prot_Ecto-sp13_S_contig7253.18388.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7253.18388.1
Unique Nameprot_Ecto-sp13_S_contig7253.18388.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length189
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7253.18388.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 3.610e-115
Identity = 180/188 (95.74%), Postives = 181/188 (96.28%), Query Frame = 0 
Query:    1 IVNDDYAFYDTGALAAAAATSSNNNWAGASHWKFVGVKKKRPVRNKRGQGGGGMGPDGEPMVDEDGNELDAGGAAGGRKARGKRRPPAIDFDAPPVAESALAPPPKPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTKDLGELFLRAGAFTKRWAAGEAGEASEGARVDLQGFHDT 188
            IVNDDYAFYDTGALAAAAATSSNN WAGASHWKFVGVKKKRP RNKRGQGGGGMGPDGEPMVDEDGNELD+G A GGRKARGKRRPPAIDFDA PVAESALAPP KPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTKDLGELFLR GAFTKRWAAGEAGEASEGARVDLQGFHDT
Sbjct:  411 IVNDDYAFYDTGALAAAAATSSNNTWAGASHWKFVGVKKKRPARNKRGQGGGGMGPDGEPMVDEDGNELDSGDAVGGRKARGKRRPPAIDFDAAPVAESALAPPAKPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTKDLGELFLRTGAFTKRWAAGEAGEASEGARVDLQGFHDT 598
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BLAST of mRNA_Ecto-sp13_S_contig7253.18388.1 vs. uniprot
Match: A0A6H5K552_9PHAE (Condensin complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K552_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 9.240e-84
Identity = 131/135 (97.04%), Postives = 133/135 (98.52%), Query Frame = 0 
Query:   54 MGPDGEPMVDEDGNELDAGGAAGGRKARGKRRPPAIDFDAPPVAESALAPPPKPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTKDLGELFLRAGAFTKRWAAGEAGEASEGARVDLQGFHDT 188
            MGPDGEP+VDEDGNELDAGGA GGRKARGKRRPPAIDFDAPPVAESALAPPPKPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTKDLGELFLR GAFTKRWAAGEAGEAS+GARVDLQGFHDT
Sbjct:    1 MGPDGEPIVDEDGNELDAGGAVGGRKARGKRRPPAIDFDAPPVAESALAPPPKPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTKDLGELFLRTGAFTKRWAAGEAGEASDGARVDLQGFHDT 135
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7253.18388.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD70_ECTSI3.610e-11595.74Condensin complex subunit 2 n=1 Tax=Ectocarpus sil... [more]
A0A6H5K552_9PHAE9.240e-8497.04Condensin complex subunit 2 n=1 Tax=Ectocarpus sp.... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022816Condensin complex subunit 2/barrenPFAMPF05786Cnd2coord: 22..166
e-value: 1.2E-7
score: 30.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7253contigEcto-sp13_S_contig7253:518..4088 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7253.18388.1mRNA_Ecto-sp13_S_contig7253.18388.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7253 518..4088 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7253.18388.1 ID=prot_Ecto-sp13_S_contig7253.18388.1|Name=mRNA_Ecto-sp13_S_contig7253.18388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
IVNDDYAFYDTGALAAAAATSSNNNWAGASHWKFVGVKKKRPVRNKRGQG
GGGMGPDGEPMVDEDGNELDAGGAAGGRKARGKRRPPAIDFDAPPVAESA
LAPPPKPKSRGRRSQEPTLLSEDYVKRAFKAAEDGSSNYALPENARFKTK
DLGELFLRAGAFTKRWAAGEAGEASEGARVDLQGFHDT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022816Condensin_barren_su2