTACTGCCCTTTCTGCACCAAGGCCAAGAAGGCGTTGAAGGACGTCGGGG
CCAAGTACGAGGTACGTTCTCCCGTGAAAACGAGAAAAAGTGCCTGTGGA
TGCATCACCATTGGTACTGCTGTAGTACTCGTTGAATGTTGTTGCTGGGA
AAGGAGTACCGCCGATGCTCAAGGCGGCCAACTACAAAAGCTCTACTTGC
GAGAGCAAGGTTGCACACACACGTTGACACGCTCAGCTATGTATGAGCCC
GTGCCACATCTAGTTTCCCAAACACTGTCAACAATTTATCGTACCGTGAC
ACTTTTCTCTCGGACCGAACACTGCTGTCGTGGCGGCTAGCTGTCAACAA
GTACGACGAGTAGCTCAGGCAGGAATGCAGCAGTCGAGGCGTTCATTCGC
CCTGCTCACACCTCTCTCCCATGTCTGCAACTCGCGCGCCGTTTTATCGT
TCGAGCAGCTTATCGAGCTAGACCAGGTGGACAACGGCAGCGCCATCCAG
GATGCTCTTCAGTCTATCACTGGCCAGCGCTCTGTGCCGAACGTCTTCAT
CGGCGGAACGGTAGGATACGGGCGAAAAGGGTTACGGAGGGAGGGGGTGG
TTCGTGGGAGAGAACTTGGGTTATTTTTTATTTTTTCGGCATGCGTGAAA
AGAGGGAACAGTCCTCGACAGACGTTGGGGCATTGTAGCCTTATGAAGGT
GATCTCCACCTTTTCTTTTTTTTTTGCGGTCGAGGACGATTGTGTTGGTT
TTTTTGCGAAGAAAAATGTCCCGTCGGCAGAAGGCCGAGTGGGCAAAACA
GAGCGGCGATGATCTGAGAATCGCGTGGTCGCCATGGCCCACACCTTCAA
GAATAGTTGATCCTTCCTAAAGCACCATCGCAAATAAAACACGTGTTGCC
TCCACGAGCTAGTGACATGTGCCTCCTTTGATAGTTTAACATCTACCACG
CTAGCCTGTTGAATCAGGTCTGCCTCAAAGCGGGATGAAAACGGAAAGAA
CCCTGATGTGTGTAGACTATGTGTGTTTCCTTTACAAGCATTGACCGTAC
CAACCGGCTTGAAAAAAAATGATGTTTCATCGACCTTACAGCTGAAAAAA
ACATTAACATGCTCGCCCTGCAGATGTTTGTTGTCCCTCAATTAATTTTG
GTCGCCATGTCATGCATTTTGGCACATTTTGGCGCGTCAACCAGAGTGTG
TTTTCTCCGCCTTCCTTTTGCATCGCTCTCTTGAACTTGAAGAGTAGGGA
CAAAGGTTGGCCATCACATAACGCTACGACCTCCGCGCTACATTCCATCC
CAGACTCTTTGCTGTGGAAGAGATGAATTCGTTGTTTTTGTAGGGGAAAG
ACAACATCATAGACTCAGAACTAGCAAGAGCGTCCAGCGATAGCTGCCCC
ATATCGCTCGCGAATCATTCCTTGCCCCTCCCCACTCAAATCTTGTTGCT
CTGCTTATTTGTTGAATCTCCTCCCCTCCCTTGTTTGCTCCTTGTGCGTT
TGCTCTTGTCGGCGGCAGTCGATCGGAGGGGGAGACGACACGGTCCGGCT
GCAGAAGTCCGGGGAGTTGTTGACCAAGGTCACGGCCGTTGGCGCTGTTT
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig726:8708..10359-

>mRNA_Ecto-sp13_S_contig726.18397.1 ID=mRNA_Ecto-sp13_S_contig726.18397.1|Name=mRNA_Ecto-sp13_S_contig726.18397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig726:8708..10359- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGGCCAGCACGGCGTGGTGGTGTACTCGAAGACGTACTGCCCTTT
CTGCACCAAGGCCAAGAAGGCGTTGAAGGACGTCGGGGCCAAGTACGAGC
TTATCGAGCTAGACCAGGTGGACAACGGCAGCGCCATCCAGGATGCTCTT
CAGTCTATCACTGGCCAGCGCTCTGTGCCGAACGTCTTCATCGGCGGAAC
GTCGATCGGAGGGGGAGACGACACGGTCCGGCTGCAGAAGTCCGGGGAGT
TGTTGACCAAGGTCACGGCCGTTGGCGCTGTTTGA
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