mRNA_Ecto-sp13_S_contig72014.18322.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72014.18322.1
Unique NamemRNA_Ecto-sp13_S_contig72014.18322.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72014.18322.1 vs. uniprot
Match: D7FWD8_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD8_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 9.800e-12
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   22 ATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSL 120
            A Y GVKRWSRHVDLFSMKFVMVPVVED HW L
Sbjct:  260 AAYGGVKRWSRHVDLFSMKFVMVPVVEDEHWRL 292
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BLAST of mRNA_Ecto-sp13_S_contig72014.18322.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.580e-7
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   22 ATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSL 120
            A YS V+ W+R+VDLF  KFV+VPVVED HWSL
Sbjct:  422 AAYSKVQHWTRNVDLFKKKFVLVPVVEDMHWSL 454
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BLAST of mRNA_Ecto-sp13_S_contig72014.18322.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.960e-7
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   22 ATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSL 120
            A YS V+ W+R VDLF  KFV+VPVVED HWSL
Sbjct:  724 AAYSKVQHWTRSVDLFKKKFVLVPVVEDLHWSL 756
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BLAST of mRNA_Ecto-sp13_S_contig72014.18322.1 vs. uniprot
Match: D7FP60_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP60_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 4.760e-7
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   22 ATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSL 120
            A YS V+RW   V++F+ KFV+VPVVED HWSL
Sbjct:   18 AAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSL 50
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BLAST of mRNA_Ecto-sp13_S_contig72014.18322.1 vs. uniprot
Match: D7FI86_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI86_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 5.720e-7
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   22 ATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSL 120
            A YS V+RW   V++F+ KFV+VPVVED HWSL
Sbjct:   18 AAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSL 50
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BLAST of mRNA_Ecto-sp13_S_contig72014.18322.1 vs. uniprot
Match: A0A7S3ZZX5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZX5_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.640e-6
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    7 SAALQATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSL 120
            S   Q  ++ V+RW+R VD+F+ KF++VPVVED HWSL
Sbjct:  124 SEKAQRAHARVERWTRGVDVFAKKFLLVPVVEDLHWSL 161
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BLAST of mRNA_Ecto-sp13_S_contig72014.18322.1 vs. uniprot
Match: A0A8J2SX84_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX84_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.640e-6
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    7 SAALQATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSL 120
            S   Q  ++ V+RW+R VD+F+ KF++VPVVED HWSL
Sbjct:  315 SEKAQRAHARVERWTRGVDVFAKKFLLVPVVEDLHWSL 352
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BLAST of mRNA_Ecto-sp13_S_contig72014.18322.1 vs. uniprot
Match: A0A7S4A0P2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0P2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.650e-6
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    7 SAALQATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSL 120
            S   Q  ++ V+RW+R VD+F+ KF++VPVVED HWSL
Sbjct:  156 SEKAQRAHARVERWTRGVDVFAKKFLLVPVVEDLHWSL 193
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BLAST of mRNA_Ecto-sp13_S_contig72014.18322.1 vs. uniprot
Match: A0A7S3JWU2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWU2_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.280e-5
Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   19 QATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSL 120
            Q  +  V+RW+R +D+F +KF+MVPVV+  HWSL
Sbjct:  372 QEAHKRVERWTRRLDIFKLKFIMVPVVQQLHWSL 405
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BLAST of mRNA_Ecto-sp13_S_contig72014.18322.1 vs. uniprot
Match: A0A7S4A074_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A074_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.280e-5
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   16 LQATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSL 120
            L A    V+RW+R VD+F+ KF++VPVVED HWSL
Sbjct:  312 LSAGNERVERWTRGVDVFAKKFLLVPVVEDLHWSL 346
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72014.18322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD8_ECTSI9.800e-1287.88SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
D8LDN6_ECTSI1.580e-769.70ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KTD8_9PHAE2.960e-769.70ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D7FP60_ECTSI4.760e-763.64SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
D7FI86_ECTSI5.720e-763.64SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
A0A7S3ZZX5_9STRA3.640e-655.26Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SX84_9STRA3.640e-655.26Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4A0P2_9STRA3.650e-655.26Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JWU2_9STRA1.280e-552.94Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4A074_9STRA1.280e-560.00Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72014contigEcto-sp13_S_contig72014:2..124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score67.0
Seed ortholog evalue2.3e-09
Seed eggNOG ortholog2880.D7FWD8
Model size123
KEGG koko:K08596
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
Exons1
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0779@2759
EC3.4.22.68
Cds size123
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463986.8503585-CDS-Ecto-sp13_S_contig72014:1..1241681463986.8503585-CDS-Ecto-sp13_S_contig72014:1..124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72014 2..124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72014.18322.1prot_Ecto-sp13_S_contig72014.18322.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72014 2..124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72014.18322.1

>prot_Ecto-sp13_S_contig72014.18322.1 ID=prot_Ecto-sp13_S_contig72014.18322.1|Name=mRNA_Ecto-sp13_S_contig72014.18322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
NPSAALQATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLV
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mRNA from alignment at Ecto-sp13_S_contig72014:2..124-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72014.18322.1 ID=mRNA_Ecto-sp13_S_contig72014.18322.1|Name=mRNA_Ecto-sp13_S_contig72014.18322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72014:2..124- (Ectocarpus species13 EcNAP12_S_4_19m)
AACCCCTCTGCCGCTTTGCAGGCAACGTACAGTGGTGTCAAGCGTTGGTC
CCGGCACGTGGATCTCTTCTCGATGAAGTTCGTCATGGTGCCGGTGGTGG
AGGACGCACACTGGAGCCTCGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72014:2..124-

>mRNA_Ecto-sp13_S_contig72014.18322.1 ID=mRNA_Ecto-sp13_S_contig72014.18322.1|Name=mRNA_Ecto-sp13_S_contig72014.18322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72014:2..124- (Ectocarpus species13 EcNAP12_S_4_19m)
AACCCCTCTGCCGCTTTGCAGGCAACGTACAGTGGTGTCAAGCGTTGGTC
CCGGCACGTGGATCTCTTCTCGATGAAGTTCGTCATGGTGCCGGTGGTGG
AGGACGCACACTGGAGCCTCGTG
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