mRNA_Ecto-sp13_S_contig7206.18329.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7206.18329.1
Unique NamemRNA_Ecto-sp13_S_contig7206.18329.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7206.18329.1 vs. uniprot
Match: D7G1A8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1A8_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 1.860e-111
Identity = 190/195 (97.44%), Postives = 190/195 (97.44%), Query Frame = 1 
Query:    1 MASEEKSAAGISSLFAKKKGKKGKKTKGSNLNLDSGIPKIEEKPKIEKLQEILGGPDPAEDDGWDDVVEKKSVVATGGKHVSDLIDMTALMTEDESTAAKLEKQDIKQAFHDARTVKETEKKEXXXXXXXXXXXTATKPKGLSGDIFGGGAARSGGGLGGGWKQRMEERELKQRQEALSVNNTSAFPSLKDAMSA 585
            MASEE SAAGISSLFAKKKGKKGKKTKGSNLNLDSGIPK EEKPKIEKLQEILGGP PAEDDGWDDVVEKKSVVATGGKHVSDLIDMTALMTEDESTAAKLEKQDIKQAFHDARTVKE EKKEXXXXXXXXXXXTATKPKGLSGDIFGGGAARS GGLGGGWKQRMEERELKQRQEALSVNNTSAFPSLKDAMSA
Sbjct:    1 MASEETSAAGISSLFAKKKGKKGKKTKGSNLNLDSGIPKTEEKPKIEKLQEILGGPGPAEDDGWDDVVEKKSVVATGGKHVSDLIDMTALMTEDESTAAKLEKQDIKQAFHDARTVKEAEKKEXXXXXXXXXXXTATKPKGLSGDIFGGGAARSAGGLGGGWKQRMEERELKQRQEALSVNNTSAFPSLKDAMSA 195
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7206.18329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1A8_ECTSI1.860e-11197.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7206contigEcto-sp13_S_contig7206:2775..5857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size588
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_005190.1
Cds size588
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463987.2408705-CDS-Ecto-sp13_S_contig7206:2774..30421681463987.2408705-CDS-Ecto-sp13_S_contig7206:2774..3042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7206 2775..3042 -
1681463987.252698-CDS-Ecto-sp13_S_contig7206:4360..44261681463987.252698-CDS-Ecto-sp13_S_contig7206:4360..4426Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7206 4361..4426 -
1681463987.2689526-CDS-Ecto-sp13_S_contig7206:4715..48471681463987.2689526-CDS-Ecto-sp13_S_contig7206:4715..4847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7206 4716..4847 -
1681463987.278193-CDS-Ecto-sp13_S_contig7206:5735..58571681463987.278193-CDS-Ecto-sp13_S_contig7206:5735..5857Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7206 5736..5857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7206.18329.1prot_Ecto-sp13_S_contig7206.18329.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7206 2775..5857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7206.18329.1

