mRNA_Ecto-sp13_S_contig7253.18388.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7253.18388.1
Unique NamemRNA_Ecto-sp13_S_contig7253.18388.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7253.18388.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 3.610e-115
Identity = 180/188 (95.74%), Postives = 181/188 (96.28%), Query Frame = 1 
Query:    1 IVNDDYAFYDTGALAAAAATSSNNNWAGASHWKFVGVKKKRPVRNKRGQGGGGMGPDGEPMVDEDGNELDAGGAAGGRKARGKRRPPAIDFDAPPVAESALAPPPKPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTKDLGELFLRAGAFTKRWAAGEAGEASEGARVDLQGFHDT 564
            IVNDDYAFYDTGALAAAAATSSNN WAGASHWKFVGVKKKRP RNKRGQGGGGMGPDGEPMVDEDGNELD+G A GGRKARGKRRPPAIDFDA PVAESALAPP KPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTKDLGELFLR GAFTKRWAAGEAGEASEGARVDLQGFHDT
Sbjct:  411 IVNDDYAFYDTGALAAAAATSSNNTWAGASHWKFVGVKKKRPARNKRGQGGGGMGPDGEPMVDEDGNELDSGDAVGGRKARGKRRPPAIDFDAAPVAESALAPPAKPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTKDLGELFLRTGAFTKRWAAGEAGEASEGARVDLQGFHDT 598
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BLAST of mRNA_Ecto-sp13_S_contig7253.18388.1 vs. uniprot
Match: A0A6H5K552_9PHAE (Condensin complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K552_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 9.240e-84
Identity = 131/135 (97.04%), Postives = 133/135 (98.52%), Query Frame = 1 
Query:  160 MGPDGEPMVDEDGNELDAGGAAGGRKARGKRRPPAIDFDAPPVAESALAPPPKPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTKDLGELFLRAGAFTKRWAAGEAGEASEGARVDLQGFHDT 564
            MGPDGEP+VDEDGNELDAGGA GGRKARGKRRPPAIDFDAPPVAESALAPPPKPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTKDLGELFLR GAFTKRWAAGEAGEAS+GARVDLQGFHDT
Sbjct:    1 MGPDGEPIVDEDGNELDAGGAVGGRKARGKRRPPAIDFDAPPVAESALAPPPKPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTKDLGELFLRTGAFTKRWAAGEAGEASDGARVDLQGFHDT 135
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7253.18388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD70_ECTSI3.610e-11595.74Condensin complex subunit 2 n=1 Tax=Ectocarpus sil... [more]
A0A6H5K552_9PHAE9.240e-8497.04Condensin complex subunit 2 n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7253contigEcto-sp13_S_contig7253:518..4088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score360.1
Seed ortholog evalue6.1e-97
Seed eggNOG ortholog2880.D8LD70
Preferred nameBRN1
Model size567
KEGG koko:K06676
