mRNA_Ecto-sp13_S_contig7253.18389.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7253.18389.1
Unique NamemRNA_Ecto-sp13_S_contig7253.18389.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7253.18389.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 2.450e-31
Identity = 130/192 (67.71%), Postives = 130/192 (67.71%), Query Frame = 1 
Query:    1 GGMTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEETDKDSGEAAARHTGRGGARGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGHDLNLGXXXXXXXXXADPFQADNGSGXXXXXXXXFLVDGXXXXXXXXXXXXXADSSESGGVGGVGMVVTPVTLEDRLCVDMK 576
            GGMTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEET KDSGEAAA   GRGGARGD            XXXXXXXXX               XXXXXXXXX   D NL XXXXXXXXXADPFQADN   XXXXX   FLVDG     XXXXXXXX               VTPVTLEDRLCVDMK
Sbjct:  222 GGMTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEETHKDSGEAAAPRAGRGGARGD--GAAVSYDTDDXXXXXXXXXFDNVPGLDDASVDGGXXXXXXXXXXXXDFNL-XXXXXXXXXADPFQADNXXXXXXXXGTSFLVDGDGEIGXXXXXXXXXXXXXXXXXXXXXXXVTPVTLEDRLCVDMK 410
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BLAST of mRNA_Ecto-sp13_S_contig7253.18389.1 vs. uniprot
Match: A0A6H5K318_9PHAE (Condensin complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K318_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.710e-28
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    4 GMTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEETDKDSGEAAARHTGRGGARGDDG 195
            GMTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEET++DSGEAAA H GRGGARGDDG
Sbjct:  247 GMTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEETNRDSGEAAAPHAGRGGARGDDG 310
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7253.18389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD70_ECTSI2.450e-3167.71Condensin complex subunit 2 n=1 Tax=Ectocarpus sil... [more]
A0A6H5K318_9PHAE1.710e-2893.75Condensin complex subunit 2 n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7253contigEcto-sp13_S_contig7253:4869..7633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score127.1
Seed ortholog evalue8.8e-27
Seed eggNOG ortholog2880.D8LD70
Preferred nameBRN1
Model size580
KEGG koko:K06676
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0001671,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005737,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007080,GO:0008047,GO:0008150,GO:0008608,GO:0009987,GO:0010911,GO:0010912,GO:0016043,GO:0019899,GO:0022402,GO:0030234,GO:0030261,GO:0031974,GO:0031981,GO:0032781,GO:0032991,GO:0033553,GO:0034506,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044547,GO:0044815,GO:0048285,GO:0050000,GO:0050790,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060589,GO:0060590,GO:0061638,GO:0065007,GO:0065009,GO:0070013,GO:0070058,GO:0071103,GO:0071840,GO:0072586,GO:0072587,GO:0098687,GO:0098772,GO:0098813,GO:0140014,GO:1903047,GO:2000371,GO:2000373
Exons4
