mRNA_Ecto-sp13_S_contig7226.18353.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7226.18353.1
Unique NamemRNA_Ecto-sp13_S_contig7226.18353.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7226.18353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7226contigEcto-sp13_S_contig7226:879..3071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size242
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463989.9211478-CDS-Ecto-sp13_S_contig7226:878..9741681463989.9211478-CDS-Ecto-sp13_S_contig7226:878..974Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7226 879..974 -
1681463989.9329662-CDS-Ecto-sp13_S_contig7226:1199..12411681463989.9329662-CDS-Ecto-sp13_S_contig7226:1199..1241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7226 1200..1241 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463989.947218-UTR-Ecto-sp13_S_contig7226:1241..12861681463989.947218-UTR-Ecto-sp13_S_contig7226:1241..1286Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7226 1242..1286 -
1681463989.9585137-UTR-Ecto-sp13_S_contig7226:3012..30711681463989.9585137-UTR-Ecto-sp13_S_contig7226:3012..3071Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7226 3013..3071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7226.18353.1prot_Ecto-sp13_S_contig7226.18353.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7226 879..1241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7226.18353.1

>prot_Ecto-sp13_S_contig7226.18353.1 ID=prot_Ecto-sp13_S_contig7226.18353.1|Name=mRNA_Ecto-sp13_S_contig7226.18353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
MAPRCTKEPTGRSQEDVDGWWVRRRQHPFGGGASTRLSTKAASTSA
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mRNA from alignment at Ecto-sp13_S_contig7226:879..3071-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7226.18353.1 ID=mRNA_Ecto-sp13_S_contig7226.18353.1|Name=mRNA_Ecto-sp13_S_contig7226.18353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7226:879..3071- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTGAAGATTCGGCGTAATGGCACCAAGGTGGTCACTAGAACAAACCGGG
TGATCAGAGGTAGGGTCCCGGGACACAGCCGATCCGTTTGAAATTCAGCA
AAGCAGTCGGGGTGCGAAAAGTAGCAAGGTGAACATAGATTCGGACGGGC
GTACCGCAATTTTTGCACCATTGATGAAGGGCGCACAATAATAAAAGTTG
TTGGACCCACACCATTCCCCTCAGCCGACCCGAAATATGTGTTCGTTTCA
AGTGCATTTTTCGTCTTAACAACAAAGAGTTGTTTCGCCCTGTCGAGGTC
GGTTGAATGGCAAGGCGTTGCCGAAACGATACTCAAAATACGAGCCAGTA
CCTACAGCCGCAGCGGTGGTTGTACTTCACAGCATGTTATGCATAGCCGC
AAAAGTTGACAGAAGAGGGGCGTTCACTTGAGCTTGGAGGCCGTTGTCGC
CCCCCTGATCTCGGGCCACGAAAAGTTTCAATATAATTATTGCACATTTC
GGTAGGCACGAGGTCTAGCCAAGGCTCTAAACCTAATCGATTCTCACGTT
GTTCATGCTTGGTCTGCGTGCGAACAATCGTCCTGATAAATGCTCATTAC
CTTTCTTGAACAACTACTTATACATCCGTACGATCCAACCGGTGCGGGCA
ACTCACACGGTCCCAAGGAACGGCGGAGAGACACAACAGCCACCACATTT
ACTTTATTCCAGGAACATCGTTAGCTTTGATGTTTGCTGAGCTCGTTGCA
CGACGTCGAAAACACAAGCACCAAAGGGTCGCGCTAGGTGTATACTTTCT
ATCAAGCCCGTGGTGATCTTGACCCGTTCCGAAAAAGGCCGCAAAAGATG
TCAAAAACAAACACGGTTTTTATACGCAGAGAGAGACAGTCACACACACA
ATAAACAGACCCCAACATCGGATTTTTGTTTGCCTGTTGGCAAGGCCTGT
TGAAGCCGAAATCAAACCATTAGACTAGTCAGGGCTGACTTGTGAGTAGT
AGTCTAGCCAGCGCTGACTAGCCTAATGGTTTGACTTCGGCTTCTATTCA
AGTTAGTCGTGGGGTTAGTGAGCCCCGTAACTTTCACTTCCGAGGAGGGT
AACTCCCCGTGCCAGCGCTGCTATTCGTCCAATCTTTTTTTCGCTTTATA
CATTGTCACTCGCCACCCACATCCTGCAGAATGTTCCAGGATCCACTAGT
CCTTCCGTCACCCATCCTCCGGCCTAGAGTATCCAGGGTCTAAGGGACAA
CAACACTTCAAAGTGTCCAGCCTGGGTCTCCAATCCAAGACTGACTCGCA
CACAAACAGTATTCCTGGACTCACACTCCCATTTCTTATCCATTTTGAGT
CGGGGAGGTGCAATTCGCTGTGACATGGAATTTAGGTCGAACTGTATCAC
CGTATGCATAATGGTTGTATTTCGCAAGAAATCTCTGGTATGCCTGAACT
AAAACCCTGCGTCGAAACATGGACTATTCTCCTTTTTCGGTGTTGTATGG
GTTTTAAACGGCACACAAGCCTACCACGATACACTACTTCTACCCCACTC
CACCCCAACGCATTCACTACGCAGAAACGAGGTCCCGCAGGGCAGCCCTC
CTCAAGACGCCGGGAGGGGGGAGTATATTCTTAGAAGTACAGATTAGGGT
TTAGTGCCTGTCAAAGCCGAAAAACTTCACTGATGCGAACGAGGTTGTTG
GCGACCACCCCGAGCTTGTGTCTCACACTGCTGTTTGTTCCGCGCATTTA
GTTCTTGCGCTCGTACTGATTGTGCCTGCCTGTAGGTGATACAACCACGG
AATACGAGGAGTCGGCGGAGGTTCGGCGGAATGGCACCAAGGTGTACAAA
AGAACCAACAGGGAGATCACAGGTATGTTTCCAGCAGGCATGTTTGAATT
TCCGCAACGCAGTCGGCGTGCGAATTCACTTCGTTGTTACCAGTATTGCA
TAACGAAAGGAGAACACTATCGATGAAGCGCATCTACAACGGGCGATAAA
ACGTCTGGGCATTTCCATCGCGATAGAAACTGACGTTTCGCCAATAAGTC
CACGCACATCCCCGTTCTGCGTCCCGTTCGTGGCTGCGTTGTTGCAGGAA
GACGTTGATGGATGGTGGGTACGACGGAGGCAGCATCCTTTCGGCGGTGG
GGCATCAACCAGACTTTCAACAAAGGCAGCATCGACTTCAGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7226:879..3071-

>mRNA_Ecto-sp13_S_contig7226.18353.1 ID=mRNA_Ecto-sp13_S_contig7226.18353.1|Name=mRNA_Ecto-sp13_S_contig7226.18353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7226:879..3071- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACCAAGGTGTACAAAAGAACCAACAGGGAGATCACAGGAAGACGT
TGATGGATGGTGGGTACGACGGAGGCAGCATCCTTTCGGCGGTGGGGCAT
CAACCAGACTTTCAACAAAGGCAGCATCGACTTCAGCT
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