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0001671,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005737,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007080,GO:0008047,GO:0008150,GO:0008608,GO:0009987,GO:0010911,GO:0010912,GO:0016043,GO:0019899,GO:0022402,GO:0030234,GO:0030261,GO:0031974,GO:0031981,GO:0032781,GO:0032991,GO:0033553,GO:0034506,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044547,GO:0044815,GO:0048285,GO:0050000,GO:0050790,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060589,GO:0060590,GO:0061638,GO:0065007,GO:0065009,GO:0070013,GO:0070058,GO:0071103,GO:0071840,GO:0072586,GO:0072587,GO:0098687,GO:0098772,GO:0098813,GO:0140014,GO:1903047,GO:2000371,GO:2000373
Exons5
EggNOG free text desc.DNA topoisomerase (ATP-hydrolyzing) activator activity
EggNOG OGsCOG5229@1,KOG2328@2759
Ec32 ortholog descriptionCondensin complex subunit 2/barren
Ec32 orthologEc-05_001580.1
Cds size567
COG Functional cat.BD
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463993.0452044-CDS-Ecto-sp13_S_contig7253:517..6401681463993.0452044-CDS-Ecto-sp13_S_contig7253:517..640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7253 518..640 -
1681463993.0586278-CDS-Ecto-sp13_S_contig7253:1095..11591681463993.0586278-CDS-Ecto-sp13_S_contig7253:1095..1159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7253 1096..1159 -
1681463993.0700228-CDS-Ecto-sp13_S_contig7253:2118..22161681463993.0700228-CDS-Ecto-sp13_S_contig7253:2118..2216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7253 2119..2216 -
1681463993.0807269-CDS-Ecto-sp13_S_contig7253:3171..33331681463993.0807269-CDS-Ecto-sp13_S_contig7253:3171..3333Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7253 3172..3333 -
1681463993.0917-CDS-Ecto-sp13_S_contig7253:3968..40881681463993.0917-CDS-Ecto-sp13_S_contig7253:3968..4088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7253 3969..4088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7253.18388.1prot_Ecto-sp13_S_contig7253.18388.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7253 518..4088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7253.18388.1

>prot_Ecto-sp13_S_contig7253.18388.1 ID=prot_Ecto-sp13_S_contig7253.18388.1|Name=mRNA_Ecto-sp13_S_contig7253.18388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
IVNDDYAFYDTGALAAAAATSSNNNWAGASHWKFVGVKKKRPVRNKRGQG
GGGMGPDGEPMVDEDGNELDAGGAAGGRKARGKRRPPAIDFDAPPVAESA
LAPPPKPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTK
DLGELFLRAGAFTKRWAAGEAGEASEGARVDLQGFHDT*
