mRNA_Ecto-sp13_S_contig7237.18367.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7237.18367.1
Unique NamemRNA_Ecto-sp13_S_contig7237.18367.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7237.18367.1 vs. uniprot
Match: D7FGR5_ECTSI (Transcription factor prr1 (Pombe response regulator 1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR5_ECTSI)

HSP 1 Score: 548 bits (1413), Expect = 1.660e-192
Identity = 295/337 (87.54%), Postives = 307/337 (91.10%), Query Frame = 1
Query:    1 PHYEMHGVNEIHGQHFRHHPPGAKHKENAEQAKMVPAHMAANPHSSPVTPELHGGAGYPTPQGGPGMMGNPALTASTPAAGGGHTTPGTQAATAMSNMSLSPMPHASNAWSPQQPGQGVDALTLTPAFAGPGVGDGDDAASGPXXXSGG---SLNEKHLGMGKQGSGXXXXXXXXXTSSGGSGERTGMRMAYWQKNRNRRTLSAQLVFPVQPPNNTEAIEQPDPSLCDVMDVICQCMEVQSSSESQLSALSGCSFKKDSMRRSSISDLLNCMSWESALRGSGIFRESLAGTLDGTFMEEQGDTADSGGGGIPPTSAPTFGQQPSFDPTREPLGEDAG 1002
            PHY+MHGVNEIHGQHFRHHPPG K+KENAE+AKMVPAHM ANPHSSPVTPELHGG GYPTP G PGMMGNPAL AS PAAGGGH TPGTQAATAMSNMSLSPMPHASNAWSPQQPGQG+DALTLTPAFAGPGVGDG DA SGP    GG   SLNEKH GMGK GSG XXXXXXXX SSGG GERTGMRMAYW+KNR RRTLSAQLVFPVQPPNNTE I+QPDPSLCDVMDVICQCMEVQSSSESQLSALSGCSFK++SMRRSSISDLLNCMSWESALRGSGIFR SLAGTLD  +MEEQGDTADS GGG+PPTSAPTFGQQPSFDPTR+P GE +G
Sbjct:   71 PHYDMHGVNEIHGQHFRHHPPGVKNKENAERAKMVPAHMTANPHSSPVTPELHGGVGYPTPHGVPGMMGNPALAASAPAAGGGHMTPGTQAATAMSNMSLSPMPHASNAWSPQQPGQGIDALTLTPAFAGPGVGDGGDAVSGPG--GGGPAESLNEKHQGMGKLGSGGXXXXXXXXPSSGGGGERTGMRMAYWEKNRKRRTLSAQLVFPVQPPNNTETIDQPDPSLCDVMDVICQCMEVQSSSESQLSALSGCSFKRESMRRSSISDLLNCMSWESALRGSGIFRGSLAGTLDAMYMEEQGDTADSRGGGVPPTSAPTFGQQPSFDPTRDPSGEGSG 405          
BLAST of mRNA_Ecto-sp13_S_contig7237.18367.1 vs. uniprot
Match: A0A6H5JIP5_9PHAE (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIP5_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 1.320e-74
Identity = 125/141 (88.65%), Postives = 128/141 (90.78%), Query Frame = 1
Query:    1 PHYEMHGVNEIHGQHFRHHPPGAKHKENAEQAKMVPAHMAANPHSSPVTPELHGGAGYPTPQGGPGMMGNPALTASTPAAGGGHTTPGTQAATAMSNMSLSPMPHASNAWSPQQPGQGVDALTLTPAFAGPGVGDGDDAAS 423
            PHYEMHGVNEIHGQHFRHHPPG K KENAEQAK+VPAHM +NP SSPVTPEL GGAGYP+P GGPGMMGNPALTA  PA GGGH TPGTQAATAMSNMSLSP PHASNAWSPQ PGQGVDALTLTPAFAGPGVGDG DAAS
