prot_Ecto-sp13_S_contig72013.18321.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig72013.18321.1
Unique Nameprot_Ecto-sp13_S_contig72013.18321.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length208
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72013.18321.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 1.900e-95
Identity = 143/206 (69.42%), Postives = 161/206 (78.16%), Query Frame = 0 
Query:    8 GAGQGEPWVISLTDFLIAVWHFLLPIFDDVTDLIMLLATFEGRGRLWWACCGVFVLADAERVLLLLVAFSLILCWVPFALLGTDETRGQRFEAVLRFLNGGHDLTLEPVVVRSYPVRGVVWG-----IRPSALRWPILDGIMWATVGSRSKSSSLMRLCGMAGNTPVEQLEQTGFGLSLIDRIVFHHPYSALGRILFSCPHGHHLP 208
            GAG+ EP  +S+ DFL+A+WHFL+PIFDDVTD+I+L+ TFE RG LWWACCG FVLAD ERVL+LLV   L+L WVPFALLGTDE+RG+RFE  L+ LNG HDL LE            VWG     +  SALRWPILDG MW  VGSRSKSSSLMRLCGMAG TPV++LEQ+GFGLSLIDRIV HHPYS LGR LFS PHGHHLP
Sbjct:  161 GAGRVEPLAVSVVDFLVALWHFLIPIFDDVTDVILLIGTFEDRGGLWWACCGAFVLADVERVLILLVTLLLVLLWVPFALLGTDESRGERFEVALKCLNGCHDLKLE-----------TVWGGSRFVVPRSALRWPILDGFMWVVVGSRSKSSSLMRLCGMAGYTPVDRLEQSGFGLSLIDRIVDHHPYSLLGRALFSYPHGHHLP 355
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72013.18321.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFA4_9PHAE1.900e-9569.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 35..40
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 89..208
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 64..68
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 69..88
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 41..63
NoneNo IPR availableTMHMMTMhelixcoord: 69..88
NoneNo IPR availableTMHMMTMhelixcoord: 15..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72013contigEcto-sp13_S_contig72013:2..625 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72013.18321.1mRNA_Ecto-sp13_S_contig72013.18321.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig72013 2..625 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig72013.18321.1 ID=prot_Ecto-sp13_S_contig72013.18321.1|Name=mRNA_Ecto-sp13_S_contig72013.18321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
MRGFLFAGAGQGEPWVISLTDFLIAVWHFLLPIFDDVTDLIMLLATFEGR
GRLWWACCGVFVLADAERVLLLLVAFSLILCWVPFALLGTDETRGQRFEA
VLRFLNGGHDLTLEPVVVRSYPVRGVVWGIRPSALRWPILDGIMWATVGS
RSKSSSLMRLCGMAGNTPVEQLEQTGFGLSLIDRIVFHHPYSALGRILFS
CPHGHHLP
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