mRNA_Ecto-sp13_S_contig719.18306.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig719.18306.1
Unique NamemRNA_Ecto-sp13_S_contig719.18306.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig719.18306.1 vs. uniprot
Match: A0A6H5JVK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK6_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.030e-33
Identity = 130/190 (68.42%), Postives = 133/190 (70.00%), Query Frame = 1 
Query:  247 GGDEGDLQSVSELGXXXXXXXXXXXXXXX------AADQNPGIEALYGGEISDXXXXXXYDDDEGDLPANNDIAIYSDGDEDDGVGQVPYDEEXXXXXXXXDALGEIANGAAQLAAAAGQHIQXXXXXXXXXXRRLRGENDMTRGEEGDVEYDLALGDIANGAAELAATAAQAGQDIQDEVGGLIEQHDE 798
            GGDEGDLQSVSELG XXXXXXXXXXXXXX      AADQNPGIEALYGGEISDXXXXXX        PANNDIAIYSDGDEDDGVGQVPYDEEXXXXXXX  ALG+IANGAAQLAAAAGQHIQ XXXXXXXXX                                      QAGQD QDE+GGL+EQHDE
Sbjct:   89 GGDEGDLQSVSELGGXXXXXXXXXXXXXXXXXXXXAADQNPGIEALYGGEISDXXXXXXXXXXXXXXPANNDIAIYSDGDEDDGVGQVPYDEEXXXXXXX--ALGDIANGAAQLAAAAGQHIQNXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------QAGQDTQDELGGLVEQHDE 255
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BLAST of mRNA_Ecto-sp13_S_contig719.18306.1 vs. uniprot
Match: D8LMF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF0_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.090e-12
Identity = 84/113 (74.34%), Postives = 84/113 (74.34%), Query Frame = 1 
Query:  259 GDLQSVSELGXXXXXXXXXXXXXXXAADQNPGIEALYGGEISDXXXXXXYDDDEGDLPANNDIAIYSDGDEDDGVGQVPYDEEXXXXXXXXDALGEIANGAAQLAAAAGQHIQ 597
            GDLQSVSELGXXXXXXXXXXXXXX AADQNPGIEALYGGEISDXXXXXX                        GVGQVPYD  XXXXXXXX ALG IANGAAQLAAAAGQHIQ
Sbjct:  182 GDLQSVSELGXXXXXXXXXXXXXXSAADQNPGIEALYGGEISDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGQVPYD--XXXXXXXXXALGVIANGAAQLAAAAGQHIQ 292
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig719.18306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVK6_9PHAE1.030e-3368.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMF0_ECTSI1.090e-1274.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig719contigEcto-sp13_S_contig719:12578..17507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size937
Hectar predicted targeting categoryother localisation
Exons8
Cds size936