Sbjct:  146 PHYEMHGVNEIHGQHFRHHPPGVKTKENAEQAKVVPAHMTSNPCSSPVTPELQGGAGYPSPHGGPGMMGNPALTACAPATGGGHMTPGTQAATAMSNMSLSPTPHASNAWSPQ-PGQGVDALTLTPAFAGPGVGDGGDAAS 285          
BLAST of mRNA_Ecto-sp13_S_contig7237.18367.1 vs. uniprot
Match: A0A6H5JGA8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 8.230e-25
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 1
Query:  805 MSWESALRGSGIFRESLAGTLDGTFMEEQGDTADSGGGGIPPTSAPTFGQQPSFDPTREPLGEDAG 1002
            MSWESALRGSG  RESLAGTLDGTF+E QGDTADSGG GI PT APTFGQQPSFDPTREP+G+ +G
Sbjct:    1 MSWESALRGSGTCRESLAGTLDGTFLE-QGDTADSGGRGISPTGAPTFGQQPSFDPTREPVGDGSG 65          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7237.18367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FGR5_ECTSI1.660e-19287.54Transcription factor prr1 (Pombe response regulato... [more]
A0A6H5JIP5_9PHAE1.320e-7488.65HSF_DOMAIN domain-containing protein (Fragment) n=... [more]
A0A6H5JGA8_9PHAE8.230e-2583.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7237contigEcto-sp13_S_contig7237:1..7642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1002
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-04_001150.1
Cds size990
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7237.18367.1prot_Ecto-sp13_S_contig7237.18367.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7237 1..7630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463991.1966019-CDS-Ecto-sp13_S_contig7237:0..1421681463991.1966019-CDS-Ecto-sp13_S_contig7237:0..142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7237 1..142 -
1681463991.2064712-CDS-Ecto-sp13_S_contig7237:426..4941681463991.2064712-CDS-Ecto-sp13_S_contig7237:426..494Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7237 427..494 -
1681463991.2149348-CDS-Ecto-sp13_S_contig7237:1102..12211681463991.2149348-CDS-Ecto-sp13_S_contig7237:1102..1221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7237 1103..1221 -
1681463991.2228096-CDS-Ecto-sp13_S_contig7237:3068..34021681463991.2228096-CDS-Ecto-sp13_S_contig7237:3068..3402Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7237 3069..3402 -
