mRNA_Ecto-sp13_S_contig7241.18375.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7241.18375.1
Unique NamemRNA_Ecto-sp13_S_contig7241.18375.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7241.18375.1 vs. uniprot
Match: D7G898_ECTSI (Ribosomal large subunit pseudouridine synthase D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G898_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 3.560e-36
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = -1 
Query:  145 RRREEERDEWRRTEAPFPKPKQPLRQERHRKKGTMCPTSALIGDDRRGAVSVRCCL*LWGFGWSAQRKTAD 357
            RRREEERDEWRRTEAPFP PKQP RQE+HRK GTMCPTSALIGDDRRGA+SVRCCL LWGFGWSAQR+T D
Sbjct:  167 RRREEERDEWRRTEAPFPMPKQPRRQEQHRKNGTMCPTSALIGDDRRGALSVRCCLQLWGFGWSAQRRTVD 237
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7241.18375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G898_ECTSI3.560e-3688.73Ribosomal large subunit pseudouridine synthase D n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7241contigEcto-sp13_S_contig7241:5076..5432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size357
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463991.858721-CDS-Ecto-sp13_S_contig7241:5075..54321681463991.858721-CDS-Ecto-sp13_S_contig7241:5075..5432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7241 5076..5432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7241.18375.1prot_Ecto-sp13_S_contig7241.18375.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7241 5076..5432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7241.18375.1

>prot_Ecto-sp13_S_contig7241.18375.1 ID=prot_Ecto-sp13_S_contig7241.18375.1|Name=mRNA_Ecto-sp13_S_contig7241.18375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
HLAVDVPYSNLSLTRGLRLYMLLVAWLQISIFMPPARRPCQFRISNDSIS
CFSLSTPTEPPQLQTTPHAHGSPPVIANQGRGGAHCPLLPVPLLSQWLLR
LRERCFRPPPLVPLLLPPP
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mRNA from alignment at Ecto-sp13_S_contig7241:5076..5432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7241.18375.1 ID=mRNA_Ecto-sp13_S_contig7241.18375.1|Name=mRNA_Ecto-sp13_S_contig7241.18375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7241:5076..5432+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATCTTGCTGTTGATGTTCCATATTCAAACTTGTCGTTAACCAGAGGCCT
TCGACTGTACATGTTGCTTGTGGCTTGGCTGCAGATTTCTATTTTTATGC
CACCTGCCCGACGGCCATGCCAATTTCGAATATCGAATGACTCAATCAGC
TGTTTTTCGTTGAGCACTCCAACCGAACCCCCACAGCTACAAACAACACC
GCACGCTCACGGCTCCCCTCCGGTCATCGCCAATCAAGGCCGAGGTGGGG
CACATTGTCCCCTTCTTCCGGTGCCGCTCCTGTCTCAATGGCTGCTTCGG
CTTCGGGAACGGTGCTTCCGTCCTCCTCCACTCGTCCCTCTCCTCCTCCC
GCCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7241:5076..5432+

>mRNA_Ecto-sp13_S_contig7241.18375.1 ID=mRNA_Ecto-sp13_S_contig7241.18375.1|Name=mRNA_Ecto-sp13_S_contig7241.18375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7241:5076..5432+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATCTTGCTGTTGATGTTCCATATTCAAACTTGTCGTTAACCAGAGGCCT
TCGACTGTACATGTTGCTTGTGGCTTGGCTGCAGATTTCTATTTTTATGC
CACCTGCCCGACGGCCATGCCAATTTCGAATATCGAATGACTCAATCAGC
TGTTTTTCGTTGAGCACTCCAACCGAACCCCCACAGCTACAAACAACACC
GCACGCTCACGGCTCCCCTCCGGTCATCGCCAATCAAGGCCGAGGTGGGG
CACATTGTCCCCTTCTTCCGGTGCCGCTCCTGTCTCAATGGCTGCTTCGG
CTTCGGGAACGGTGCTTCCGTCCTCCTCCACTCGTCCCTCTCCTCCTCCC
GCCGCCG
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