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig719.18306.1prot_Ecto-sp13_S_contig719.18306.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig719 12578..17507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463984.4352796-CDS-Ecto-sp13_S_contig719:12577..126921681463984.4352796-CDS-Ecto-sp13_S_contig719:12577..12692Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig719 12578..12692 +
1681463984.44609-CDS-Ecto-sp13_S_contig719:13071..133401681463984.44609-CDS-Ecto-sp13_S_contig719:13071..13340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig719 13072..13340 +
1681463984.468316-CDS-Ecto-sp13_S_contig719:14208..142861681463984.468316-CDS-Ecto-sp13_S_contig719:14208..14286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig719 14209..14286 +
1681463984.4819372-CDS-Ecto-sp13_S_contig719:14930..150021681463984.4819372-CDS-Ecto-sp13_S_contig719:14930..15002Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig719 14931..15002 +
1681463984.4928534-CDS-Ecto-sp13_S_contig719:15458..155511681463984.4928534-CDS-Ecto-sp13_S_contig719:15458..15551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig719 15459..15551 +
1681463984.5045168-CDS-Ecto-sp13_S_contig719:15602..156651681463984.5045168-CDS-Ecto-sp13_S_contig719:15602..15665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig719 15603..15665 +
1681463984.5136356-CDS-Ecto-sp13_S_contig719:16523..166741681463984.5136356-CDS-Ecto-sp13_S_contig719:16523..16674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig719 16524..16674 +
1681463984.52261-CDS-Ecto-sp13_S_contig719:17412..175071681463984.52261-CDS-Ecto-sp13_S_contig719:17412..17507Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig719 17413..17507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig719.18306.1

>prot_Ecto-sp13_S_contig719.18306.1 ID=prot_Ecto-sp13_S_contig719.18306.1|Name=mRNA_Ecto-sp13_S_contig719.18306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=312bp
ADLDEEPAVPVEDLSEDDDGEEDGGDGGQEDDGGGGIVEGEEDGDDDCDD
EDEEDPRQEVDLGSNDSVEEEEEEEEEEEEEEGGDEGDLQSVSELGGEEE
EEEEEDDDEGSAADQNPGIEALYGGEISDEDDDDEYDDDEGDLPANNDIA
IYSDGDEDDGVGQVPYDEEDDDEDEDDDALGEIANGAAQLAAAAGQHIQD
EADGDEEEDRRLRGENDMTRGEEGDVEYDLALGDIANGAAELAATAAQAG
QDIQDEVGGLIEQHDEDEAEDDDDDANDQKGLQQVDDGGGEEEEEEEEDE
EREPASELLVP*
