prot_Ecto-sp13_S_contig7253.18389.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7253.18389.1
Unique Nameprot_Ecto-sp13_S_contig7253.18389.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length191
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7253.18389.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 9.360e-30
Identity = 128/190 (67.37%), Postives = 128/190 (67.37%), Query Frame = 0 
Query:    1 MTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEETDKDSGEAAARHTGRGGARGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGHDLNLGXXXXXXXXXADPFQADNGSGXXXXXXXXFLVDGXXXXXXXXXXXXXADSSESGGVGGVGMVVTPVTLEDRLCVDMK 190
            MTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEET KDSGEAAA   GRGGARGD            XXXXXXXXX               XXXXXXXXX   D NL XXXXXXXXXADPFQADN   XXXXX   FLVDG     XXXXXXXX               VTPVTLEDRLCVDMK
Sbjct:  224 MTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEETHKDSGEAAAPRAGRGGARGD--GAAVSYDTDDXXXXXXXXXFDNVPGLDDASVDGGXXXXXXXXXXXXDFNL-XXXXXXXXXADPFQADNXXXXXXXXGTSFLVDGDGEIGXXXXXXXXXXXXXXXXXXXXXXXVTPVTLEDRLCVDMK 410
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BLAST of mRNA_Ecto-sp13_S_contig7253.18389.1 vs. uniprot
Match: A0A6H5K318_9PHAE (Condensin complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K318_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.190e-27
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0 
Query:    1 MTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEETDKDSGEAAARHTGRGGARGDDG 63
            MTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEET++DSGEAAA H GRGGARGDDG
Sbjct:  248 MTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEETNRDSGEAAAPHAGRGGARGDDG 310
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7253.18389.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD70_ECTSI9.360e-3067.37Condensin complex subunit 2 n=1 Tax=Ectocarpus sil... [more]
A0A6H5K318_9PHAE1.190e-2793.65Condensin complex subunit 2 n=1 Tax=Ectocarpus sp.... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 27..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7253contigEcto-sp13_S_contig7253:4869..7627 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7253.18389.1mRNA_Ecto-sp13_S_contig7253.18389.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7253 4869..7633 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7253.18389.1 ID=prot_Ecto-sp13_S_contig7253.18389.1|Name=mRNA_Ecto-sp13_S_contig7253.18389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp
MTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEETDKDSGEAAA
RHTGRGGARGDDGGAAVSYDTDDSDGGGGGGGFDDVPGSDDASVDGGGDL
GGGGDDEGHDLNLGGGGGGDDDDADPFQADNGSGFGGGGGTSFLVDGDGE
FGAGLGSGGGADSSESGGVGGVGMVVTPVTLEDRLCVDMKA
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