mRNA_Ecto-sp13_S_contig12180.1835.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12180.1835.1
Unique NamemRNA_Ecto-sp13_S_contig12180.1835.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12180.1835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12180contigEcto-sp13_S_contig12180:3808..4316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size126
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462647.0533838-UTR-Ecto-sp13_S_contig12180:3807..38131681462647.0533838-UTR-Ecto-sp13_S_contig12180:3807..3813Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12180 3808..3813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462647.0696816-CDS-Ecto-sp13_S_contig12180:3813..38711681462647.0696816-CDS-Ecto-sp13_S_contig12180:3813..3871Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12180 3814..3871 +
1681462647.0799692-CDS-Ecto-sp13_S_contig12180:4248..43161681462647.0799692-CDS-Ecto-sp13_S_contig12180:4248..4316Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12180 4249..4316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12180.1835.1prot_Ecto-sp13_S_contig12180.1835.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12180 3814..4316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12180.1835.1

>prot_Ecto-sp13_S_contig12180.1835.1 ID=prot_Ecto-sp13_S_contig12180.1835.1|Name=mRNA_Ecto-sp13_S_contig12180.1835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
MNAWTPPTSTDVRLLLPEFYVDFDDLASCLEAAGPQTITTL*
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mRNA from alignment at Ecto-sp13_S_contig12180:3808..4316+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12180.1835.1 ID=mRNA_Ecto-sp13_S_contig12180.1835.1|Name=mRNA_Ecto-sp13_S_contig12180.1835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=509bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12180:3808..4316+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTAATGAATGCCTGGACTCCACCGACGTCGACAGATGTCAGACTGCT
TCTACCGGAATTTTGTGAGCCGCCACCGAATTGTATGGTACTGCTACGCA
AGACCCCAAACGTGTTTAATGGTGGCTGACAAGGCAACCGTTGATGCCCG
GCGTGGCTCGTTGCAGACCGATTGAGTTACCTTGCAGGGTGGGGTTTTGC
AATTTCCTCGTTAATGCTCGCTCCAAGATCGGCGGTGTTTATACCTACAA
CCTCCGGTACCCGTTGGTCGGGACACGTTGAGCAGAATGTTGAGTTCAGG
GCGTTTGGGAGGGAATTCATTCACGTTTATTCGGGCGCACACTGTGGAAC
AATGCCGCCGCACCACCAACAGAGCAAGACTTGACGCGCCGTTGATGTGC
GCTATGTTATCCCAGAGGTCTTAGTTCGTGCGGCATAACAGATGTCGATT
TCGACGACCTCGCGTCATGCTTGGAAGCTGCCGGACCACAAACAATCACA
ACCCTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12180:3808..4316+

>mRNA_Ecto-sp13_S_contig12180.1835.1 ID=mRNA_Ecto-sp13_S_contig12180.1835.1|Name=mRNA_Ecto-sp13_S_contig12180.1835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12180:3808..4316+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGCCTGGACTCCACCGACGTCGACAGATGTCAGACTGCTTCTACC
GGAATTTTATGTCGATTTCGACGACCTCGCGTCATGCTTGGAAGCTGCCG
GACCACAAACAATCACAACCCTGTGA
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