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mRNA from alignment at Ecto-sp13_S_contig719:12578..17507+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig719.18306.1 ID=mRNA_Ecto-sp13_S_contig719.18306.1|Name=mRNA_Ecto-sp13_S_contig719.18306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4930bp|location=Sequence derived from alignment at Ecto-sp13_S_contig719:12578..17507+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGACCTTGACGAAGAGCCTGCGGTGCCGGTGGAAGACCTGAGCGAGGA
TGACGATGGAGAGGAGGACGGGGGGGACGGCGGTCAGGAAGATGATGGTG
GTGGTGGCATCGTCGGTGAGTTCAGGGGGGGAACCGCTGAATGGTTCGCC
TTAATGAGCACCTCTAGGGTTGTTGGCGTGAGGGCGGGGAGTGGCGCGCA
CCAGGCTTCCGTAACGGCGTCGACAGTCACTTTTTTGTCATGTCTGGGAG
TGGAAGAAGCAATAAGGTGACCCTGGATCGTTTCTCTGGCACATCCAGTT
TGTGTACGATGAGAGATGGGCATGATTCGGAGGAATTCCTGCGTCGCTGA
AATGTCTACGCGTTACGTTCGCGTTGGTTCGGGGAAGGGTTGAAGTTAAT
GGCATTATCTTCGAAACAGTAGAAGTGCCGCCGTCTTCATGTTGGTATCC
ATCTTCGTTTCGCGTGCGGGGGGATTGCTACCCGTTCGTTCCAGAAGGGG
AAGAAGACGGCGACGACGACTGCGACGATGAGGATGAGGAGGACCCGCGT
CAAGAGGTTGATCTAGGATCCAACGATTCTGTTGAGGAAGAAGAGGAAGA
GGAAGAGGAGGAAGAAGAGGAGGAGGGGGGCGATGAAGGTGACCTGCAAT
CGGTATCGGAGCTGGGGGGAGAGGAGGAGGAAGAGGAAGAGGAGGATGAT
GATGAAGGGAGCGCTGCCGACCAGAACCCGGGGATCGAGGCACTCTATGG
GGGGGAGATATCGGTGAGACCCTAGCTCTTCGACGATCGGACGAATATAG
TGTTGTCAAACTTTAGTTATGTAAGATAAATGTGATAGGGGGAGCGTTTT
GTATGTTCTGCTTTTCAGTCGAGCCCGCGTTAAAAACACGCATGTGTTTT
TGTTGAAAGCGTTTTCAACGCGGAGAAGAGTCGTTAACATCCCGGGGGGG
GTAGCTTGCTGTCCCCGGGGCCAAGGTAGGAACATGCGTCATAAGACGCG
CATTTGTATCAGGGATACTGCCTGTAATAGCGCGAAAGCATCATTGACTT
GTCGATCACAACGTGGTATTGGTTGATAGTTGCACATCCTTACACACCAC
ATCATTCGCCGTTGCACCTCAACATTGTAACACTCCAGCCCCCATTGTAG
TTCATAACTTCGGGTACGGTGTACAGTGATGCGGGACGAGGTACGTACTT
TAGTTGTAACAGTGCGCTTTGTTAACTACGGGTAGTCCTGTTTGTGTATC
ATTCCGACGTTGAAAACCTTGCCGAGATGCAGTTCTTCAGCTTCGATTTG
GGGGTCCCGTGTGATGAAAAGGGTACGGGCCCTCTATATGTTTTATCTGC
GGGGCACCCTGCTTCTAAAAGTAAGCTTTTAGTGTCTTTATCGCGGGGAG
TTGACCTTAAGATGAGAGTCTTTCAAGCGGGGGCGACTCTCGGTAGCTTG
TTGGGACAGGAATTAATGCTCGCACAGACAGCTTTCGCTACAAGCTTCAG
CAGCGTACTTCGTTTCTTGACCAGCAGACGTGGCACAAACTTGCGCTTGC
TACTATTCGTGTTGTTTTTGCTCGTTCAATTTCCTCGTTAGTAACCTGTA
TGGTCGATTCAATGGCTTGTTGTTTATTTAGGATGAGGACGACGATGATG
AGTATGATGATGACGAGGGCGACCTGCCGGCAAACAACGACATCGCCATC
TACTCGGACGTGAGAATAGCCTGTTGTTTCTTCCTTGTGGTCGTGGTGTC
AAGTGTTTGCACATTGCTGTGAGACATTCACCCGTTAAGTGAGAGTCGAG
GTGGATCGATTGATTTTCGTCCCGACAAACCGTAACAGCGATCGATGCTG
