mRNA_Ecto-sp13_S_contig72020.18325.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72020.18325.1
Unique NamemRNA_Ecto-sp13_S_contig72020.18325.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig72020.18325.1 vs. uniprot
Match: D7G5U6_ECTSI (FGGY_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U6_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.870e-30
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1
Query:    1 RVLATGGGSNNAEILQVLADVFQAPVFTAAASDSAAVGAALRAKHGVEGLRRGVPYVPFAEVYG 192
            RVLATGGGSNNAE+LQVLADVFQAPVFTAAASDSAAVGAALRAKHGVEGLRRGVPYVPFAEVYG
Sbjct:  493 RVLATGGGSNNAELLQVLADVFQAPVFTAAASDSAAVGAALRAKHGVEGLRRGVPYVPFAEVYG 556          
BLAST of mRNA_Ecto-sp13_S_contig72020.18325.1 vs. uniprot
Match: A0A401Q572_SCYTO (FGGY_C domain-containing protein n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401Q572_SCYTO)

HSP 1 Score: 62.0 bits (149), Expect = 4.220e-11
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    1 RVLATGGGSNNAEILQVLADVFQAPVFTAAASDSAAVGAALRAKHGVEGL 150
            RVLATGG S+N++ILQVLADVF APV+T   ++SA +G A RAKHG++ +
Sbjct:    6 RVLATGGASSNSDILQVLADVFNAPVYTRDTTNSACLGCAYRAKHGLQAV 55          
BLAST of mRNA_Ecto-sp13_S_contig72020.18325.1 vs. uniprot
Match: UPI0011B4AB32 (xylulose kinase n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B4AB32)

HSP 1 Score: 65.9 bits (159), Expect = 5.190e-11
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 RVLATGGGSNNAEILQVLADVFQAPVFTAAASDSAAVGAALRAKHGVEGLRRGVPY 168
            RVLATGG S+N +ILQVL+DVF APV+T   ++SA +G+A RA HG+E +  GVP+
Sbjct:  434 RVLATGGASSNKDILQVLSDVFDAPVYTKDVANSACLGSAYRALHGLESVESGVPF 489          
BLAST of mRNA_Ecto-sp13_S_contig72020.18325.1 vs. uniprot
Match: H2YXB8_CIOSA (Xylulose kinase n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YXB8_CIOSA)

HSP 1 Score: 64.7 bits (156), Expect = 1.320e-10
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1
Query:    1 RVLATGGGSNNAEILQVLADVFQAPVFTAAASDSAAVGAALRAKHGVE 144
            RVLATGG S+N EILQVL+DVFQAPV+T   S+SA +G A RAKHGV+
Sbjct:  430 RVLATGGASSNKEILQVLSDVFQAPVYTLDTSNSACLGCAYRAKHGVK 477          
BLAST of mRNA_Ecto-sp13_S_contig72020.18325.1 vs. uniprot
Match: H9FDA2_MACMU (Xylulose kinase (Fragment) n=1 Tax=Macaca mulatta TaxID=9544 RepID=H9FDA2_MACMU)

HSP 1 Score: 62.8 bits (151), Expect = 1.480e-10
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 RVLATGGGSNNAEILQVLADVFQAPVFTAAASDSAAVGAALRAKHGVEGLRRGVPYVPFAEV 186
            ++LATGG S+N +ILQVLADVF APV+    ++SA VG+A RA HG+EG R     VPF+EV
Sbjct:   98 KILATGGASHNRDILQVLADVFGAPVYVIDTANSACVGSAYRAFHGLEGGRD----VPFSEV 155          
BLAST of mRNA_Ecto-sp13_S_contig72020.18325.1 vs. uniprot
Match: A0A3B3RE25_9TELE (Xylulose kinase n=3 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RE25_9TELE)