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mRNA from alignment at Ecto-sp13_S_contig7253:518..4088-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7253.18388.1 ID=mRNA_Ecto-sp13_S_contig7253.18388.1|Name=mRNA_Ecto-sp13_S_contig7253.18388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3571bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7253:518..4088- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTGTGAACGACGACTATGCATTCTACGACACCGGGGCCCTTGCGGCGGC
AGCGGCCACGTCCAGCAACAACAACTGGGCCGGCGCCTCGCATTGGAAGT
TCGTTGGCGTCAAGAAGAAGGTGGGGCGAATTTGGGATTTTCTTGTTTTT
TTCCGTTCGCCTTCGCGGGAAATTATGTTTGTGAGGAAATAGAACAGGGA
GAGGGTACAACGTATGCGTATTTCTCTAATCCTACCCCTGGCTCAACCTC
CCCGATTGTGTGCTTCATCCAACATGTTCACTTATTAGAAACAAGAAACG
CGGAGGCTAATGTGTTGGTGACAACCTTGTCATGCGCCACGTGTTGCGGC
TTCTTGGGACCAAATAAATCGTTGTTTCTAAGCCGAAAGGAAGGCTACAA
ACACACCTCGCTTTTCCTGGCGGGTGGAAGCTTGTTAACGTGTCACACAC
TGGTCCGACTTTGAGGTTTGGTTCGCGGTTAATGTTTAGCGAAGGCACAC
CGCTGACGACCGAGCGAGAATTGAATTGGCGTGACCTCCCACAACCGCTC
AACAGCAGTGCAAGGTTTTATTTTTTGGAGCTGCGGCCGATGTGCGATGG
TGGGGGGCGAGAGGCGCGTAGAGGGTCATGCAGGTCATGTCACGTGTTCG
GTATCTCACTACACAGAAGGCAGTAGGCCCTTCTCCTACTCCTTGAATCG
GCTCTCTCTCTCGCGTTGACTCTTCATAAAAAATGTCGTGGCCCACCTGT
CGCAGCGGCCGGTGCGCAACAAGCGCGGGCAGGGAGGTGGCGGGATGGGA
CCCGATGGGGAGCCGATGGTCGATGAGGATGGTAATGAGCTGGACGCCGG
GGGTGCCGCGGGAGGGCGCAAGGCCAGGGGAAAGCGGCGGCCTCCGGCGA
TCGACTTCGACGCCCCGGTGAGAGGCACGCACGGGAGTTTTTGGACAGAT
AGGGCAGTGTTGTATGCGTGTGGCTCTGAATGCTTCTGAGCGCCGGCGTG
TTTTCACAATTGTTAGAACTCCGATGCGTAAAGTACGTTTTTTTTTTTAA
TACAAGTCGTGTTTGACCCTAAAAATATGCATACGTATACAATGGTCGAT
ATTCAAGCACGACTACTGTGAGAGTGATATATTTCGATCCGAACGGTAGG
ACGACTTTGGGAACAGGCGATTTCCTTTCTGAACAAGTCCATATCTTAAG
GATTAGGACCCTTTCGTCTACCGCGACGTGTTGCTTGCAACGTCGATGGC
GCCTCAGTTTCACGTCGTTGGGTACTCTTCGGTCGTCGATCACCTGGCCC
GTTCTCTCCACAACGAGACGTTCAAATTTCGGTGAAGTTGCTGCTGTCGA
TCGCGTTCACGAGTTCCAGGTGCACTCAGGCACTCCCGAACAGCGAACAC
CAAGACGTGTAAACAGCTTTTTGGATTATGATCCATGTCCACGTTCTTGT
AGTCAGACTACCTCATACCGGGTGTGCCGTGGGATGCGGCCTCGGCAGTA
GTTACCGTACAAGGGCGGGCAATCGCACAGTCCGATCGGACAACCCGTCC
CTTTTTTTTTAACACAATTTTCCCCTGTCCTTTCTCCCTTGTCTCTGCCC
CCCCCCACCTTTTACCCTTGTGTGCCGAACCACACAGCCTGTCGCAGAAA
ACGCCACGCCTTTTTTTCAACCACTAAATTTACCGCCATACTTTCTCCTT
TGTCTTACCCCCCGCCTTCCCATACTCTCGTGTGCCGAACCAAAAAGCCT
GTCGCAGAGAACGCCCCCACCAATTTTGACATATTTACCGCTACTGCTGC
ACCCCCACATGCATACTTTCTCCCGTGTCTTGCCCCCCACCTTCCCATAC
TCTCGTGTGCCGAATCACAAAGCCTGTCGCAGAGAGCGCCCTGGCACCAC
CGCCTAAACCCAAGTCCCGGGGGCGGCGATCGCAAGAGCCGACCCTCCTC
TCCGAGGACTACGTCAAGAGGTGCATCAAACAGCGTCTACCTTGCGTTGA
ACAGCATTACAGCAGTATAGCAGTAGAGGTCCCTCCCTGTTCAGTGCCGG
TAAGTGCCCAGAAAACTCATCGGGACTACACCGGACCGCACCATTCAACG