1681463991.2319446-CDS-Ecto-sp13_S_contig7237:5471..57021681463991.2319446-CDS-Ecto-sp13_S_contig7237:5471..5702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7237 5472..5702 -
1681463991.2404284-CDS-Ecto-sp13_S_contig7237:7534..76301681463991.2404284-CDS-Ecto-sp13_S_contig7237:7534..7630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7237 7535..7630 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463991.2489843-UTR-Ecto-sp13_S_contig7237:7630..76421681463991.2489843-UTR-Ecto-sp13_S_contig7237:7630..7642Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7237 7631..7642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7237.18367.1

>prot_Ecto-sp13_S_contig7237.18367.1 ID=prot_Ecto-sp13_S_contig7237.18367.1|Name=mRNA_Ecto-sp13_S_contig7237.18367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=330bp
MHGVNEIHGQHFRHHPPGAKHKENAEQAKMVPAHMAANPHSSPVTPELHG
GAGYPTPQGGPGMMGNPALTASTPAAGGGHTTPGTQAATAMSNMSLSPMP
HASNAWSPQQPGQGVDALTLTPAFAGPGVGDGDDAASGPGGGSGGSLNEK
HLGMGKQGSGGSGGSGGGGTSSGGSGERTGMRMAYWQKNRNRRTLSAQLV
FPVQPPNNTEAIEQPDPSLCDVMDVICQCMEVQSSSESQLSALSGCSFKK
DSMRRSSISDLLNCMSWESALRGSGIFRESLAGTLDGTFMEEQGDTADSG
GGGIPPTSAPTFGQQPSFDPTREPLGEDAG
back to top

mRNA from alignment at Ecto-sp13_S_contig7237:1..7642-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7237.18367.1 ID=mRNA_Ecto-sp13_S_contig7237.18367.1|Name=mRNA_Ecto-sp13_S_contig7237.18367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7237:1..7642- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCACTACGAGATGCACGGGGTGAACGAGATTCACGGGCAGCACTTCCG TCACCACCCCCCCGGGGCCAAGCACAAGGAGAACGCCGAGCAAGCGAAGA TGGTGCCGGTGAGATTGGTAGATGGTGCCGTTGAGATGGATAGGATAGAT AAATGGTGTCGGTGAGGTAGATAGATGGTGCCGGTGAGATGGACAAATGG TGCCGGTGAGGTAGATAGATGGGGCGGGTGAGAGGGACAAATGGTGTCGG TGAGGTAGATAGATGGTGCCGGTGAGATGGATAAATGGTGCCCATGAGGT AGATAGATGGTGCCGACGGGACGGACAAATGGTGCCGGTGAGGTAGATAG ATGGTGCCGGTGAGATGGACAAATGGTGCCCATGAGGTAGATAGATGGGG CCGGTGAGATGGATAAATGGTGCCGATGAGGTAGATAGATGGTGCCGGTG AGATGGATAAATGGTGCCGATGAGGTAGATAGATGGTGCCGGTGAGATGG ATAAATGGTGCCGATGATGCAAAAAGATGGTGCCCGTGAGACGGATAGGG TAGATAAATTGTGTCGGTGAGATAGATAGATGGGTGCCGATGAGATGGAT ACATGGCGCCGGTGAGATGGATAAATGGCGCCGCAAATATTTGTCGCCGT