mRNA_Ecto-sp13_S_contig7226.18354.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7226.18354.1
Unique NamemRNA_Ecto-sp13_S_contig7226.18354.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7226.18354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7226contigEcto-sp13_S_contig7226:879..6032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size807
Hectar predicted targeting categorysignal peptide
Exons6
Cds size480
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7226.18354.1prot_Ecto-sp13_S_contig7226.18354.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7226 2981..5899 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463989.7580967-UTR-Ecto-sp13_S_contig7226:878..9741681463989.7580967-UTR-Ecto-sp13_S_contig7226:878..974Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7226 879..974 -
1681463989.7778287-UTR-Ecto-sp13_S_contig7226:1199..12861681463989.7778287-UTR-Ecto-sp13_S_contig7226:1199..1286Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7226 1200..1286 -
1681463989.7897-UTR-Ecto-sp13_S_contig7226:2969..29801681463989.7897-UTR-Ecto-sp13_S_contig7226:2969..2980Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7226 2970..2980 -
1681463989.881633-UTR-Ecto-sp13_S_contig7226:5899..60321681463989.881633-UTR-Ecto-sp13_S_contig7226:5899..6032Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7226 5900..6032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463989.8008945-CDS-Ecto-sp13_S_contig7226:2980..30991681463989.8008945-CDS-Ecto-sp13_S_contig7226:2980..3099Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7226 2981..3099 -
1681463989.8120291-CDS-Ecto-sp13_S_contig7226:3820..38831681463989.8120291-CDS-Ecto-sp13_S_contig7226:3820..3883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7226 3821..3883 -
1681463989.8234186-CDS-Ecto-sp13_S_contig7226:4272..43241681463989.8234186-CDS-Ecto-sp13_S_contig7226:4272..4324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7226 4273..4324 -
1681463989.8340635-CDS-Ecto-sp13_S_contig7226:5653..58991681463989.8340635-CDS-Ecto-sp13_S_contig7226:5653..5899Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7226 5654..5899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7226.18354.1