HSP 1 Score: 64.3 bits (155), Expect = 1.810e-10
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 RVLATGGGSNNAEILQVLADVFQAPVFTAAASDSAAVGAALRAKHGVEGLRRGVPY 168
            +VLATGG S+N++I+QVLADVF APV+T   ++SA +G+A RAKHGVE  +RGV +
Sbjct:  434 KVLATGGASSNSDIVQVLADVFNAPVYTIDTANSACLGSAYRAKHGVE-AKRGVSF 488          
BLAST of mRNA_Ecto-sp13_S_contig72020.18325.1 vs. uniprot
Match: A0A210QRP6_MIZYE (Xylulose kinase n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210QRP6_MIZYE)

HSP 1 Score: 63.5 bits (153), Expect = 3.380e-10
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 RVLATGGGSNNAEILQVLADVFQAPVFTAAASDSAAVGAALRAKHGVEGLR 153
            RVLATGG S+N EILQVL+DVF APV+     +SAA+G   RAKHGV GL+
Sbjct:  435 RVLATGGASSNKEILQVLSDVFNAPVYVTEVPNSAALGGCYRAKHGVTGLK 485          
BLAST of mRNA_Ecto-sp13_S_contig72020.18325.1 vs. uniprot
Match: A0A836CEA2_9STRA (Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEA2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.700e-10
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 RVLATGGGSNNAEILQVLADVFQAPVFTAAASDSAAVGAALRAKHGVEGLRRGVPYVPFAEVYG 192
            RVLA GG S +A ++QVLADVF +PV+  A  D+A VGAALRAKHGV   R G   +PF+ + G
Sbjct:  423 RVLAMGGASASAAMMQVLADVFASPVYVGAVPDAAVVGAALRAKHGVLSQRAG-RLLPFSSILG 485          
BLAST of mRNA_Ecto-sp13_S_contig72020.18325.1 vs. uniprot
Match: A0A813D3V9_9DINO (Xylb protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813D3V9_9DINO)

HSP 1 Score: 62.4 bits (150), Expect = 4.880e-10
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 RVLATGGGSNNAEILQVLADVFQAPVFTAAASDSAAVGAALRAKHGVEGLRRGVPYVPFAE 183
            R++ATGG S+N  ILQVLADVF  PVFT   SDSA++GAALRA HG+  L     ++ FA+
Sbjct:  140 RIIATGGASSNKAILQVLADVFGVPVFTLDQSDSASLGAALRAGHGLRCLSSEGGFLSFAK 200          
BLAST of mRNA_Ecto-sp13_S_contig72020.18325.1 vs. uniprot
Match: A0A6F9DXR7_9ASCI (Xylulose kinase n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DXR7_9ASCI)

HSP 1 Score: 62.8 bits (151), Expect = 6.310e-10
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    1 RVLATGGGSNNAEILQVLADVFQAPVFTAAASDSAAVGAALRAKHGVEG 147
            RVLATGG S N EILQVL+DVFQAPV+    S+SA +G A RAKHG++G
Sbjct:  429 RVLATGGASKNPEILQVLSDVFQAPVYILDTSNSACLGCAYRAKHGLKG 477          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72020.18325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5U6_ECTSI1.870e-3098.44FGGY_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A401Q572_SCYTO4.220e-1162.00FGGY_C domain-containing protein n=1 Tax=Scyliorhi... [more]
UPI0011B4AB325.190e-1158.93xylulose kinase n=1 Tax=Gadus morhua TaxID=8049 Re... [more]
H2YXB8_CIOSA1.320e-1070.83Xylulose kinase n=1 Tax=Ciona savignyi TaxID=51511... [more]
H9FDA2_MACMU1.480e-1058.06Xylulose kinase (Fragment) n=1 Tax=Macaca mulatta ... [more]
A0A3B3RE25_9TELE1.810e-1060.71Xylulose kinase n=3 Tax=Paramormyrops kingsleyae T... [more]
A0A210QRP6_MIZYE3.380e-1064.71Xylulose kinase n=2 Tax=Pectinidae TaxID=6566 RepI... [more]
A0A836CEA2_9STRA4.700e-1056.25Phosphoribosylformylglycinamidine cyclo-ligase n=1... [more]
A0A813D3V9_9DINO4.880e-1057.38Xylb protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A6F9DXR7_9ASCI6.310e-1067.35Xylulose kinase n=1 Tax=Phallusia mammillata TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72020contigEcto-sp13_S_contig72020:21..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score122.1
Seed ortholog evalue9.6e-26
Seed eggNOG ortholog2880.D7G5U6
Preferred nameXYLB
Model size195
KEGG rclassRC00002,RC00538
KEGG koko:K00854,ko:K14288,ko:K16732
KEGG ReactionR01639
KEGG Pathwayko00040,ko01100,ko03013,map00040,map01100,map03013
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004856,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0005997,GO:0005998,GO:0006063,GO:0006064,GO:0006082,GO:0006091,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009987,GO:0016052,GO:0016054,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019321,GO:0019323,GO:0019585,GO:0019637,GO:0019640,GO:0019752,GO:0031982,GO:0032787,GO:0043226,GO:0043227,GO:0043230,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044281,GO:0044282,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046395,GO:0046835,GO:0051167,GO:0070062,GO:0071704,GO:0072329,GO:0090407,GO:1901135,GO:1901137,GO:1901159,GO:1901575,GO:1901576,GO:1903561
Exons2
EggNOG free text desc.xylulokinase activity
EggNOG OGsCOG1070@1,KOG2531@2759
EC2.7.1.17
Cds size195
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463986.9834871-CDS-Ecto-sp13_S_contig72020:20..591681463986.9834871-CDS-Ecto-sp13_S_contig72020:20..59Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72020 21..59 +
1681463987.006454-CDS-Ecto-sp13_S_contig72020:381..5371681463987.006454-CDS-Ecto-sp13_S_contig72020:381..537Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72020 382..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72020.18325.1prot_Ecto-sp13_S_contig72020.18325.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72020 21..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72020.18325.1