ATTACCTCCCGCGACGTGCTGTTGCATACGTTAGCTACCTGGATTCAATC
CCTTGAGACTAAACCCAACATCTAGAGAGATGTGAAGTGGAACAAACCGC
GTGTGTAGTTCATCGTCGCGCGTTCGTGAGACGAAGAGCATGGCTGGACG
TGAGTGCATGGCAGTTGTTTCTCGCTTTGTTCTTACACCCGGCGGGCAAC
GAGCTTGTTCGACGCTTGTCTGTCTTGGTCTTCTAGCACGTGTGATGTCT
CTCCCTTTTTGACCCATGGGTACCTTGTCCATTGCGCTTTTACCGATCCA
TCTATCGAACCGGCGTGCGTATGAGCCCTGCGAGACCATGAACATGTAAC
GCGCCAGGGTGCAGTGCAGTATCCACTGCTGTTGTATCCGCTCGCTTTTT
AATTTCGATCCTGCCGGCCGGCATGGGTCACACCGCTAAAGCCGCGAACT
ACGTGGGCGGTTGTGTTTTTCTTCTTTTGTGTGTGTGTTTTCTTTGTTTT
TAGGGAGACGAGGACGATGGCGTGGGGCAGGTGCCGTACGACGAGGAAGA
CGATGACGAAGATGAAGACGACGATGTGAGTTGGGAGACGACATGGATAG
AGGGATAGAGAGACAGCCAGACAGAGAGGCAGACACACACGGAGAGAGAG
ACACACACACACGGAGAGAGAGACACACACACACACAGAGAGAGAGGGAC
AAACACAGAGACAGACAGGCAGACAGCGCTTGCGAGAGTGGGGTGGAGGC
TGATGTGGCGATCTGGGTCTTGTTTGTGGTAGCGGCGGGTGCAGGTTGTA
GTCGTTGCGGTTGAGGGTGGTCGTGGCGGGTGACGACGGTAGGGTGGACC
TAGTGCTCGTTATTGACGGTGGCGTTCCCGCCGCTATCGTTGTCTGCTGC
TGTTCATTCGCCTCCTTCTTAGATCGACGTACGTGCGTAGGCGTCATCAG
TCTCATTACGTAAACTCAAACTCGACCGAAGTCACACGTTTGTTTGTTTG
TTTGTTTGTTTGTTTGTTTGTTTCCCGCCAGGCTCTCGGTGAGATCGCCA
ACGGGGCGGCGCAGCTGGCGGCTGCCGCGGGGCAGCACATCCAAGACGAG
GCGGACGGCGACGAAGAGGAAGATGTGAGAAGACCAGCCGGCAGAGAGAA
AAGAGAGAAAAATAGCAGGAACAAGCGTAGACTGCGTGGGGAAAATGACA
TGACCAGAGGAGAGGAAGGAGACGTAGAGTACGACCTTGTCCTTGCAGAA
TGCCACGTATTGCTCGTGGTGTGCCATACACACACACACCTCGACATAAT
CGATTTTCATGGCTCGATACCTCACCAACAAAGAGTTGCCGATATCAAGA
CAAGTTCCTGTTTTTTCTTCTTCTTTTTTCCTTTTTTTTTGTCTTTTTTT
TTTGTTGTCAAGCTAGCACGTGTCCGGAGAGGACAGATAGACCTCCGCCC
TTCTTATTTATTGATTCGTTGCCCTGCGGCGGGTGCATTTTTCGCGTGTG
ACCGAGAAGGCAAGGTTTACCGCTGTGGTGTTGTTGTGTTGCCCATGTTC
ACGTATCGTATCCTGGAGTTGCGGGCTTGGAAAGGTTTGGTGTTCGTGTC
GGAGCTTGCCTGTATCAGGGGTCAGCTCTACGCGATGCATTCGTTGTCTA
TTGACCAGGGGGCGGTGGGAGTAGCAGTGATTCGAACAGCCGCCCGCAGC
ACTGTTTGAGAATGTCAACGATAGGCGCGCAGGATGTGACGTGCTCCGTT
TGTCGTGTTTCTGCAACGGTAGATTTGAACGTGAAGTTGTTGTTGACGCT
GGTCGCGGTGATTGTAGGATCATGCTTTAACGCTGGCGTTTGGCGTTGGC
GTTGGCGTTGGCGTTACGGCCGTTGCTGCCTGTCTACCTGTCTGCTACTG
TTGATTCGAGCATCTGACTCTGTTCCCTCAAGAGTCGACGTGCACAGGCG
ACATTCTTCATCAGTCTGCTGCTGCTGCTGCTGTTCGAGCACCAGACGCT
GTTATCCCGAAGACCCACACGCGTAGCAGGCCTCACTCTTTGTGAAGTCA
AACCAAACTTTCCCCCTAACCCAAACCCACACGCTTGCCCCCCAAGGCTC
TCGGTGACATCGCAAACGGGGCGGCTGAACTGGCGGCAACCGCGGCGCAA
GCGGGGCAGGACATCCAAGACGAGGTGGGCGGGCTGATCGAACAACACGA