>prot_Ecto-sp13_S_contig7226.18354.1 ID=prot_Ecto-sp13_S_contig7226.18354.1|Name=mRNA_Ecto-sp13_S_contig7226.18354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
MAEFAPVFVTVVLGAAVEVTSRVLWAGAKKCTKVAKKGTKFAKQLTYSAR
ENSRKRLTAAGSNRRSREMARISGASDMQQHEVRQFERRGGGSIQPYRSS
HATGQRLAMSGARNNTNHYGGLTTTEHEERVKIRRNGTKVVTRTNRVIRG
RVPGHSRSV*
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mRNA from alignment at Ecto-sp13_S_contig7226:879..6032-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7226.18354.1 ID=mRNA_Ecto-sp13_S_contig7226.18354.1|Name=mRNA_Ecto-sp13_S_contig7226.18354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5154bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7226:879..6032- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCTGCTGTCTCCCTACAATCTACTCTCTCCTGCAGGCTCCCCGCGCAG
TATTCCGCATGCGGTACTCCTGCTGTCTACCCACGATCTACTCTCTCCTT
TTTAGGATCCCCGCGTAGAATACCGCAGCAACCATGGCGGAGTTTGCGCC
TGTGTTCGTAACTGTGGTGTTGGGTGCTGCCGTCGAGGTAACCTCGAGGG
TCTTGTGGGCAGGCGCCAAGAAATGCACGAAGGTCGCCAAGAAAGGGACG
AAGTTCGCGAAACAACTCACCTACAGTGCCCGCGAGAATTCGCGCAAACG
GCTTACGGCAGCAGGCTCGAACAGGCGGTCGCGGGAAATGGCGCGCATCT
CAGGCGCGTCGGACATGCAGCAGCACGAGGTAAGTGCAACCGAGTGTGAT
TATGATGAGCTGATTACTGCCACCGACATGAAGCTGAGGAGGCTGCAAAC
GTATCCACGCGGTAGCAGGAACGGCGCAGCCTTGCTCCCCTTGTCCTACC
AAATACTTATTATTTTATGGGACATGGAGATCCTCGCCACTGAAGAGTTG
ACTCAATATCTATTTCGCCTCAAACCAACCAGCTTGCTCCGCTAAAGGGT
GTGGCTCACAAACCCAGCATATCCGTGACCTACTCCAGCATGAACACAAA
AATCCGTGACGCTATCCCAGCCCACCCGAGACTACGTTCTACACGGCCCA
TTTTGTTGGTTTGTTTGAATACCTACTGGAGTATCTCCACGGAGTCCGTC
TCTATTGTAGACCAACAAATAGTACATCACATGGATAGGGAGGAGGTCTT
TGATTTTCTGGTGGGTCGCGCTCCATATATGTATCGTGCGCCCTCTATTT
TACAATAATAATCACCCCCAAGACTTCAATAACGATGCCGACACCCCACG
CAAGAGGTGTGGGCAGCGTGCTTCATGGTGAACTGACGTATGTGGGGGGG
TGCCGACGCCAAACTGTCTTTCTCTCTCTCCGTCGCACTCGTTCGTTATC
CGCCAAGCAAGACGCAAGCATCTCAGCAAGGTAGCGCACGCACACGTGTG
TGAAACTGTGTACCGCGAAATTGCACAACACTCTCCACAACACAGTCACC
CCACTGTCCATCGAGACGTACATGTAAATATTATAGAGAAGGGGCGATAG
AGAACAGTCTACGACAGAAAGGAACGTAGTGAAGATGGTAACGTACATAC
TTACATTATTATTGAAAAAGGGCCATTTTCGTGTTCTGTCTTCGATTTTA
GAGGGGTCATTGAACGGTGTGCTCATGAAAGGGGAGCCCTCGGCGGGTTA
CTACAAGTACGCGCATGTGGTAAATTCAGTATCCTCGCATAATATCACCC
GGAAAAAATAATATATTGCAGCTGGTTTTAGCGCTACACATTATTTGCGG
CGAACATGTCTCCCGGTATCTTCTGAAGAGTTCTTTAGTCTATGCACTCA
CTCGCAGTTGACCACTTCTCTCTCGGGTCTCGATATGTAGCCAAGGACGC
CACGGTGCCGTAGTAGGTGCGTGTTCGTTGACAATATTCGGGTGACGGCG