EggNOG free text desc.DNA topoisomerase (ATP-hydrolyzing) activator activity
EggNOG OGsCOG5229@1,KOG2328@2759
Cds size573
COG Functional cat.BD
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463992.966414-CDS-Ecto-sp13_S_contig7253:4868..50701681463992.966414-CDS-Ecto-sp13_S_contig7253:4868..5070Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7253 4869..5070 -
1681463992.980806-CDS-Ecto-sp13_S_contig7253:5970..61991681463992.980806-CDS-Ecto-sp13_S_contig7253:5970..6199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7253 5971..6199 -
1681463992.9906023-CDS-Ecto-sp13_S_contig7253:6624..67091681463992.9906023-CDS-Ecto-sp13_S_contig7253:6624..6709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7253 6625..6709 -
1681463992.9999354-CDS-Ecto-sp13_S_contig7253:7570..76271681463992.9999354-CDS-Ecto-sp13_S_contig7253:7570..7627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7253 7571..7627 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463993.009952-UTR-Ecto-sp13_S_contig7253:7627..76331681463993.009952-UTR-Ecto-sp13_S_contig7253:7627..7633Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7253 7628..7633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7253.18389.1prot_Ecto-sp13_S_contig7253.18389.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7253 4869..7627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7253.18389.1

>prot_Ecto-sp13_S_contig7253.18389.1 ID=prot_Ecto-sp13_S_contig7253.18389.1|Name=mRNA_Ecto-sp13_S_contig7253.18389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp
MTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEETDKDSGEAAA
RHTGRGGARGDDGGAAVSYDTDDSDGGGGGGGFDDVPGSDDASVDGGGDL
GGGGDDEGHDLNLGGGGGGDDDDADPFQADNGSGFGGGGGTSFLVDGDGE
FGAGLGSGGGADSSESGGVGGVGMVVTPVTLEDRLCVDMKA
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mRNA from alignment at Ecto-sp13_S_contig7253:4869..7633-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7253.18389.1 ID=mRNA_Ecto-sp13_S_contig7253.18389.1|Name=mRNA_Ecto-sp13_S_contig7253.18389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7253:4869..7633- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGAATGACGAATATTAAGGACCTCCGTTCGACGCTCTTCTCCCTCTG
CGGAGACTTGTCGGTTTGTGGACTCATTTGTGGCGCTCTTTAGGTGGTGT
GTATTCCATGGGACATTCCATGGGACGCGAGAGAATGTCACCACGGTATT
GTTTGTGTCTGTGTGCCAGCGATAGGATGTTGACGGGTATCAAGAACCTT
CGGTCGAGGCTTTTTTTCCCTCTGGGAGATTTGACGGTTAGTGGACTTTT
CTTGTGGCAGTCTTAGGTGGTGTGCATTCCATGGGACGCAAGAGAGTGTC
ATCACGGTATTGTGTACATTCCACGGGACGCAAGAGAATGTAACCACGGT
ATTGTATACATTCCATGGGACGCAAGAGAATGTAACCACGGTGTTGTGTC
TGAGTTCCAGCGTTAGGATGTTGACGGGTATCAAGAACCTTCGGTCGACG
CTGTTCTCCCTCAGCGGAGGCTTGTCGGGTACCGTAAGGATGCGAGAGAA
CGCACGGGGGCGTCATCGTTTTTCATACCGTGATTTCTCCACAACCAGGA
GGTTACCACTGCCGACAGTTTTTTCTTCGGAAATTTCACGTCGAGGGCTT
TCCTGAGAGGTATTGGTTGGTGTTCGCACCCTCCTGGTTGTGGAGAAATC
AAGCTTTGAAAAACGCTAACGCCCCCGTGTGTTCGCTCGCATCCTTTGGT
GAGTGGGTTTATTGGTTGCAGGTTTAGGTGGTGCACATTTAGTAGATGCA
CGGCGCGACATGTACCCGATATGTTTCGGCGAGACGCGCTTGACCGATAC
