mRNA_Ecto-sp13_S_contig72013.18321.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72013.18321.1
Unique NamemRNA_Ecto-sp13_S_contig72013.18321.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72013.18321.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 1.900e-95
Identity = 143/206 (69.42%), Postives = 161/206 (78.16%), Query Frame = 1 
Query:   22 GAGQGEPWVISLTDFLIAVWHFLLPIFDDVTDLIMLLATFEGRGRLWWACCGVFVLADAERVLLLLVAFSLILCWVPFALLGTDETRGQRFEAVLRFLNGGHDLTLEPVVVRSYPVRGVVWG-----IRPSALRWPILDGIMWATVGSRSKSSSLMRLCGMAGNTPVEQLEQTGFGLSLIDRIVFHHPYSALGRILFSCPHGHHLP 624
            GAG+ EP  +S+ DFL+A+WHFL+PIFDDVTD+I+L+ TFE RG LWWACCG FVLAD ERVL+LLV   L+L WVPFALLGTDE+RG+RFE  L+ LNG HDL LE            VWG     +  SALRWPILDG MW  VGSRSKSSSLMRLCGMAG TPV++LEQ+GFGLSLIDRIV HHPYS LGR LFS PHGHHLP
Sbjct:  161 GAGRVEPLAVSVVDFLVALWHFLIPIFDDVTDVILLIGTFEDRGGLWWACCGAFVLADVERVLILLVTLLLVLLWVPFALLGTDESRGERFEVALKCLNGCHDLKLE-----------TVWGGSRFVVPRSALRWPILDGFMWVVVGSRSKSSSLMRLCGMAGYTPVDRLEQSGFGLSLIDRIVDHHPYSLLGRALFSYPHGHHLP 355
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72013.18321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFA4_9PHAE1.900e-9569.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72013contigEcto-sp13_S_contig72013:2..625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size624
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-11_006290.1
Cds size624
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463986.8180842-CDS-Ecto-sp13_S_contig72013:1..6251681463986.8180842-CDS-Ecto-sp13_S_contig72013:1..625Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72013 2..625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72013.18321.1prot_Ecto-sp13_S_contig72013.18321.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72013 2..625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72013.18321.1

>prot_Ecto-sp13_S_contig72013.18321.1 ID=prot_Ecto-sp13_S_contig72013.18321.1|Name=mRNA_Ecto-sp13_S_contig72013.18321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
MRGFLFAGAGQGEPWVISLTDFLIAVWHFLLPIFDDVTDLIMLLATFEGR
GRLWWACCGVFVLADAERVLLLLVAFSLILCWVPFALLGTDETRGQRFEA
VLRFLNGGHDLTLEPVVVRSYPVRGVVWGIRPSALRWPILDGIMWATVGS
RSKSSSLMRLCGMAGNTPVEQLEQTGFGLSLIDRIVFHHPYSALGRILFS
CPHGHHLP
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mRNA from alignment at Ecto-sp13_S_contig72013:2..625-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72013.18321.1 ID=mRNA_Ecto-sp13_S_contig72013.18321.1|Name=mRNA_Ecto-sp13_S_contig72013.18321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72013:2..625- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCGGCTTTTTGTTCGCAGGTGCCGGACAAGGAGAACCTTGGGTCAT
CTCTTTGACGGATTTCTTGATCGCTGTCTGGCATTTCCTTCTACCAATTT
TTGACGATGTCACAGATTTGATTATGCTTTTGGCAACATTCGAGGGTCGT
GGGCGGTTATGGTGGGCGTGTTGTGGTGTGTTTGTGCTAGCAGATGCCGA
GCGCGTGCTCCTGTTGCTCGTCGCGTTCTCGCTCATTTTGTGCTGGGTTC
CCTTTGCTCTGCTCGGCACCGATGAAACTAGAGGCCAGCGCTTCGAGGCA
GTGTTAAGATTTTTGAACGGCGGGCACGACTTGACCCTGGAACCTGTCGT
GGTGAGAAGTTACCCTGTTCGTGGTGTTGTGTGGGGAATCCGGCCGTCCG
CCCTGCGATGGCCAATCTTGGATGGCATCATGTGGGCTACGGTAGGATCA
CGCTCGAAATCGAGTTCTTTGATGCGATTGTGTGGGATGGCGGGGAACAC
GCCAGTGGAACAACTGGAACAGACTGGATTTGGTCTATCGTTGATCGACA
GAATTGTGTTCCACCACCCCTATAGTGCTCTCGGTCGCATTCTGTTTTCC
TGCCCCCATGGGCACCACCTCCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72013:2..625-

>mRNA_Ecto-sp13_S_contig72013.18321.1 ID=mRNA_Ecto-sp13_S_contig72013.18321.1|Name=mRNA_Ecto-sp13_S_contig72013.18321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72013:2..625- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCGGCTTTTTGTTCGCAGGTGCCGGACAAGGAGAACCTTGGGTCAT
CTCTTTGACGGATTTCTTGATCGCTGTCTGGCATTTCCTTCTACCAATTT
TTGACGATGTCACAGATTTGATTATGCTTTTGGCAACATTCGAGGGTCGT
GGGCGGTTATGGTGGGCGTGTTGTGGTGTGTTTGTGCTAGCAGATGCCGA
GCGCGTGCTCCTGTTGCTCGTCGCGTTCTCGCTCATTTTGTGCTGGGTTC
CCTTTGCTCTGCTCGGCACCGATGAAACTAGAGGCCAGCGCTTCGAGGCA
GTGTTAAGATTTTTGAACGGCGGGCACGACTTGACCCTGGAACCTGTCGT
GGTGAGAAGTTACCCTGTTCGTGGTGTTGTGTGGGGAATCCGGCCGTCCG
CCCTGCGATGGCCAATCTTGGATGGCATCATGTGGGCTACGGTAGGATCA
CGCTCGAAATCGAGTTCTTTGATGCGATTGTGTGGGATGGCGGGGAACAC
GCCAGTGGAACAACTGGAACAGACTGGATTTGGTCTATCGTTGATCGACA
GAATTGTGTTCCACCACCCCTATAGTGCTCTCGGTCGCATTCTGTTTTCC
TGCCCCCATGGGCACCACCTCCCA
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