mRNA_Ecto-sp13_S_contig7202.18323.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7202.18323.1
Unique NamemRNA_Ecto-sp13_S_contig7202.18323.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7202.18323.1 vs. uniprot
Match: A0A6H5LN99_9PHAE (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN99_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 1.250e-90
Identity = 156/202 (77.23%), Postives = 162/202 (80.20%), Query Frame = 1 
Query:  304 GDESALACLWRLWTPCRKKCKQDLPKAEGCPGKHEIRSCHTGDRCTLANEGIYADLTFALDFGFSPAAGGXXXXXXXXXXXXXXXXXVFQERWRSRVGDALTSAVASLLPESCGVLPGDVAISARHPDSTAADAAAAVGGDE---QLSPPSTETSVVVASVHFWKPESAMLSASDGGNLDRNGCVSVLSAPGTASDLEVLVE 900
            GD+SALACLWR+WTPCRKKCKQDLPKAEGCPGKHEIRSCHTG RCTLANEGIYADLTFALDFGFSPAAG                  +FQ+RWRSRVGDAL SAVAS+LPESCGVLPGDVAISARHPDS A  A           QL PPS E S VVASVHFWKP SAMLSASDGGNLDRNGCVSVLSAPGTASD+E LVE
Sbjct:  762 GDDSALACLWRVWTPCRKKCKQDLPKAEGCPGKHEIRSCHTGTRCTLANEGIYADLTFALDFGFSPAAG--DTPDDNDNAGAAAAAAIFQDRWRSRVGDALASAVASILPESCGVLPGDVAISARHPDSAAGTAXXXXXXXXXXXQLPPPSPEASGVVASVHFWKPGSAMLSASDGGNLDRNGCVSVLSAPGTASDIEALVE 961
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7202.18323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LN99_9PHAE1.250e-9077.23Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7202contigEcto-sp13_S_contig7202:1793..3910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size906
Hectar predicted targeting categoryother localisation
Exons2
Cds size903
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463986.8911002-CDS-Ecto-sp13_S_contig7202:1792..22001681463986.8911002-CDS-Ecto-sp13_S_contig7202:1792..2200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7202 1793..2200 +
1681463986.9081914-CDS-Ecto-sp13_S_contig7202:3413..39081681463986.9081914-CDS-Ecto-sp13_S_contig7202:3413..3908Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7202 3414..3908 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7202.18323.1prot_Ecto-sp13_S_contig7202.18323.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7202 1793..3908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7202.18323.1

>prot_Ecto-sp13_S_contig7202.18323.1 ID=prot_Ecto-sp13_S_contig7202.18323.1|Name=mRNA_Ecto-sp13_S_contig7202.18323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp
GGDKKGPDGHKRDDDDGDDGDGFGGGDTGGGGGGGTKDEPRQTRDDDDGD
DGDGFGSGGGGEGGDGGDGGSNGGGEGGGGEKNGGVTGKKRRSGDGGDAA
AGDESALACLWRLWTPCRKKCKQDLPKAEGCPGKHEIRSCHTGDRCTLAN
EGIYADLTFALDFGFSPAAGGAPDDDENAGAAAAAAAAVFQERWRSRVGD
ALTSAVASLLPESCGVLPGDVAISARHPDSTAADAAAAVGGDEQLSPPST
ETSVVVASVHFWKPESAMLSASDGGNLDRNGCVSVLSAPGTASDLEVLVE
T
back to top