>prot_Ecto-sp13_S_contig7206.18329.1 ID=prot_Ecto-sp13_S_contig7206.18329.1|Name=mRNA_Ecto-sp13_S_contig7206.18329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=196bp
MASEEKSAAGISSLFAKKKGKKGKKTKGSNLNLDSGIPKIEEKPKIEKLQ
EILGGPDPAEDDGWDDVVEKKSVVATGGKHVSDLIDMTALMTEDESTAAK
LEKQDIKQAFHDARTVKETEKKEEPQQEETKEEETATKPKGLSGDIFGGG
AARSGGGLGGGWKQRMEERELKQRQEALSVNNTSAFPSLKDAMSA*
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mRNA from alignment at Ecto-sp13_S_contig7206:2775..5857-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7206.18329.1 ID=mRNA_Ecto-sp13_S_contig7206.18329.1|Name=mRNA_Ecto-sp13_S_contig7206.18329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3083bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7206:2775..5857- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCCGAGGAAAAATCTGCTGCGGGTATTTCCTCGCTGTTCGCGAA
GAAAAAGGGAAAGAAGGGCAAGAAAACCAAGGGGTCCAATCTCAACCTCG
ACTCGGGCATCCCCAAAATAGAGTGAGCCTCAAAGTCTACACACACTTGC
GCGCTTCCTTGCATTCCAGTAGAGTAGCGTTGAGAGTAGTGAAGGTGCGT
AGAACGAAACGCGTTTGTGTGAGTCGACAAAGCCTTTAGACTTCATTCTA
ATGGATGGCTCTTGGCTGCTTTGTTGTGGGTTGAACATTCTCGCCAAGTT
GCTGTTCCCCTCGCACCGCTACCGCAGAAATCCAGTGAGCACGGGATGCG
AGGTGGGGCGCTCTGCTGTCTCTCTCTCTGTGCAATGTGCACACTCCTCC
TACCAGTGCCAAGGTGTTTTTGGTTCAACCGCTCGAACAAGACCGTCTGC
CGTCCTTTCATCCACAGCAGTATTTTGACCAAACGTATGCATACGCATCT
GCTGTGTAGGATGGATGTAGTTCGAGTAGTTCCGTCAAGGCAAGTTATAC
AAACCGAGAGGAAAAACGAACGTAGAGACATGGTGCGTGAAAAGTGCGTA
CAACAGCAGGCACTTCCCGCCCGCTTCTGCCAACGCTCAGAACGTAACAG
GATTTTTGCTTGCATATTCAGAGCTTGCAATCAGGGTGCTGCGGGTTGGC
TAGCTTGCAATTGCCACTCGCCTGCGAAATGGCGATGTGACAACGCGAAC
ATTGGCTTTAGTAGATACACGCAAAGTACTCCGAAGTAACCCAACACAAC
AGCCTCTGAATCAATTCACCAAATACGTCAGCTTTTCATAGCAGCAGTCA
AAGATTTTCTACGCCCTGGGTGCCACTTGCATAAGAAAGGCTCGGCAGGC
AGGCACCCTCTATGCGGCAATCAGAAAGTGCGCACCCCCCTTGTAGATTC
AACGCCCCCCCCCCCCCCTCCCTATTCCCTATGCCCATGCCCTAACGAAA
CGTTTGTCAGGGAGAAGCCCAAGATAGAGAAGCTCCAGGAGATCCTGGGT
GGCCCTGACCCGGCGGAAGACGACGGCTGGGACGATGTCGTAGAGAAGAA
GAGCGTCGTGGCGACGGGAGGGAAGCACGTGTCAGACCTCATGTGAGTCT
TGTAGAGTTGATGCATGCGACGTGATTTTTTTTGTGATTTTGGGGTTACA
TCGTCGTTTGACAGAGTTGATGAAGATAATGAAATGCCCCCCCCCCCCTC
CGCACTTTAGAAAGGCGTCTTCGTGTGTAGTGCACATCTCTTTGCTCTTT
GCTTGCTGATGCGCGTCGCTCACTCTGCCTGCCCCTTTTGGTGGCCGTTT
CTCCCTCTCTCGTCTGTGGAATAAATCATGGGGCGATTTTGGATGCTGTG
CCTACACGGCAAACCGGCGCGCGGTCATCAGTGATATGACGGCTCTCATG
ACCGAGGATGAGTCGACGGCCGCCAAGCTGGAGAAACAAGACATCAAGTG
AGTCGATTGAACGAAAACAATCTGACCACCGCGTGCGCGCACGTGCATGC
GGATCCGCACAGGCGAGATGTAAGTTGCGAGCGAAGATGGTAGGAAAAAA