CTCTTTGCAGGCGCTTTTTCTGTTGGTGCTTGTTGTGGAAATGCTGCTGT TCCTCTGTTTGTTGTTGATGTGGTGGTGGTGTTGTTGCTTCTGGTGGTGG TCGTTGTGTTGGTGGTGCGGTGGGGGGCGTGTCCTCATGTTTGGCTTGCC TTAGCGGTTGGGCCATTGACCACGCGCCCTCGAGAGGACGGAGCATTGTT CCCACAGGAGCGATCACCGATGGCCAGTCGTTCCTTCCTGCTTTAACAAA GGTGGCTCAAAAATGTCGTCCCTAGTTCATCTTTCGTACGGATATCGCTT CCAGCTTTTTCAACCCACTTCCTATGCTCCAGTACAGCCAACGTCCCCTC CTGGCTATGACGAGTCGGGGGGGGGTCAAAAAGGAGGAGTTTTATTTTAT CGACCTTTTTTTCATCAGTAATTTTCGTTTTCGGTACACAACGGAACAAA GTCGCCGTCATAAACTACATCAAACTCCTCGAGCGGTCCCAAAATACGCT CTCCTTTATTAGCAGTTCCCCCATTTTACCGCCATGGGGGAACAGGAAAC CGTATATAATTTGAGAAACAGCAGTGTCGGGTCAAGACTGGCTCAACGAA CGACCAAATTACTAAAGTGTGAGAGTGTGTTTCTTTAATTTTTGAGTTTT TTGGACGCCATAAATATATCGTGCCTCGTCGCCGCCACTATCGAGTATTG TACCAGATACAAATCTGCTGTGTTGCTCACGTTCCAGATTGTCTTGGTTT CCTTCGCAGCATTTTTACTGGCCGCGAGGATCCTAGGGCCTTGTTCTCAT GTGCGGGGACCCTCACTCGTGGGTAGTGTGCGCCTTAACTATTTCATCGT TACGGCCCTCTTTCTCATCTGCTTGTGCGGCGTTTTTGTCTTAAATTGAA ACGGTCCTCTTCTCATCTGTGGAGACCCTCACTTGTGCGGCTTTTTTTCT TCCATTTTAACGGCCCTTCTTCTCATCTGCGGGGGCCGTCGCTTGCCGTA CCCCTACTATTCCCGCAGGCCCACCTGACGACAACCCCCCACTCGTCACC GGTGACCCCGGAACTCCCGGGAGGCGTTTTCCTCTACTTGTAACGGTTTT GTTATCTACGAACTACGTGTACCTCCGCCTGCCGTACCCCTACTATTCCC GCAGGCGCACGTGACGGCAAACCCACACTCGTCGCCGGTGACCCCGGAAC TCCCGGGAGGCGTTTTCCTCTACTTGTAACGGTTGTTTTATTTACGAACC ACGTGTACCCCCGCCTCCCGTACCCCTACTATTCCCGCAGGCGCACATGG CGGCAAACCCCCACTCGTCGCCGGTGACCCCGGAACTCCACGGCGGGGCG GGTTATCCAACGCCCCAGGGGGGGCCCGGGATGATGGGAAACCCTGCCCT CACTGCCTCCACTCCCGCTGCCGGCGGTGGGCACACGACCCCCGGCACCC AGGCGGCCACGGCGATGTCGAACATGTCGCTGAGCCCGATGCCGCATGCC AGCAACGCGTGGTCACCGCAGGTGTGTTTGCGTGTGTCTTTATCATTAGC ATCGAGCGCGCTAACCGGCTGACCCATGAAAAGACGTCAGTCTTAGTGCG GTTGAAACCACAAAACATTTCTATCTGCCATGTACTGGGACCCCATGAGG GGGCAGCATGGGGGAGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTTTTGTTTTCATCG ACCACGCTAACCGGCTGACCAGTGAAAATACGACAGTCTCATTACGGTTG CGGTTGAAAACACAAAACACTTCTAAACGTAATTAAGTTGGACCCCGTGA GGGGGCGGTATGGTAGAGGTTTGGCAATTCTCCGGATTAAAGACAGAAGC AGTAGCGAAAGAAGAAGCCTGCACGTGTCTACCAAAGCTGCTGCCTTGTA CTCGAGTTCGTTTTGGGTGCTTTCACCATCATCTTCCTTGCTTTGACTCA TCATCGTTTTGACAGCGACATCATTTTGACAGCGATTTTTCGGCAGTTCT TCCCTGGCCCTGCGTCGTTTGTTGTGGGGAAGGTCATCTGGCTCGAAGCT