mRNA from alignment at Ecto-sp13_S_contig7202:1793..3910+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7202.18323.1 ID=mRNA_Ecto-sp13_S_contig7202.18323.1|Name=mRNA_Ecto-sp13_S_contig7202.18323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2118bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7202:1793..3910+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCGACAAGAAGGGTCCAGACGGACACAAACGAGACGATGACGATGG
CGATGACGGTGATGGCTTTGGCGGAGGGGATACCGGCGGCGGCGGCGGCG
GCGGCACCAAGGACGAACCCAGACAGACACGTGACGATGACGATGGAGAC
GACGGTGATGGCTTCGGCAGCGGGGGCGGCGGCGAAGGTGGCGACGGTGG
CGACGGCGGCAGCAACGGCGGCGGAGAGGGTGGCGGCGGCGAGAAGAACG
GCGGGGTCACCGGCAAGAAACGGCGGTCGGGTGATGGTGGGGACGCTGCT
GCAGGTGACGAAAGCGCACTGGCGTGCCTGTGGCGGCTGTGGACCCCTTG
CAGGAAGAAGTGCAAGCAAGACCTGCCCAAGGCTGAAGGGTGTCCGGGAA
AGCACGAGGTGAGATGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGG
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCATATGCTGATAGGTA
GACAGACAAGTACGCAGACAGATAGCCAGGCAGACACATCGTCAGAGACG
GACGCAGACCCCTGGGGGGGGGTGTACTCATAGCCGTGCATGCCGTAGTC
GTTAGACTTTTGACCTCGCATCCCTGCAAAGCCGGGACGGAGCACGCCGG
GGTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGAAGCGCCGTGAGT
TTATAGGCGCGCCGCATGAAGNNNNNNNNNNCGGCATCTTGTGCTTACTT
CCTTGCGGACGAATGACAGCTGGGCATGACTTAATTTATTTTCTGGTGCT
TTCACTTCAGAGACAGTTGCAAGCACTGTGTAATTGCCTCGAGGATGCTT
GACCATTTCAACACAACGTGGTGCGATCATCCCCTTTGCGCGGAGTGAGT
GTTCTCCACCCCGCACAACATGATCTACTCGACCACCACGATGATTACTG
TAAAGAAAAAACAGAGGTTAACAAAAAAAGCGGTAACCTCGTTGCCGAGT
TCACGAAGTGAATTGGCTTGTTTTACAACGTCGTTGCCAAGCGACGAAAA
CCCAACCCCGATGGTAAACACTAAGGGTGGGGAGGGGTGGGGGGGGGGAT
TGTCTCGTGCGCGCTTGTTTTTTGGGGGGTTTCCCTCCTGTCGAAGCGTT
ACGATCAGCGGTGGCAGGACACACTCTCTTCGATTTCGGGTGGTGGCTTG
TTACCTGCGCGCGATTTCAGCCTGTTTTCGCAGATTGTTGATGTGCGCAC
TCGGGCTCTGGAAGCGCAAAAAAGGTAGCAAGCTCTCGATGGAATACCTT
TCGCGAAGGAGTCTGTCTGCTTCCGTCGTGAGCGCAGGCGTTCGTGTACA
TGCGGGGGTGTTTTGTCCCTCGATGAACGAGGGAGTGTCCGGAGGACAGG
GCTGTGAACGGACTGGACGTCATGTCTCGAGGACGACGACGACGACGTAA
ATGAGGTCGCCGATGCCTTTTGCCAGAATCACTGATCGTGTCCTTCTCCA
AGCTTGCGGGGTGGCCGAGCACGTCCGGCCATCCCCAACCGGTGCGTCTT
CTCCCTCCTGTCCTTTGACGCTTGCCCCTTTGCCCCCGTCCCCGACCGAC
GAACAAAAAAAATCGAAACAGATACGCTCCTGCCACACGGGGGACCGCTG
CACCTTGGCCAACGAAGGCATCTACGCGGACCTGACGTTTGCGCTCGACT
TCGGGTTCAGCCCCGCCGCGGGTGGTGCCCCGGACGATGACGAAAACGCC
GGCGCCGCCGCGGCGGCGGCGGCGGCCGTCTTCCAGGAGCGGTGGAGAAG
TCGTGTCGGGGACGCCCTGACCAGCGCCGTGGCGAGCCTTCTCCCGGAGT
CATGCGGCGTCCTGCCCGGCGACGTCGCTATCTCCGCGCGACATCCGGAC
TCCACCGCCGCCGACGCCGCTGCCGCCGTAGGCGGCGACGAGCAGCTGTC
GCCTCCCTCGACGGAGACTAGCGTTGTGGTAGCCTCGGTGCACTTCTGGA
AACCCGAGTCGGCGATGCTGTCCGCGTCTGACGGGGGCAACCTGGACAGG
AACGGGTGCGTCTCCGTCCTCTCGGCTCCGGGGACCGCGTCCGACCTCGA
GGTTCTCGTGGAGACGGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7202:1793..3910+

>mRNA_Ecto-sp13_S_contig7202.18323.1 ID=mRNA_Ecto-sp13_S_contig7202.18323.1|Name=mRNA_Ecto-sp13_S_contig7202.18323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7202:1793..3910+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCGACAAGAAGGGTCCAGACGGACACAAACGAGACGATGACGATGG
CGATGACGGTGATGGCTTTGGCGGAGGGGATACCGGCGGCGGCGGCGGCG
GCGGCACCAAGGACGAACCCAGACAGACACGTGACGATGACGATGGAGAC
GACGGTGATGGCTTCGGCAGCGGGGGCGGCGGCGAAGGTGGCGACGGTGG
CGACGGCGGCAGCAACGGCGGCGGAGAGGGTGGCGGCGGCGAGAAGAACG
GCGGGGTCACCGGCAAGAAACGGCGGTCGGGTGATGGTGGGGACGCTGCT
GCAGGTGACGAAAGCGCACTGGCGTGCCTGTGGCGGCTGTGGACCCCTTG
CAGGAAGAAGTGCAAGCAAGACCTGCCCAAGGCTGAAGGGTGTCCGGGAA
AGCACGAGATACGCTCCTGCCACACGGGGGACCGCTGCACCTTGGCCAAC
GAAGGCATCTACGCGGACCTGACGTTTGCGCTCGACTTCGGGTTCAGCCC
CGCCGCGGGTGGTGCCCCGGACGATGACGAAAACGCCGGCGCCGCCGCGG
CGGCGGCGGCGGCCGTCTTCCAGGAGCGGTGGAGAAGTCGTGTCGGGGAC
GCCCTGACCAGCGCCGTGGCGAGCCTTCTCCCGGAGTCATGCGGCGTCCT
GCCCGGCGACGTCGCTATCTCCGCGCGACATCCGGACTCCACCGCCGCCG
ACGCCGCTGCCGCCGTAGGCGGCGACGAGCAGCTGTCGCCTCCCTCGACG
GAGACTAGCGTTGTGGTAGCCTCGGTGCACTTCTGGAAACCCGAGTCGGC
GATGCTGTCCGCGTCTGACGGGGGCAACCTGGACAGGAACGGGTGCGTCT
CCGTCCTCTCGGCTCCGGGGACCGCGTCCGACCTCGAGGTTCTCGTGGAG
ACG
back to top