AAAGGCAAAGCGATCAAGGAGGCTCCTCGTCCCAAGGTTGTATATCGTGA
TCGATACGTTTTGTCGTAGATCTCGCCTGAAAAGGGTGAGCAGGGGCGAC
TATACTCGAGGAGGAGAAAGAAAGACGAAATTGAGAACCTCCAGCCTGAG
GTTCCAAGACCAGACTCAATCTGTGGAAGCAAAGACATCAAAGTGAACGT
CAAGCAGTCTGTATTCTCAAGGAGAGTTACGTGTACACGTGGCTACCTGT
GTGATGTCACGAGACAGTAATGTGCCACAGCCACGGCCCTGATTCTGTCG
CATTTTCATGGTGTGGGTTGGTCGACAGGCGCCATGATACTGGAGAGTGC
TGCCGTCCCCTTTTTTGTGTATGTGCGGTACGCTCGAGGCACGTTTGATA
CAATCACGATGTAAAGTCTATTCCGTTTTGGATGTTTCCTCGTCCCGTTA
GCCTGATACCCACCGGTACTTTGTCCGTTCATTGTCGCGAGATGTAAAGT
TCCTCTTCATCGCACTCACTCTGATTCCCGCCGCGAAATGGCATCGCGCA
CAGGCTCGTGTACGTAGGATAGCTCAGAACCATCATTGTTTCGACGGTGT
TCGATGAGATGAGCGCCGTTGTGAAGTATCTTGTTTGCTGCTCCTCTCCG
CTCAACAATGCTCCGAAATGCCAAACCCCCGTATTGCAGCACATTAGCGA
GAAAGAGTTTAACGATACCTGTACTCATCGCTCCGTTTGTTTGCCTTTAC
TAGACCCATCAAAACTATTCAGCACCCCAGCAGTGTAGAAATTGGGACAG
ACCAAAGTAAGAGTTTTAACAATTTCAAATCAAGCCGATCTTTCTTTTCC
ACTTCCCCGTCACCGCCCCCCGCCCCCCCCATTCACTCAGCTGGAAAAAT
GTACAAAGAAGGTACTAAGGAGATGTTTGAGGCATAGAATAGAGAGAAGA
CGGCAGCGGTACTGGGGAATAGGACGTGGTTTGAACAGGCGGGAAGTGAT
ATCGGTAGAAGTAATATCGTTAGGATAGATAGACTAGGGAAGACATTTAT
GAGCCACCATTGCCAAGTAGGAAGGAACGATTGGCCGTCGGTGAGCGGTC
CTGTGGGAACAATGCGCCGTCCTCTCGAGGACGCAAGGTCAATGGTCTAA
CCGCTATGGCTTGCAAAACATAACAGTATCCCCCCCCCCCCATTTACCGT
ACCCCCCTCCGAAAGGCAAGCTTTCCACGATGCAAGAACTGTCAAAGAGA
CGGAGAAGAAGGAAGAGCCACAACAGGAGGAGACGAAAGAGGAGGAGACT
GCCACTAAGCCTAAGGGGCTGTCGGGCGACATTTTCGGGGGTGGGGCGGC
GCGTAGCGGCGGTGGGCTCGGGGGGGGTTGGAAGCAGCGCATGGAGGAGC
GCGAGTTGAAGCAGCGACAGGAGGCGCTCAGCGTGAACAACACCTCTGCC
TTCCCGTCTCTCAAGGACGCCATGAGCGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7206:2775..5857-

>mRNA_Ecto-sp13_S_contig7206.18329.1 ID=mRNA_Ecto-sp13_S_contig7206.18329.1|Name=mRNA_Ecto-sp13_S_contig7206.18329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7206:2775..5857- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCCGAGGAAAAATCTGCTGCGGGTATTTCCTCGCTGTTCGCGAA
GAAAAAGGGAAAGAAGGGCAAGAAAACCAAGGGGTCCAATCTCAACCTCG
ACTCGGGCATCCCCAAAATAGAGGAGAAGCCCAAGATAGAGAAGCTCCAG
GAGATCCTGGGTGGCCCTGACCCGGCGGAAGACGACGGCTGGGACGATGT
CGTAGAGAAGAAGAGCGTCGTGGCGACGGGAGGGAAGCACGTGTCAGACC
TCATTGATATGACGGCTCTCATGACCGAGGATGAGTCGACGGCCGCCAAG
CTGGAGAAACAAGACATCAAGCAAGCTTTCCACGATGCAAGAACTGTCAA
AGAGACGGAGAAGAAGGAAGAGCCACAACAGGAGGAGACGAAAGAGGAGG
AGACTGCCACTAAGCCTAAGGGGCTGTCGGGCGACATTTTCGGGGGTGGG
GCGGCGCGTAGCGGCGGTGGGCTCGGGGGGGGTTGGAAGCAGCGCATGGA
GGAGCGCGAGTTGAAGCAGCGACAGGAGGCGCTCAGCGTGAACAACACCT
CTGCCTTCCCGTCTCTCAAGGACGCCATGAGCGCGTAA
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