>prot_Ecto-sp13_S_contig72020.18325.1 ID=prot_Ecto-sp13_S_contig72020.18325.1|Name=mRNA_Ecto-sp13_S_contig72020.18325.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
RVLATGGGSNNAEILQVLADVFQAPVFTAAASDSAAVGAALRAKHGVEGL
RRGVPYVPFAEVYG*
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mRNA from alignment at Ecto-sp13_S_contig72020:21..537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72020.18325.1 ID=mRNA_Ecto-sp13_S_contig72020.18325.1|Name=mRNA_Ecto-sp13_S_contig72020.18325.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=517bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72020:21..537+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGTGCTCGCCACCGGCGGGGGCTCCAACAACGCCGAGGTATGCATAGT GTGTATATTTTTTGTTAGTATCAACCGCGCTACCCGACTGACGAATGAAA AGACGTCAGTCTTACAACCGGAATAGAAAAACGCGAACATGCCGTGTGTG ACTGCGTTTCAGTCAGAAAAAATGTTGAGGTAGTGTTTACGACTGCATTT CTGTCACGTCACATCGCAATAAACCCTCAAGTTCTTATTGCTGGCGAGAC CGAGACCCCAATTTGCATTTGTGGGACACTCCTAATTTTTGACGACCCCA CGCGCGCGCGCGTGCTCTTTCCTCCGCTATCATTCCCGCCATTGGATGGA TCGACGAAAAGATTCTGCAAGTTCTTGCCGACGTGTTCCAGGCGCCCGTG TTCACGGCGGCGGCGTCTGATTCCGCGGCAGTAGGGGCGGCGCTGAGGGC AAAGCACGGGGTGGAAGGCCTGAGGCGAGGGGTTCCGTACGTGCCCTTTG CCGAGGTCTACGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72020:21..537+

>mRNA_Ecto-sp13_S_contig72020.18325.1 ID=mRNA_Ecto-sp13_S_contig72020.18325.1|Name=mRNA_Ecto-sp13_S_contig72020.18325.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72020:21..537+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGTGCTCGCCACCGGCGGGGGCTCCAACAACGCCGAGATTCTGCAAGT
TCTTGCCGACGTGTTCCAGGCGCCCGTGTTCACGGCGGCGGCGTCTGATT
CCGCGGCAGTAGGGGCGGCGCTGAGGGCAAAGCACGGGGTGGAAGGCCTG
AGGCGAGGGGTTCCGTACGTGCCCTTTGCCGAGGTCTACGGGTGA
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