CTTGCTCTCTCTCCCACGCCACGAATCCCTCCTCGACTGCTGCTTTGGTC TATGTCTTGTACTCCCGTTCCCTCTCCTCCTCCTCCATCGCTGCCAAAAA AAATCCCTCATTGCCATCATGATCGTTTTTATCTACACTACTGTACTGAG ATCCCAACCTATTGCCGGTGGTGGAAGTTAACCAATCAGCACTTATACGT GACGTTTACATCACGAGTTCGACTGAGAGGAAACATCACGAGTTCGAAGG TAAACCGTCGCTGAATCCTAATGGTATGATCAGCCATCAGGCGAAGCAAG GCTGTTTCGTCGTCGAAATTCCTCTTGCGAAAGGCTTCATATACCGAGAG TAGTTGTCGATAGCTACGATATGTCGATTGGTGCCTTCGCCAAGACTGCC ATACTTTGAGAAAGCAGCAGCAAGGAAGACGGGTTGGCAGTTCCCGCAAG AGTGATTTGCCTTGCTTGCAGCTCGATCTTCGAGGGCGGCTCCTGGCTTT TGGATTGACTTGTCAACGCTTCGACTAGCGGATGGGTCAACAGTTGTGAC ATCTATAAGAATGGACTTGGTGCGGAGTTCCTCTTCTCCACCTCCTGCGT GTAATCCTGGGGGGATCACCAATTCCATCTTGCAGGGCCCTTTTCCCCTA CCAGTGCCTGTAGTAAAAGTGGAAGAGTCTTCAACTGCGATTGGCATGTG CCACTCGCAGTTGAAGACTCTTCCTCCATTTACCACAGGCACTTGTAGGG GAAAAGGGCTCTGCAAAGTGGTTTTGGTGATCCCCCCAGGATTACACGCA GGAGATAAAGAAGAGGAACTCTGAACCAAGCTCATTCTTGTGGATGTCGC AATTGTTAACCCATCCGCTGGTCGAGGCGCGTGGTGTTGAAGACACCACG CGAGTGCCACATTTTAATCCCTATCAAAGACTCCTCCCCATTTTCCACAG GCACTGGTGTGTGCGTGTGTTTGTTAGGATCGACCACGCTAACTGGCTGA CCAATGAAATGACGTCAATCTCTGTGCGGTTGAAGATACGAAGTGCTTCG GAAGGCCATGATCTCTGCGTGTTGTTTGTGTGTTTCTGTTTTCTTTGTGG GTGGCATGTTTAATGTTTGCATCGACCGCGTTACACACTAGGCTTAAGCA CTGGATAGAGGACTGTCTTAGCGTCTTCTTATCGGCGGATATAAGTACAC AAGGGTTTTGGGCTTATCTTGAATAGCCTTGGATTGAAGACCGTTCCTTC GGTCCTTCCTATGTTATTGGTCATGGCCAGCAAGTCAATTTTTGTGCTGT GTTTTATTTGAAGAGCCAGCTGCTAGCCAAGCCTGATGGTCTGGTCATAC GGATAAATGAAGCGGACGTTTTATCATCACCTCAACAGCAATCATTCCTT GTGCCAGGCCTGAAGAATAGTCTTCATCAGTAAAATAAGCGCGCAAGTGT TTTCATTATCGTCGTAACTATCGACCATCCCTTCTGGCAGCAGCCCGGGC AGGGCGTAGACGCCTTGACGCTCACGCCGGCGTTTGCCGGCCCTGGCGTG GGTGACGGGGACGACGCAGCATCAGGACCTGGAGGAGGGTCGGGTGGAAG CTTGAACGAGAAGCACCTGGGCATGGGAAAGCAGGGCAGCGGGGGCTCCG GCGGGAGCGGGGGGGGGGGTACCAGCAGCGGGGGCAGCGGGGAGCGCACG GGGATGCGCATGGCGTACTGGCAAAAGAATCGAAATAGGAGGACCCTATC GGCACAGCTCGTGTTCCCGGTGCAGCCGCCAAATAACACGGAGGCAATCG AACAGCCCGATCCAAGTCTTTGCGGTGAGGTTTTTATTTTATTTTATTTT TGTCGAGTACAATCCCATTTTTTTCTTTAGTTTTCGAATGCATAAGACCC GCCTTTTTTTTTTCTCCCGTGGCGTGCGGGTTGATTTTCTTGGTTTTGCT TGTTTTCGTTTGTTTGACCCCATGAAGTTGGGGCCGTTACCTTTGACACA GGTTCGATCTACTACGTTTATGACCTGATGGGGCCATTTGGACCCCATCC