mRNA_Ecto-sp13_S_contig7199.18315.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7199.18315.1
Unique NamemRNA_Ecto-sp13_S_contig7199.18315.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7199.18315.1 vs. uniprot
Match: D7FJ84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ84_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.460e-51
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 2 
Query:  194 MDRFASMHDEDIDKLGIPNQGGARGGGGEGGWKGRKRARELSQLKDRLDRASEKEQQSWDLLKQAVGKGGGAAADEGRFKATGTSRAAEEMR 469
            MDRFASMHDEDIDKLGIPNQGGARGGGGEGGWKGRKRARELSQLKDRLDRASEKEQQSWDLLKQAVGKGGGAAADEGRFKATGT+RAAEEMR
Sbjct:    1 MDRFASMHDEDIDKLGIPNQGGARGGGGEGGWKGRKRARELSQLKDRLDRASEKEQQSWDLLKQAVGKGGGAAADEGRFKATGTNRAAEEMR 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7199.18315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ84_ECTSI1.460e-5198.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7199contigEcto-sp13_S_contig7199:3655..5494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size727
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_008500.2
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463985.9045923-UTR-Ecto-sp13_S_contig7199:3654..38471681463985.9045923-UTR-Ecto-sp13_S_contig7199:3654..3847Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7199 3655..3847 +
1681463985.937668-UTR-Ecto-sp13_S_contig7199:5296..54941681463985.937668-UTR-Ecto-sp13_S_contig7199:5296..5494Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7199 5297..5494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463985.915268-CDS-Ecto-sp13_S_contig7199:3847..39071681463985.915268-CDS-Ecto-sp13_S_contig7199:3847..3907Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7199 3848..3907 +
1681463985.9262562-CDS-Ecto-sp13_S_contig7199:5020..52961681463985.9262562-CDS-Ecto-sp13_S_contig7199:5020..5296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7199 5021..5296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7199.18315.1prot_Ecto-sp13_S_contig7199.18315.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7199 3848..5296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7199.18315.1

>prot_Ecto-sp13_S_contig7199.18315.1 ID=prot_Ecto-sp13_S_contig7199.18315.1|Name=mRNA_Ecto-sp13_S_contig7199.18315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MDRFASMHDEDIDKLGIPNQGGARGGGGEGGWKGRKRARELSQLKDRLDR
ASEKEQQSWDLLKQAVGKGGGAAADEGRFKATGTSRAAEEMRVGYALSYS
SLFLRPMMGSL*
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mRNA from alignment at Ecto-sp13_S_contig7199:3655..5494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7199.18315.1 ID=mRNA_Ecto-sp13_S_contig7199.18315.1|Name=mRNA_Ecto-sp13_S_contig7199.18315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7199:3655..5494+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACACGGGAGCGACGACCTGCCTCGCCTGACTCGTGCACCCAGCGTGCC