GAAGGGCCTACGAGCTTCCTCCCTCTGCAGAGATTCGTTCGTCTGAATAC
CTTAATTTCGTTCTCGACCGACATCCTTATCTTATCCCCTCCTTCTTGTC
CGACCGTCCTATCCCTCCCCGTAGACGTTGGCCCTGTGTCCCCAGCTGGA
AGAGTTCCGCGACCAGATCGCGGAGATAGAAGAAGAAACTGACAAGGACA
GCGGCGAAGGTGAAGTGACAGGCACCTCCGGCCCTCAGCCTGCATCTCCT
TTCCTGTTGACGGAGTCGAAGATGGAATTGTTAATGTTGGGATCAGTGTT
GTGGTGCTGATGCTGGACTTTCGGTGTGTGTGTTTTTACGTCTTTTTTTG
TTCCTTTTTCTTGTCTTGACTGGAAGTCAGCTCTCACGGCAATTGTGCCG
TTTACTCCAACCCGTGTGGTCACACAGATGCTCATCGGGGCACAATGCTA
TGTTTCATGAAGATATAACAATGTATGGGGGGACACATAGCCTTCAAGAT
ACCTTGCCCGCTTCAAGGGCGCAATTTATTTGAACAACAACCCTTAGTGT
GAGTGCCCTTAAAAGCAGGACCATCGTATACATACATCAGCTCACGAATA
CACCCGCCAACGAGCTCGTCCTCCCTTCAAACAGCAGCCGCTCGGCACAC
CGGAAGGGGAGGGGCGCGTGGTGATGATGGTGGTGCGGCGGTAAGCTACG
ACACAGACGACTCTGACGGAGGAGGCGGGGGGGGAGGTTTCGACGACGTC
CCCGGGTCGGACGACGCCTCTGTGGACGGCGGGGGAGATTTAGGGGGAGG
CGGTGATGACGAGGGGCACGATCTCAACCTCGGTGGTGGTGGTGGTGGTG
ATGATGACGATGCGTGAGTGGAGAGGAGCTGCGCTACTGCTGCTGTGTCT
ATTTTTTTTTTCGTCGACAGCGTTGGTTGAGATGGAGCGCCGGTGTGCTG
TGGTTCTTGCCAGATTCCAACCTCGGTGGTGGTGTTGATGGCGACGCGTG
AGTGTAGTATAGCTGCGCTGCTGTGCCTATTTTAATTATTGCCTACAGAA
TTGGTTGAGATGGGGCGCTGGCGTGGCGTTTGCTGGTGTTGGTTATGATG
TTGGCGCGTGAGCGTGGTGTCGTTGTTTCTGCGACTTGTTTTTTGCAGCG
CTTGAGAACTCAGGAGTTAAGAAGATGAGCCTCGTAAAAAACGAAATTTC
AGAACTTGGGTTCCATTTTTTAGCACGGTTAAGAACCCCTACACAAAATA
AATCCTTTATATCAACCACGTGCAACATGACCCTAGACAGGAAATAAGAA
CCCCTGCCTCGGCCGAAACTAAACAGAGGTTCTTACGTGGTGGTGGCGAG
TTCTGTAGAGTGTCATGCGTTTTGTTTTTTTGCACTAGCGCCTTTTTCCT
GGCCATGACTCCACCGTCACCCATGAACAGAGACAGCCTACGTATACGCA
GGCGCGTTGGTCCCTGTTTTTTTGTTTCCATTTGTTTCAGTGAGCATACT
TTGCTGAGTAATTGTCCTGGGGGGCATCACGATCGTGCACGCATCGATTT
CGGGCAGAAGTCTTGTCCAGCAGTAGTCGCATGATTTTTCGATCACGTAA
ACACGTTGGATAAGGAATGCAATCGGGGAAGTTGGGTTAGGGTTAGGGAA
TAGGGTCTACGTACCCCCTCCCTGTTCTATTTCCTCATTAACTTAAATAT
CTCGCGAAGGGGGTCCCTCTTGTTGTCTTACCTCTACCCCCCTCCACCAC
ACACCATCTACAGGGACCCCTTCCAGGCTGACAACGGGAGTGGGTTCGGC
GGCGGCGGCGGAACCTCTTTCCTCGTGGATGGCGATGGGGAGTTCGGAGC
TGGGCTTGGGTCTGGTGGCGGTGCGGACTCGTCGGAGTCGGGTGGGGTGG
GTGGGGTGGGGATGGTGGTGACGCCTGTTACCCTTGAGGACAGGCTTTGC
GTCGACATGAAGGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7253:4869..7633-

>mRNA_Ecto-sp13_S_contig7253.18389.1 ID=mRNA_Ecto-sp13_S_contig7253.18389.1|Name=mRNA_Ecto-sp13_S_contig7253.18389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7253:4869..7633- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAATATTAAGGACCTCCGTTCGACGCTCTTCTCCCTCTGCGGAGA
CTTGTCGACGTTGGCCCTGTGTCCCCAGCTGGAAGAGTTCCGCGACCAGA
TCGCGGAGATAGAAGAAGAAACTGACAAGGACAGCGGCGAAGCAGCCGCT
CGGCACACCGGAAGGGGAGGGGCGCGTGGTGATGATGGTGGTGCGGCGGT
AAGCTACGACACAGACGACTCTGACGGAGGAGGCGGGGGGGGAGGTTTCG
ACGACGTCCCCGGGTCGGACGACGCCTCTGTGGACGGCGGGGGAGATTTA
GGGGGAGGCGGTGATGACGAGGGGCACGATCTCAACCTCGGTGGTGGTGG
TGGTGGTGATGATGACGATGCGGACCCCTTCCAGGCTGACAACGGGAGTG
GGTTCGGCGGCGGCGGCGGAACCTCTTTCCTCGTGGATGGCGATGGGGAG
TTCGGAGCTGGGCTTGGGTCTGGTGGCGGTGCGGACTCGTCGGAGTCGGG
TGGGGTGGGTGGGGTGGGGATGGTGGTGACGCCTGTTACCCTTGAGGACA
GGCTTTGCGTCGACATGAAGGCA
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