TCCACAACATGTTGCGATTTCGCCACACCGGATTGGCTGTCCGATGTGTT GTTCAGTCTTGCTGGAGTCGCCTCCTCCTCGTCCCGTTTAATTTGAGCAT GCGCTGTTTGAGTGGGGTCGGTAGTTTTTGACAGACCGACCGGCATCTGT ACGTACGTGTGCCGAGGACCTGCGTGCTGCATGGTAGCAGCGTTCATGTC GGCGTGACCGCATGCAGTGCGGCAGACGACGCGAACATGGTCGATTTTAC GCGGGGACACAAGGCTGTAGTCCCCCCCCAACCACCGTGCTCAATACTGC CGTCTGATCGACAACAACCCTGTTGCTTGCGCCTGCGAGTTGCGTATGCC CGCCGGCCTGCTGGCTTTTGTCAATAGAAAGTCACGATGAGGTTGCGTCG TTTGTCGTAACTGCTTCAGGCAGCAGCAGAAGATCGAATAGCCGGGGTCC CGGCCGTTACCGTCGTGCCGTCTGTTGTTTTTTTCCGGTGTTCCTATTTG TTGTACACCCTGGATCGACTTCCAAAGCTCGATTACTCCGCAGCAGTAAC AGTGACGACGGTGCTAAGATGCATGGCCACGCCGTAGCTGTCTCGTCGAG AGCTTCCGGAACACGCGAGAGTTTGCTGTAGCATCCTCTTTCGCAGTGGA GTAGTGGAGCATTGAAATACGGTTCAGGGGGTGTGGTATATCTTGTGCAG TCCACGGTATACAGACACGTGGCAGCTATCTACCTCGTAAGTGTGAGGAT TTGATTGTGGCTCACTTTTCATCGTGGAGTAATCGAGCTTTGAAATTCGG TCCAGGGGGTGTAGGTATCTTGTGCAATCCACGGTATACGGACACGTGGC AAGTTTATGAGGATTTGATGTGGCGTCCTTTTTGTCGTGCAGCGCAGCAA TCAAGCTTTGAAATTCGGTCCAAGGAGTGTGGTATCTTGTGCAAGCCACG GAACACAGACACGTAGCGGCTCAACTCGGTTAGGTACTCGATTGTGGCGT CCTTTTCGCCGTGGAGTACCACGGATTGGAGACACATGCGGCTGCCATCT CATACCAGTATTTATTGTGGCATCCTGTTCGGAGTGGAGTAATCGAGCTT TGAAGTTCGAAGTAAAGAATAACTTGGCGGATTACGCTCTCTTGTTCTCT CGCTGACGGCTGCATACGCCGACCCTCGGGCCCGATTGTCAGATGAGGTA TGCACATCACAGACGAATGTCGGTTTCTTTGGTTTTACGTACAACATGAA GAACACGTAGCCGTTGGTGACACAAGATATCACGCACCATACGAGTGATT GTCTAAGCTCAATTTCTTCATAGAATGATCTTGTCGTGTAGTCGTGAGTC TGAAAATGTATGCAGAGGGTGTGTGCGATGTGTTGTGTCACGTGGTGCAG CAAGTTATTTTGCCGGTTGGAAAGGAACTCAAAAAACAAAAAAATGTCTG AAAACATGGCAAGGGCACATCTGCACCCGAGTTGTAGGGAGTCATCACAA AATTGTCATGAAGTCGTGCGCGGCGCTTCGTGAAGAGGTGAAAGGCACAG GCCGTTATTTGTTACTTCGAATCCGCCGCTCTCTTCCTCTCGCTGCCGTT CTCTCTCTTGTTTTTTCAAAGACGTGATGGACGTGATCTGCCAGTGCATG GAGGTCCAATCGTCCTCCGAGTCGCAGCTGTCAGCGTTGAGCGGGTGCTC CTTCAAGAAGGATTCCATGAGACGATCGAGTATATCTGATGTAAGTGCTC GGGGACCCCCCACCCCTGCCCCATCCCCTCATACACATTTTGCGTCGATA GGGTTGGGGAAGGGGGGGGGGAATATGGATATGTCTGATGTGAAGTTCAT CCCCCCCCCCCCCCTGCCCTCCCCTCAAGACACATGCTGCATATTGACCG CCCATTGCTGCCAGTTGACCCTTTTACCCGCTCTGAAAGGGGGAGCTTGG GCGATTGGCTCGAGGAAGACGGAGGCCACCTCCTCATGTGTGTTCGGGAA TTTCGCTCCCATGTCATTTTACCTTTTTCGGCGTTTGTTGGAAGTATTAG TGACCACGCACGCAGAAGCTTTGGACTGGTTTCGTGCGAACGTCAGAAGG