AAATTCGCTTTCGAGGGATGCGTGGAAATCAAAACGAACAACCGTAGTTG
CCGTGGTTGGTTGCACGGGAAGGCTATCGCTTGCTTGTTGGAAGTTGTTT
GAACCTGAAGGTTTTTCGTTGCTGCCGTGTTTCTCCTCTGTGTCCGCCGT
ATGTGCAGGTTCGTCAGTTCGAACGCCGTGGGGGCGGCTCCATTCAACCC
TACCGCTCGAGTAAGTGGTGAAGTGCTTTTGGGGGGGGTACAGTAGAAAG
AGAGAAGGGAGAGGGAGAACCCTCAACAGAAGAACCAACGTTTTTTCTTG
AGGGTGCAGGGTGGGCAAATGAAGGGACGGATCGTTCCACATCGTGGTCA
ATAGTGACTTGGCGACTACAATACCAGTAGATGGGTAAGGAGCTGCCATT
CTTGGAAATACGGTAACATCCCTGGGATCAATTGTTGCAAGAGGGAAACA
GCGTACCCTGCATGTGACTGTGGTCAGCTGTCAACACGAGATATGCTGAT
TCTCCGTCCCAGAATTTTGTGTCGAAGTACGAATGCAAGGTCTTTGATCG
AGACGGTACGATGTACTCGTTCAGCGTACTCCCACCGGCACTGCCACAGG
TCATGCCACGGGTCAAAGGTTGGCGATGTCCGGGGCGAGGAACAATACCA
ACCACTATGGAGGTATGGTCCGCCATGTACTTACACAAAACCTCCTTGCC
ATGTGGTTTCATGGTCGATGGTCTCTGGAACTCCCCTGTTTTTGCACTGA
CCTCGATTGTCAAGTGGAACCGATAGGTTCATGGTGTGGCCCATTTTTCT
ACTTGTGAGTTTTTTACGGCACGGATGTCCTTCTGCTACACCTTGTGATC
GTTCGAGTCGCCCGCATCGGTTGGCTCGTCTACTTACGCAATGTAAGGTG
ATGCGCATTTGTCAGAAAGATGGTTCGTGCGGAGACCTAGAAGAAAGAAC
GTGAGAATCTATTGCATCTCCGTAGAGCCCTAGCTGCTCCATGCCAAAGG
GTTGAATCGTTCGCGGTTGCGAACTACGGTGTATCGTCGATGCTAGCTCC
TGTCCAGCAACTGCCCGAACGTACGCGTCGAACGATGAACCACTGATGCC
ATAACAAGCAATGCGCACGCAGTCTACATAGATAGTTTGACATCGGGAGT
ACATGACAAGGCTCTTCTTACCCGCGGGTGGATCCTCTACATGCAGTACT
CCGGACAAATGTGTGTACGGACCTGTCATGTACGCTTCTCTGGCCGTGTG
ATCAGATGAAAACCGCGGTATAGCACTTTTCTCAAGGCTGCACGAGAGGG
CGACACGTAGAACGACTACCCAGGGCGTGTGTCGAACACCACGCGCATGT
TTCTCTTTGCTCCCGCGCTGATTCGTTCTCTAGGCCTCACCACCACGGAA
CACGAAGAACGCGTGAAGATTCGGCGTAATGGCACCAAGGTGGTCACTAG
AACAAACCGGGTGATCAGAGGTAGGGTCCCGGGACACAGCCGATCCGTTT
GAAATTCAGCAAAGCAGTCGGGGTGCGAAAAGTAGCAAGGTGAACATAGA
TTCGGACGGGCGTACCGCAATTTTTGCACCATTGATGAAGGGCGCACAAT
AATAAAAGTTGTTGGACCCACACCATTCCCCTCAGCCGACCCGAAATATG
TGTTCGTTTCAAGTGCATTTTTCGTCTTAACAACAAAGAGTTGTTTCGCC
CTGTCGAGGTCGGTTGAATGGCAAGGCGTTGCCGAAACGATACTCAAAAT
ACGAGCCAGTACCTACAGCCGCAGCGGTGGTTGTACTTCACAGCATGTTA
TGCATAGCCGCAAAAGTTGACAGAAGAGGGGCGTTCACTTGAGCTTGGAG
GCCGTTGTCGCCCCCCTGATCTCGGGCCACGAAAAGTTTCAATATAATTA
TTGCACATTTCGGTAGGCACGAGGTCTAGCCAAGGCTCTAAACCTAATCG
ATTCTCACGTTGTTCATGCTTGGTCTGCGTGCGAACAATCGTCCTGATAA
ATGCTCATTACCTTTCTTGAACAACTACTTATACATCCGTACGATCCAAC
CGGTGCGGGCAACTCACACGGTCCCAAGGAACGGCGGAGAGACACAACAG
CCACCACATTTACTTTATTCCAGGAACATCGTTAGCTTTGATGTTTGCTG
AGCTCGTTGCACGACGTCGAAAACACAAGCACCAAAGGGTCGCGCTAGGT
