mRNA_Ecto-sp13_S_contig72344.18365.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72344.18365.1
Unique NamemRNA_Ecto-sp13_S_contig72344.18365.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72344.18365.1 vs. uniprot
Match: D7FMC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC5_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 5.090e-23
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 FYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 138
            FYPYEFILGTMLHELVHNQIGPHSA FYRMLDQLNDECDKLI+EG+
Sbjct:   84 FYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGI 129
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BLAST of mRNA_Ecto-sp13_S_contig72344.18365.1 vs. uniprot
Match: A0A6H5J6X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X1_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.590e-21
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 FYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 138
            FYPYEFI+GTMLHELVHNQIGPHSA FYR+LDQLNDECDKL +EG+
Sbjct:  129 FYPYEFIIGTMLHELVHNQIGPHSAKFYRVLDQLNDECDKLTREGI 174
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BLAST of mRNA_Ecto-sp13_S_contig72344.18365.1 vs. uniprot
Match: A0A699ZDJ0_HAELA (WLM domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZDJ0_HAELA)

HSP 1 Score: 75.9 bits (185), Expect = 6.660e-16
Identity = 29/46 (63.04%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 FYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 138
            FYP+E +LGT+LHELVHN  GPH++ FY++LD+LNDECD+L+ +G+
Sbjct:   72 FYPFEHVLGTLLHELVHNVQGPHNSVFYKLLDELNDECDELMAKGI 117
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BLAST of mRNA_Ecto-sp13_S_contig72344.18365.1 vs. uniprot
Match: A0A0U9HKT4_KLENI (Fe2+/Zn2+ regulated transporter n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HKT4_KLENI)

HSP 1 Score: 75.5 bits (184), Expect = 9.320e-15
Identity = 27/46 (58.70%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 FYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 138
            FYP+E +LGTMLHEL HN++GPH+ANFY++LD++  EC+ L+ +G+
Sbjct:   85 FYPWEHVLGTMLHELTHNEVGPHNANFYKLLDEITKECEDLMAKGI 130
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BLAST of mRNA_Ecto-sp13_S_contig72344.18365.1 vs. uniprot
Match: A0A2P6TSD1_CHLSO (Signal peptide peptidase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TSD1_CHLSO)

HSP 1 Score: 75.1 bits (183), Expect = 1.270e-14
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 FYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 138
            F PYE +LGTMLHELVHN I PH+A FY++LD+LN ECD LI  G+
Sbjct: 1434 FLPYECVLGTMLHELVHNHISPHNAAFYKLLDELNKECDDLIARGI 1479
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BLAST of mRNA_Ecto-sp13_S_contig72344.18365.1 vs. uniprot
Match: A0A388KSJ2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KSJ2_CHABU)

HSP 1 Score: 75.1 bits (183), Expect = 1.280e-14
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 FYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 138
            F+ YE +LGTMLHELVH ++GPH+A FY++LD+LN ECD+LI +GV
Sbjct:  203 FFAYEHVLGTMLHELVHIEVGPHNAQFYKLLDELNRECDELIAKGV 248
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BLAST of mRNA_Ecto-sp13_S_contig72344.18365.1 vs. uniprot
Match: A0A5C7IJM8_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7IJM8_9ROSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.970e-14
Identity = 28/46 (60.87%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 FYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 138
            F+PYE ILGTMLHEL HN+ GPH+A+FY +LD++  ECD+L+ +G+
Sbjct:   82 FFPYEQILGTMLHELCHNEYGPHNADFYNLLDEIRKECDELMAKGI 127
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BLAST of mRNA_Ecto-sp13_S_contig72344.18365.1 vs. uniprot
Match: A0A540K4W6_MALBA (WLM domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540K4W6_MALBA)

HSP 1 Score: 72.4 bits (176), Expect = 5.140e-14
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 FYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 138
            FYPYE IL TMLHEL HN+ GPH+A+FYR+LD++  EC++LI +G+
Sbjct:   82 FYPYEQILDTMLHELCHNEHGPHNADFYRLLDEIRRECEELIAKGI 127
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BLAST of mRNA_Ecto-sp13_S_contig72344.18365.1 vs. uniprot
Match: A0A498J441_MALDO (Uncharacterized protein n=3 Tax=Maleae TaxID=721813 RepID=A0A498J441_MALDO)