TATACTGCTGGGGGGAGACCGGAAACGGTTTGATTGTGTTGATGAAGGCA ACAACAATATCGATGTTCGTTAATTGACGCGTTCCAGTTTGGTGTCGTTT GTCTTTGTGCCCCCGCAGCTGCTAAGCTGCGTGCCCTGGTGATTGTGTGA AGACAACAAGAACATCACCAACAACAAGAGCGATCGTCCTCTTGCATCTT TTGTATCTTTCCAACTTGGCAATGCCTTCCATCCTTTGCCCCCCGCAGCT GCTAAACTGCATGTCCTGGGAGAGCGCCTTGCGAGGGTCAGGCATTTTTC GAGAGTCCTTGGCAGGGTAAGCGGGAGCCTAATTTTTTTTTTTTTTGGAA AAATATCCATGTTATTACAGAAAGACCAACGTTCGAGGCAACACCATATT CGAAAAGGATGTGTTGGGACTCTGTGTGATGCAGTACGTGGGGAGGAAAC CGGCTAAGAAACCGGGCTTGTTGCACTGAATTTTGCATTGTTTCGAGCAT TTTTGAGGGTCCTTCGCACCTTGAATTGAAGCAAATTCGTTGCAGTACTT CCTTGTTTTGTGTTTTATCCCTCTCATCTACCCTCTCACCTCGCGCTCAG GACGCTGGACGGGACGTTTATGGAGGAACAGGGGGATACGGCGGATAGCG GAGGAGGGGGTATCCCCCCCACCAGCGCCCCTACCTTCGGCCAACAGCCA TCATTCGACCCCACGCGAGAGCCTTTGGGGGAAGACGCGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7237:1..7642-

>mRNA_Ecto-sp13_S_contig7237.18367.1 ID=mRNA_Ecto-sp13_S_contig7237.18367.1|Name=mRNA_Ecto-sp13_S_contig7237.18367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=990bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7237:1..7642- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGGGGTGAACGAGATTCACGGGCAGCACTTCCGTCACCACCCCCC
CGGGGCCAAGCACAAGGAGAACGCCGAGCAAGCGAAGATGGTGCCGGCGC
ACATGGCGGCAAACCCCCACTCGTCGCCGGTGACCCCGGAACTCCACGGC
GGGGCGGGTTATCCAACGCCCCAGGGGGGGCCCGGGATGATGGGAAACCC
TGCCCTCACTGCCTCCACTCCCGCTGCCGGCGGTGGGCACACGACCCCCG
GCACCCAGGCGGCCACGGCGATGTCGAACATGTCGCTGAGCCCGATGCCG
CATGCCAGCAACGCGTGGTCACCGCAGCAGCCCGGGCAGGGCGTAGACGC
CTTGACGCTCACGCCGGCGTTTGCCGGCCCTGGCGTGGGTGACGGGGACG
ACGCAGCATCAGGACCTGGAGGAGGGTCGGGTGGAAGCTTGAACGAGAAG
CACCTGGGCATGGGAAAGCAGGGCAGCGGGGGCTCCGGCGGGAGCGGGGG
GGGGGGTACCAGCAGCGGGGGCAGCGGGGAGCGCACGGGGATGCGCATGG
CGTACTGGCAAAAGAATCGAAATAGGAGGACCCTATCGGCACAGCTCGTG
TTCCCGGTGCAGCCGCCAAATAACACGGAGGCAATCGAACAGCCCGATCC
AAGTCTTTGCGACGTGATGGACGTGATCTGCCAGTGCATGGAGGTCCAAT
CGTCCTCCGAGTCGCAGCTGTCAGCGTTGAGCGGGTGCTCCTTCAAGAAG
GATTCCATGAGACGATCGAGTATATCTGATCTGCTAAACTGCATGTCCTG
GGAGAGCGCCTTGCGAGGGTCAGGCATTTTTCGAGAGTCCTTGGCAGGGA
CGCTGGACGGGACGTTTATGGAGGAACAGGGGGATACGGCGGATAGCGGA
GGAGGGGGTATCCCCCCCACCAGCGCCCCTACCTTCGGCCAACAGCCATC
ATTCGACCCCACGCGAGAGCCTTTGGGGGAAGACGCGGGG
back to top