GTATACTTTCTATCAAGCCCGTGGTGATCTTGACCCGTTCCGAAAAAGGC
CGCAAAAGATGTCAAAAACAAACACGGTTTTTATACGCAGAGAGAGACAG
TCACACACACAATAAACAGACCCCAACATCGGATTTTTGTTTGCCTGTTG
GCAAGGCCTGTTGAAGCCGAAATCAAACCATTAGACTAGTCAGGGCTGAC
TTGTGAGTAGTAGTCTAGCCAGCGCTGACTAGCCTAATGGTTTGACTTCG
GCTTCTATTCAAGTTAGTCGTGGGGTTAGTGAGCCCCGTAACTTTCACTT
CCGAGGAGGGTAACTCCCCGTGCCAGCGCTGCTATTCGTCCAATCTTTTT
TTCGCTTTATACATTGTCACTCGCCACCCACATCCTGCAGAATGTTCCAG
GATCCACTAGTCCTTCCGTCACCCATCCTCCGGCCTAGAGTATCCAGGGT
CTAAGGGACAACAACACTTCAAAGTGTCCAGCCTGGGTCTCCAATCCAAG
ACTGACTCGCACACAAACAGTATTCCTGGACTCACACTCCCATTTCTTAT
CCATTTTGAGTCGGGGAGGTGCAATTCGCTGTGACATGGAATTTAGGTCG
AACTGTATCACCGTATGCATAATGGTTGTATTTCGCAAGAAATCTCTGGT
ATGCCTGAACTAAAACCCTGCGTCGAAACATGGACTATTCTCCTTTTTCG
GTGTTGTATGGGTTTTAAACGGCACACAAGCCTACCACGATACACTACTT
CTACCCCACTCCACCCCAACGCATTCACTACGCAGAAACGAGGTCCCGCA
GGGCAGCCCTCCTCAAGACGCCGGGAGGGGGGAGTATATTCTTAGAAGTA
CAGATTAGGGTTTAGTGCCTGTCAAAGCCGAAAAACTTCACTGATGCGAA
CGAGGTTGTTGGCGACCACCCCGAGCTTGTGTCTCACACTGCTGTTTGTT
CCGCGCATTTAGTTCTTGCGCTCGTACTGATTGTGCCTGCCTGTAGGTGA
TACAACCACGGAATACGAGGAGTCGGCGGAGGTTCGGCGGAATGGCACCA
AGGTGTACAAAAGAACCAACAGGGAGATCACAGGTATGTTTCCAGCAGGC
ATGTTTGAATTTCCGCAACGCAGTCGGCGTGCGAATTCACTTCGTTGTTA
CCAGTATTGCATAACGAAAGGAGAACACTATCGATGAAGCGCATCTACAA
CGGGCGATAAAACGTCTGGGCATTTCCATCGCGATAGAAACTGACGTTTC
GCCAATAAGTCCACGCACATCCCCGTTCTGCGTCCCGTTCGTGGCTGCGT
TGTTGCAGGAAGACGTTGATGGATGGTGGGTACGACGGAGGCAGCATCCT
TTCGGCGGTGGGGCATCAACCAGACTTTCAACAAAGGCAGCATCGACTTC
AGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7226:879..6032-

>mRNA_Ecto-sp13_S_contig7226.18354.1 ID=mRNA_Ecto-sp13_S_contig7226.18354.1|Name=mRNA_Ecto-sp13_S_contig7226.18354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7226:879..6032- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAGTTTGCGCCTGTGTTCGTAACTGTGGTGTTGGGTGCTGCCGT
CGAGGTAACCTCGAGGGTCTTGTGGGCAGGCGCCAAGAAATGCACGAAGG
TCGCCAAGAAAGGGACGAAGTTCGCGAAACAACTCACCTACAGTGCCCGC
GAGAATTCGCGCAAACGGCTTACGGCAGCAGGCTCGAACAGGCGGTCGCG
GGAAATGGCGCGCATCTCAGGCGCGTCGGACATGCAGCAGCACGAGGTTC
GTCAGTTCGAACGCCGTGGGGGCGGCTCCATTCAACCCTACCGCTCGAGT
CATGCCACGGGTCAAAGGTTGGCGATGTCCGGGGCGAGGAACAATACCAA
CCACTATGGAGGCCTCACCACCACGGAACACGAAGAACGCGTGAAGATTC
GGCGTAATGGCACCAAGGTGGTCACTAGAACAAACCGGGTGATCAGAGGT
AGGGTCCCGGGACACAGCCGATCCGTTTGA
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