HSP 1 Score: 72.4 bits (176), Expect = 1.040e-13
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 FYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 138
            FYPYE IL TMLHEL HN+ GPH+A+FYR+LD++  EC++LI +G+
Sbjct:   83 FYPYEQILDTMLHELCHNEHGPHNADFYRLLDEIRRECEELIAKGI 128
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BLAST of mRNA_Ecto-sp13_S_contig72344.18365.1 vs. uniprot
Match: B9SAJ5_RICCO (Uncharacterized protein n=3 Tax=Ricinus communis TaxID=3988 RepID=B9SAJ5_RICCO)

HSP 1 Score: 72.0 bits (175), Expect = 1.080e-13
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 FYPYEFILGTMLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV 138
            F+PYE +L TMLHEL HNQ GPH+A+FY +LDQ+  EC++LI +G+
Sbjct:   83 FFPYEQVLDTMLHELCHNQYGPHNADFYNLLDQIRKECEELIAKGI 128
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72344.18365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMC5_ECTSI5.090e-2393.48Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5J6X1_9PHAE1.590e-2186.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A699ZDJ0_HAELA6.660e-1663.04WLM domain-containing protein (Fragment) n=1 Tax=H... [more]
A0A0U9HKT4_KLENI9.320e-1558.70Fe2+/Zn2+ regulated transporter n=1 Tax=Klebsormid... [more]
A0A2P6TSD1_CHLSO1.270e-1467.39Signal peptide peptidase n=1 Tax=Chlorella sorokin... [more]
A0A388KSJ2_CHABU1.280e-1465.22Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A5C7IJM8_9ROSI3.970e-1460.87Uncharacterized protein n=1 Tax=Acer yangbiense Ta... [more]
A0A540K4W6_MALBA5.140e-1463.04WLM domain-containing protein n=1 Tax=Malus baccat... [more]
A0A498J441_MALDO1.040e-1363.04Uncharacterized protein n=3 Tax=Maleae TaxID=72181... [more]
B9SAJ5_RICCO1.080e-1360.87Uncharacterized protein n=3 Tax=Ricinus communis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72344contigEcto-sp13_S_contig72344:8..145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score75.9
Seed ortholog evalue4.4e-12
Seed eggNOG ortholog2880.D7FJ82
Model size138
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010224,GO:0010225,GO:0012505,GO:0016740,GO:0016787,GO:0016925,GO:0018130,GO:0018193,GO:0018205,GO:0019438,GO:0019538,GO:0019787,GO:0019789,GO:0019985,GO:0031967,GO:0031975,GO:0032182,GO:0032183,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061659,GO:0061665,GO:0070011,GO:0070647,GO:0071704,GO:0071897,GO:0090304,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1990414,GO:1990466
Exons1
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsKOG1558@1,KOG1558@2759
Cds size108
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463991.1066113-CDS-Ecto-sp13_S_contig72344:7..1151681463991.1066113-CDS-Ecto-sp13_S_contig72344:7..115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72344 8..115 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463991.120936-UTR-Ecto-sp13_S_contig72344:115..1451681463991.120936-UTR-Ecto-sp13_S_contig72344:115..145Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig72344 116..145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72344.18365.1prot_Ecto-sp13_S_contig72344.18365.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72344 8..115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72344.18365.1

>prot_Ecto-sp13_S_contig72344.18365.1 ID=prot_Ecto-sp13_S_contig72344.18365.1|Name=mRNA_Ecto-sp13_S_contig72344.18365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
MLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGV
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mRNA from alignment at Ecto-sp13_S_contig72344:8..145-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72344.18365.1 ID=mRNA_Ecto-sp13_S_contig72344.18365.1|Name=mRNA_Ecto-sp13_S_contig72344.18365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72344:8..145- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTACCCCTACGAGTTCATTCTCGGCACGATGCTGCACGAGCTGGTGCA
CAACCAGATCGGCCCCCACAGCGCAAATTTCTACCGGATGTTGGACCAGC
TCAACGACGAGTGCGACAAGCTAATTCAGGAAGGTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72344:8..145-

>mRNA_Ecto-sp13_S_contig72344.18365.1 ID=mRNA_Ecto-sp13_S_contig72344.18365.1|Name=mRNA_Ecto-sp13_S_contig72344.18365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72344:8..145- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCACGAGCTGGTGCACAACCAGATCGGCCCCCACAGCGCAAATTT
CTACCGGATGTTGGACCAGCTCAACGACGAGTGCGACAAGCTAATTCAGG
AAGGTGTG
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