mRNA_Ecto-sp13_S_contig12178.1833.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12178.1833.1
Unique NamemRNA_Ecto-sp13_S_contig12178.1833.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12178.1833.1 vs. uniprot
Match: D8LTB7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTB7_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 6.970e-55
Identity = 118/128 (92.19%), Postives = 118/128 (92.19%), Query Frame = 1 
Query:   16 ATIARAVEAALPDGMTATDEMVEAINKSCAAEFVNLLSTEASAKAKDSGKNPVMSNEDVVEAIKRLGLEAYLTGAEEGAAADTEKEQXXXXXXXXXXXXXEAEEAAANRQRELLEATAKSFYEDQGLA 399
            ATIARAVEAALPDGMTATDEMVEAINKSC AEFVNLLSTEASAKAK SGKNPVMSNEDVVEAIKRLGLEAYLTGAEEGAAADTEK  XXXXXXXXXXXXX      ANRQRELLEATAKSFYEDQGLA
Sbjct:    6 ATIARAVEAALPDGMTATDEMVEAINKSC-AEFVNLLSTEASAKAKCSGKNPVMSNEDVVEAIKRLGLEAYLTGAEEGAAADTEKXXXXXXXXXXXXXXXXXXXXXANRQRELLEATAKSFYEDQGLA 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12178.1833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTB7_ECTSI6.970e-5592.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12178contigEcto-sp13_S_contig12178:869..2818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size565
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHistone-fold
Ec32 orthologEc-12_005970.1
Cds size345
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12178.1833.1prot_Ecto-sp13_S_contig12178.1833.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12178 926..2655 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462646.8754585-UTR-Ecto-sp13_S_contig12178:868..9251681462646.8754585-UTR-Ecto-sp13_S_contig12178:868..925Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12178 869..925 +
1681462646.92448-UTR-Ecto-sp13_S_contig12178:2655..28181681462646.92448-UTR-Ecto-sp13_S_contig12178:2655..2818Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12178 2656..2818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462646.88504-CDS-Ecto-sp13_S_contig12178:925..9741681462646.88504-CDS-Ecto-sp13_S_contig12178:925..974Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12178 926..974 +
1681462646.8950915-CDS-Ecto-sp13_S_contig12178:1423..15241681462646.8950915-CDS-Ecto-sp13_S_contig12178:1423..1524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12178 1424..1524 +
1681462646.9046881-CDS-Ecto-sp13_S_contig12178:1836..19171681462646.9046881-CDS-Ecto-sp13_S_contig12178:1836..1917Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12178 1837..1917 +
1681462646.914418-CDS-Ecto-sp13_S_contig12178:2541..26551681462646.914418-CDS-Ecto-sp13_S_contig12178:2541..2655Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12178 2542..2655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12178.1833.1

>prot_Ecto-sp13_S_contig12178.1833.1 ID=prot_Ecto-sp13_S_contig12178.1833.1|Name=mRNA_Ecto-sp13_S_contig12178.1833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MTATDEMVEAINKSCAAEFVNLLSTEASAKAKDSGKNPVMSNEDVVEAIK
RLGLEAYLTGAEEGAAADTEKEQARRKRKRKPKQSKEAEEAAANRQRELL
EATAKSFYEDQGLA*