TGTTGAGAATGACTTGTAAATTCAGTGTGTGTCCGCCGAAAACACCGGCC
TATCCGGGCATGGCACTATTCAACCGGTACTAAGCAGGGACCTCTACTGT
ACTTGGGGCAGCGTTGTGCGGCCTGTTTGTGGTGTTATCGGCGGCGTTTT
TGGAATGTTTTTTTTTTTTTCCGCGGAAGTGAACCGAATAGACTGTGCAA
ATGTGGCTTTGCTGTACTCATTTTCATTTGCCCTCGTACTAGAACGACGG
GTGCCTGAAAGACAAAAAGCCCACACACGATGTAGTGACTATCGCAACCC
GTTTTGTGTGCGTCTTTTTTTTATCGCATCGACCGCGCTACTGCTGTAAC
GGGCCTGCCAACGAAGATTCGTCCGTTTCAGTTCGCCAAATTGCCGCCAG
AGCTGCTCAGGCCATTATCTTAGGTCCCCTTAGTGTGCGTTTGTGTTTCG
TAAGGCCGCTGGAGTTGCCGTTGTCAAATGAAGGGCGTGTTTGCTGTCCT
TGTCTCTGCTTCTGCTTCTGCTGCTGCTGCTGCTGTTATTTTTCGGTTGC
TGTTATTGATGCTGCTGCCGCCTCTGCTGTTAGTTTTTTTCTCTTGCTTC
TGCTTATCTTGCGGTCGTGATTGTTCGCCGTTGTTGACGACGGCGGGATC
ATCCGTCATTGCTATTGCCGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTG
TTACTGGTGCTAGCGCCGTCGCTATTTTTTTTGTTTTTTTTATGTGTTTT
GCTGCTGCTACAGTAATCTTGCGGTCGTTGCTGTTAACGATGGCGCTGCT
GTTCTTTGTCCTTGCTTTAAACCCTGCAGGGCATTTAAGGCGGCGGAGGA
TGGCTCGTCGAACTACGCCCTGCCGGAGAACGCCAGGTTCAAGGTGTGTC
GACGTCCTTGTCGATGTCGATGTCGATGTCGATGTCGATGTCAATCCCTC
TACGCGCCTGGCGGGCTTAGCGGTCTCTTGTTGCCTTTGTCGTTGCTGCT
GCATCTCTTGGAGGACAGTGCTAGCGGTGGTGTTAGTTCGGAAAATGTGC
AGTTTTATTTTATTTGGGCATGTCGATGAAATTGCTTTGGTGACCTCACT
GCTTGGTCAAGCGGTTGCTGTTTTGCTGCTGCTACTGCTGTTGAATCTGT
CTCTCTTTCTCTCTTTCTCTCTGTCTCTCCGTTTCTCTTCTCTCTCTCTC
CCCCCCCCCACCCTCTCTGTTTTCCCCCCTCCCCCTGCCCCATCCATCTC
TCCGAGTGAAACCCATGTCTCGATTCTTCGATACCGTCCGATTTCTTCGT
TCTCTGCCTGCTTCGCGTGCCGCCCCCACGACCTCCTTTCGCCGACAGAC
CAAGGACCTGGGAGAGCTCTTCCTGCGGGCGGGAGCTTTCACTAAGCGTT
GGGCCGCCGGGGAGGCGGGAGAGGCGTCGGAAGGGGCAAGGGTCGACCTT
CAAGGGTTTCACGATACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7253:518..4088-

>mRNA_Ecto-sp13_S_contig7253.18388.1 ID=mRNA_Ecto-sp13_S_contig7253.18388.1|Name=mRNA_Ecto-sp13_S_contig7253.18388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7253:518..4088- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTGTGAACGACGACTATGCATTCTACGACACCGGGGCCCTTGCGGCGGC
AGCGGCCACGTCCAGCAACAACAACTGGGCCGGCGCCTCGCATTGGAAGT
TCGTTGGCGTCAAGAAGAAGCGGCCGGTGCGCAACAAGCGCGGGCAGGGA
GGTGGCGGGATGGGACCCGATGGGGAGCCGATGGTCGATGAGGATGGTAA
TGAGCTGGACGCCGGGGGTGCCGCGGGAGGGCGCAAGGCCAGGGGAAAGC
GGCGGCCTCCGGCGATCGACTTCGACGCCCCGCCTGTCGCAGAGAGCGCC
CTGGCACCACCGCCTAAACCCAAGTCCCGGGGGCGGCGATCGCAAGAGCC
GACCCTCCTCTCCGAGGACTACGTCAAGAGGGCATTTAAGGCGGCGGAGG
ATGGCTCGTCGAACTACGCCCTGCCGGAGAACGCCAGGTTCAAGACCAAG
GACCTGGGAGAGCTCTTCCTGCGGGCGGGAGCTTTCACTAAGCGTTGGGC
CGCCGGGGAGGCGGGAGAGGCGTCGGAAGGGGCAAGGGTCGACCTTCAAG
GGTTTCACGATACGTGA
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