CGAGGACGAAGCCGAAGACGATGACGACGACGCTAACGACCAGAAAGGTG
ATGGAGTCGACTGATTCCTTTTTGGACATCGTGCACCGTTGTGTAATTCC
GTGGTGCTGGTCGCACTTGCTCCCTTGCGTTTCTCAATGTATGACGCCCT
CAGCGCAGAGGTCGGTATGCGGTAAGACCTAGGGGCGGATTTAGGGGGGA
TCTCGCGTGTCCCAAATCATGGCACAGCGTTGCATGCCGCAAGCCCGTTG
CTTCGACGAAGCACACACGTGACCAAGATCAAAATACTCGATCGACTCGA
AATAAGTCGTGTCGTCTTTCCAGGCGCTCGGGTTATCAACTCGCCTCGCT
CAAAGACGAAATTAGTTTCGGAACCACGATGCCCTGTGAATTCGAAAATG
GGGGGGGGGGGGGGATAACAACCTTCGAGACGCTTCCCCGTGTTGAAATC
GCTCTACAACATTTTTAATGCGAGGTGTGCGTCTTTCAAGCGGGGACGAG
TACGTGCTGCGTGTGTCTCATAAAGTTGCCCTCTCTCGGTTGATGTTGTC
GGAACAATCGTGAACATGTGGTGCAGACGTGCAGGAGCTCTACCTGTTGT
GCCTTTTTTTCGTCGGACGGTCTCTTGGTTTGTTCCGCGGCACCTTCCAC
GGTTTCATTTTGCTTTCGCCAACCTACCCAGTTGTGTTTTTGGTCGTAGA
TGCTTGCCTGCCGCGCCTTTCACGGTTTCATTTTTTTTTCAGCCCGCACG
ATTTTGGTCGGTCACGGATTGCGTGCTGCGAACAGGGTTGCAACAGGTGG
ACGATGGTGGTGGCGAAGAGGAGGAGGAAGAGGAAGAGGATGAGGAGCGA
GAACCAGCTAGTGAGTTACTGGTACCATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig719:12578..17507+

>mRNA_Ecto-sp13_S_contig719.18306.1 ID=mRNA_Ecto-sp13_S_contig719.18306.1|Name=mRNA_Ecto-sp13_S_contig719.18306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=936bp|location=Sequence derived from alignment at Ecto-sp13_S_contig719:12578..17507+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGACCTTGACGAAGAGCCTGCGGTGCCGGTGGAAGACCTGAGCGAGGA
TGACGATGGAGAGGAGGACGGGGGGGACGGCGGTCAGGAAGATGATGGTG
GTGGTGGCATCGTCGAAGGGGAAGAAGACGGCGACGACGACTGCGACGAT
GAGGATGAGGAGGACCCGCGTCAAGAGGTTGATCTAGGATCCAACGATTC
TGTTGAGGAAGAAGAGGAAGAGGAAGAGGAGGAAGAAGAGGAGGAGGGGG
GCGATGAAGGTGACCTGCAATCGGTATCGGAGCTGGGGGGAGAGGAGGAG
GAAGAGGAAGAGGAGGATGATGATGAAGGGAGCGCTGCCGACCAGAACCC
GGGGATCGAGGCACTCTATGGGGGGGAGATATCGGATGAGGACGACGATG
ATGAGTATGATGATGACGAGGGCGACCTGCCGGCAAACAACGACATCGCC
ATCTACTCGGACGGAGACGAGGACGATGGCGTGGGGCAGGTGCCGTACGA
CGAGGAAGACGATGACGAAGATGAAGACGACGATGCTCTCGGTGAGATCG
CCAACGGGGCGGCGCAGCTGGCGGCTGCCGCGGGGCAGCACATCCAAGAC
GAGGCGGACGGCGACGAAGAGGAAGATCGTAGACTGCGTGGGGAAAATGA
CATGACCAGAGGAGAGGAAGGAGACGTAGAGTACGACCTTGCTCTCGGTG
ACATCGCAAACGGGGCGGCTGAACTGGCGGCAACCGCGGCGCAAGCGGGG
CAGGACATCCAAGACGAGGTGGGCGGGCTGATCGAACAACACGACGAGGA
CGAAGCCGAAGACGATGACGACGACGCTAACGACCAGAAAGGGTTGCAAC
AGGTGGACGATGGTGGTGGCGAAGAGGAGGAGGAAGAGGAAGAGGATGAG
GAGCGAGAACCAGCTAGTGAGTTACTGGTACCATAA
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