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mRNA from alignment at Ecto-sp13_S_contig12178:869..2818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12178.1833.1 ID=mRNA_Ecto-sp13_S_contig12178.1833.1|Name=mRNA_Ecto-sp13_S_contig12178.1833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1950bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12178:869..2818+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTTGAACGAAACAGCCACGATTGCTCGTGCCGTGGAAGCTGCTCTTCC
AGATGGCATGACCGCCACTGACGAGATGGTGGAAGCGATCAACAAGAGTT
GTGCAGGTGAAGCGTCCCTCTTCATGTCGACATGACGCTAGAGCACAACC
GGCACGCCCTGTCGTATGGAATGTGACGTGTCTGTGCCATTGTTGGCGTA
CGACATTGTCGCATGGCCGTACATTATGTGACAATCGTAGCCAGTTGCCC
TTTGGTTGTTGCGCGGTGCTCCATGTCTCGGGCATTCGCTTTGGCCTTCA
TAGCGAGCCGATCGCATAGAGATGTCGTTCTCGTGCTCAAAGATGAGTTG
CCAGCATGGCAAGAGCTTGGAAATCCTTCACCATACTGCCATGCGCGTGC
GGTATCATGCATGAGCATGGAGGTCGGATGTTGATGATCCTTTGCTCTTG
TCATGCCGTGACAGCAGCTGCTACCGCCGCCGCTACCTCTGCTGCCCTCC
TATTGCTGGTTCAAGCCCAACCACATAATCGTTTTATCCGTGCCTGTGAC
GTGAGCAGAGTTTGTGAATCTGCTCTCCACCGAGGCGTCGGCCAAGGCGA
AAGATTCAGGGAAGAATCCGGTCATGTCGAACGAAGACGTCGTGGAGGCC
ATCAAGGTGTGCTATCCGCTTGTGGACAGAGAGGCACGCTCGGGTGTCGA
CCCCAGCCACGCCATTGAAAGAGCCCCTACATACCATCAACGCGCAATGG
CGAGGAATGTTTTGTCGTTAATTGGTGTCCTCTCACCCCACGAGCGCGCT
AAATACTCGTTTTCGCAACCGTGTGTTCCACAATTGGTGTGAGCGAGAAA
CTACACTTGATTCTTTTCTGCGTGCTCGTTCTATTCTGCCGCGACGGTGT
ACCTGGCGCCGTCGCCGCCCCCTGCTATACTTAATCCACATGTGCCGCGC
CTGCCTGAACTCCGGCAGAGGCTTGGGCTTGAGGCCTACCTTACGGGCGC
GGAGGAAGGGGCGGCAGCGGACACCGAAAAGGAACAAGCGAGAAGAAAGG
TGACGACGTGGGTCAACATATTCCTGTTCTCCGGTAAAAAGACACGTACG
GCCGGTACGATCCACAAAGGATCAACAACGTGCCTGCATGCACAGCAGTG
CTAGGTGATAGGGTTGACCATCAGCTCTTCGTCAGCGCAAGCCCTGAATC
GGTGGGTAGCTGCTTACCAATCGTGAAGGATGCGAATTATTCCGATGTGC
TCTGTCCGTGTTACGGCATGCAACGCCTAAGGTGTAGTTCAATTCCACCG
GTGGTGTGCCTCTATCGTGATCGATTGGACGTCTGTCATCGTCACACTCG
AGGTACAAGCCCCTCGTTGGTTGTGACATTTGGCAACTCCTAAGGGAACA
TGTTTTCCGGTCCGCACGGGACGCGGGGGTCTTCCTTTGTATGCGGGCGG
ACGCCTTCAGCGAAACCGCTGTGGACACAGATTGTTTGTTGTGTGTTGCT
GGCATTCGTTTGCTTCTCGCACAGTCTTGTTGCTTCTGCTGCGATTGTTG
ACATGCACACGGCAACCCGTTTGCCGCTGTTGCACCGTGTCCTGTCGGAA
ATTTGTTCGATGTTCTCGGCTCCGATCGTAGCCACCCCCGGACCCACCCC
CCTCCCCCGTGCGCGCATGTCAGAGGAAGAGAAAGCCAAAGCAATCCAAA
GAGGCGGAAGAGGCCGCGGCGAACAGGCAGCGCGAGCTGCTGGAAGCCAC
GGCGAAGAGCTTCTACGAAGACCAAGGGCTGGCGTAAGCACTACTTCTGC
GACCATCCTCACCTTGCGGCTGCTCTCCGACTTCCCTCGAATGGAGTTGG
GAACAAAAAACGGAGAGTCGCGACGATTCCCCCAGACGGAGAACACGTTT
TGTTGCTTGAGCGTGCCGAGTTGCGTTCTCCAGTTGAAGGGGGTGAGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12178:869..2818+

>mRNA_Ecto-sp13_S_contig12178.1833.1 ID=mRNA_Ecto-sp13_S_contig12178.1833.1|Name=mRNA_Ecto-sp13_S_contig12178.1833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12178:869..2818+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGCCACTGACGAGATGGTGGAAGCGATCAACAAGAGTTGTGCAGC
AGAGTTTGTGAATCTGCTCTCCACCGAGGCGTCGGCCAAGGCGAAAGATT
CAGGGAAGAATCCGGTCATGTCGAACGAAGACGTCGTGGAGGCCATCAAG
AGGCTTGGGCTTGAGGCCTACCTTACGGGCGCGGAGGAAGGGGCGGCAGC
GGACACCGAAAAGGAACAAGCGAGAAGAAAGAGGAAGAGAAAGCCAAAGC
AATCCAAAGAGGCGGAAGAGGCCGCGGCGAACAGGCAGCGCGAGCTGCTG
GAAGCCACGGCGAAGAGCTTCTACGAAGACCAAGGGCTGGCGTAA
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