AATCGGTTTCCTCATCAGGGTGTACTCTCCGCTCGGACTGTTTCCTGCGT
GCGTGCTTGTGTGTGTGCATAGTACTGTGGCGGCCTGCACGAGTCACGTA
ACCTGCCGCAGATTGTTGTCGCTGGATTTCTGAGAGAGGAACCATGGACC
GCTTCGCGAGCATGCACGACGAAGACATCGACAAGCTGGGAATCCCGAAC
CAAGTGAGTCAGGACAATTTTCCCATGTTCGTCTCCGCGATAGGATCGCC
TTGTAAGAAGTTGTGAAATGCGAGGAGCGTTTGCAGTCGGCTTGCTGAGC
GAAACGACAAGCAGGGGGCATCGATTTCAACGAGATGCGATCACCGGAAT
GTCACCGCTTTACTCTAAACAATTTCCTTGCCACATTTCGATTGAACCAT
CCGTAAGTTGATCAAGGAGTGGCATCATTTTTACTCATGCAGGAGTGTCA
TCCATCTGATTTCTTCCTCCGAACGACTACCCTCTCTCTCCTCAAACATT
CGCGGAATCTTTACAGCAGTGTCGTCTCGTAAAATTCATTAATCTATTTA
GATACTTCGGTAGTCGCACCCAATGTCGCCCTCCCCGCGAAACACCCGTA
GTTTCCGTTCTTGTCTGGGGGGATCATTCGTCAAGGGTTGTCACGTTGAA
AGGAGCGAGTAGGCGCACCTATCCTCTTCCTCTCCACAACGACACGTTGT
AGGAATTGTCATGTTCAATAGGCGGAACAACTTTGTAATTGCACCGCTTG
TTGGCGGCCTTCTCCCGCAAAGCCCGCCTCCTGAACGGCGGCACCAAAAC
ACGGCCTTACGACAGTCACAAACGACTTGTAAGATTTCCCAACATGAGCC
GAGGCGAAAGCACGGCGAACGCGATCCACAGGCGACCTCTTTTACGGCAG
GCCATCATACAAAAATTTTCTTGTCCAGCGGGCGCTCTCTCCTCCAGCCT
CCGAACCCCTTTTCCCGCCGCAACTGCGTGCTCCTCTTGCGGACGGCGGT
CCGCCCGCCCTCTTATCCGTCCTCGTGTGCCGACGTGCTGTCGGCTAAGC
CGTCCCTTCCTCTGTAACAGGGGTTGAACGCTTGTTTTGCAAGCTTTGCA
GTCCGCCAGACGAGGCCTGAAAGTCCTTGCTACAAAATAGTCATGCTCAG
GTGGATGTGCTGGTAGGGGGACGGGGTGTGAGAAGGAGTGCTTGCCACGA
CAGCAGTCTTCTGTATGCAGTACCATCGGGACGCATGGTGTGGTAGAACC
CTCCTACCTCTGACCAACGGTTTCCTCTACGGGTGTATCCCACGGCCGCT
TTGCTGCTTTCGCTAGGGAGGTGCGCGAGGCGGCGGGGGAGAGGGTGGCT
GGAAAGGCCGGAAACGCGCGAGAGAGCTGTCCCAGCTGAAGGACAGGCTG
GACAGGGCCTCCGAGAAGGAGCAGCAGTCTTGGGACCTCCTGAAGCAGGC
CGTGGGAAAGGGGGGAGGCGCGGCAGCCGACGAGGGGCGCTTCAAGGCCA
CCGGCACCAGCCGGGCAGCGGAGGAGATGCGGGTGGGCTACGCACTTTCC
TACTCCTCCCTTTTTCTGCGGCCAATGATGGGCTCACTGTGAAGCGTGTT
TTGTTTCCGGCTTTCTCCCTCCCTGTGTAGAGATGAGGACCGTTTGGAGA
CCACCAGCCAGGTGGCGAAGCGACGCAAGGTCATGTACCCTCAGTGCGTC
GGTGTTCTGTGAATCGCCCCAGATGATACATCACGGGCGGCTCCAGGCAC
GGTATCACCAGTACTCTGTTGTACAGCGTGTGTCCAGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7199:3655..5494+

>mRNA_Ecto-sp13_S_contig7199.18315.1 ID=mRNA_Ecto-sp13_S_contig7199.18315.1|Name=mRNA_Ecto-sp13_S_contig7199.18315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7199:3655..5494+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCGCTTCGCGAGCATGCACGACGAAGACATCGACAAGCTGGGAAT
CCCGAACCAAGGAGGTGCGCGAGGCGGCGGGGGAGAGGGTGGCTGGAAAG
GCCGGAAACGCGCGAGAGAGCTGTCCCAGCTGAAGGACAGGCTGGACAGG
GCCTCCGAGAAGGAGCAGCAGTCTTGGGACCTCCTGAAGCAGGCCGTGGG
AAAGGGGGGAGGCGCGGCAGCCGACGAGGGGCGCTTCAAGGCCACCGGCA
CCAGCCGGGCAGCGGAGGAGATGCGGGTGGGCTACGCACTTTCCTACTCC
TCCCTTTTTCTGCGGCCAATGATGGGCTCACTGTGA
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