mRNA_Ecto-sp13_S_contig7183.18301.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7183.18301.1
Unique NamemRNA_Ecto-sp13_S_contig7183.18301.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7183.18301.1 vs. uniprot
Match: A0A6H5KSZ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSZ7_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 7.530e-67
Identity = 117/127 (92.13%), Postives = 120/127 (94.49%), Query Frame = 1 
Query:    1 MRTSVTSFIAAGTLACSSSASAFLFPSAAVDLRSAAPTSVASQRISRSCSGRRAVVLFAEKEGGDEEQEPMDLDLEQMFEVFEAADKEVSDEEVGKKGGKKPAAGAKDPAEAMGDMLSSFFGGGDKK 381
            MRTS TSFIAAG+LAC SSASAFLFPSAAVDLRSAAPTSVASQ ISRS SGRRAV+LFAEKE G EEQEPMDLDLEQMFEVFEAADKEVSDEEVGKKGGKKPAA AKDPAEAMGDMLSSFFGGG+KK
Sbjct:    1 MRTSATSFIAAGSLACLSSASAFLFPSAAVDLRSAAPTSVASQSISRSSSGRRAVILFAEKEDGAEEQEPMDLDLEQMFEVFEAADKEVSDEEVGKKGGKKPAARAKDPAEAMGDMLSSFFGGGEKK 127
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BLAST of mRNA_Ecto-sp13_S_contig7183.18301.1 vs. uniprot
Match: A0A835YKL6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKL6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.320e-7
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:  202 QEPMDLDLEQMFEVFEAADKEVSDEEVGKKGGKKPAAGAKDPAEAMGDMLSSFFGG 369
            QE  DL+LE MFEVF+ ADK +SD+EVGK GGK       D  + + DML S FGG
Sbjct:    5 QEVTDLNLEDMFEVFDKADKSISDKEVGKAGGK-------DAGKDIADMLGSLFGG 53
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7183.18301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSZ7_9PHAE7.530e-6792.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YKL6_9STRA1.320e-755.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7183contigEcto-sp13_S_contig7183:2997..5516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size397
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463984.1934311-CDS-Ecto-sp13_S_contig7183:2996..31531681463984.1934311-CDS-Ecto-sp13_S_contig7183:2996..3153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7183 2997..3153 -
1681463984.2031348-CDS-Ecto-sp13_S_contig7183:5276..53231681463984.2031348-CDS-Ecto-sp13_S_contig7183:5276..5323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7183 5277..5323 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463984.212124-UTR-Ecto-sp13_S_contig7183:5323..55161681463984.212124-UTR-Ecto-sp13_S_contig7183:5323..5516Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7183 5324..5516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7183.18301.1prot_Ecto-sp13_S_contig7183.18301.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7183 2997..5323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7183.18301.1

>prot_Ecto-sp13_S_contig7183.18301.1 ID=prot_Ecto-sp13_S_contig7183.18301.1|Name=mRNA_Ecto-sp13_S_contig7183.18301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MRSKSLWILTWNRCSRCSKRPTRRYRTKKWARRGARNQQPGRKTRQRRWA
TCSAVSSEGETRSRLLV*
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mRNA from alignment at Ecto-sp13_S_contig7183:2997..5516-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7183.18301.1 ID=mRNA_Ecto-sp13_S_contig7183.18301.1|Name=mRNA_Ecto-sp13_S_contig7183.18301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2520bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7183:2997..5516- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGACCTCCGTCACTTCGTTCATTGCAGCAGGGACTCTCGCCTGCTC
GTCCTCCGCGAGCGCTTTCCTCTTCCCTTCTGCGGCCGTGGACCTCCGTT
CGGCAGCGCCGACGAGCGTTGCTTCGCAGAGGATCAGCCGCAGCTGCAGC
GGCAGACGTGCGGTGGTGCTGTTCGCCGAGAAGGAGGGCGGTGATGAGGA
GCAAGAGCCTATGGATCTTGACTTGGAACAGATGTTCGAGGTAGGCCTGT
TTGTGTGGTCTGTACGGTAGCCTTGAGTACACTGAGTAGAAAGAACGAAG
TGCAACGTTCAACCATGGGCAGGCACTGCTACCGCTGTTGTACGCCCGCT
GCACGTGTCAAACGTTGGACGCTCTGTCTCCCACACCCGAATTGAATGGG
GGACGATGTCTGTATCACCTGGCCGGCTTCCAGTTGTTTATACCTGACTA
CGTGCGTGATTCAATGCAAGTACCATGTTCACAAGTATGTCAACACATCA
GCAGCTTAGACCAAGAGAAATAGTCTACATATATGTTATGTTACGTCTAC
CACACGTTGCATAAGATACCGCACCCCTTGGACCGATTGTTGAAAGGTCG
ATTACTCCACGACCAAGAGGATGCCGAAGGCAAACGATGCGTGTTCGAAA
AGTTCTCGATGGGACGGTACCAACTCCGCCGATTTCGGAACCGTCACTTT
CCTTGCCGAGAACAGTAATCAAGCTTTGAAAATCGGATAGGGCGTGTGAT
ATCTTATGCAACCTTCGATAGTAGTCCACCGCCGTACAAGTAGAGTGCGG
AAAGAATCTTTTGAAGTCAAATCTTGATCTTGGTCTTTGGCCAAGATTCG
CCCCGAGAAGATACTATGTCGTTGTTTACGGGAACTAGAGATTCCGTCAG
ATCTTGGCCAACACTCTCCAGGGGCCAACTTCTTGCCCTTTCGAACAAAA
AATGGCCCAAGATTTAGAGATTTTCCCCGAGAGGTCAAGAACGACGGACC
TTGGTGGGTGCGGCGAGATTGCAAGGCGATGTATGCTTGGTCAACCTGAT
CGTCCATAACGTTATGAAACCTGCTACTGTAGTACACTTGTAGTTCCTTT
GGCAAAATCTCCTACGCCGGAGTCCGGACCGTTGCCCTTTCATCCCATTT
CCCTCACGGCTCTCCTTTTGAGAGAGCCAGCTGACAAAGAAGGCGTGTTC
GAGATGATACCCCATTCCAAAGGTTTTGTCGAAGACTTCACAGTGCGGTT
GGGGGACACAGCTGCTGGATACATTTTTGTCCCTCTACAAGACTGACGTA
TTTTCATTTGGTCAGCCGGTGTCGATGCCGGGTAAAGAAGCGCGCACACC
CCACCCACCGCCGTTATGTACGTTTCAACTGAAGGTCAGAGAGTGTCTTC
AGAGACACCCTTTGATGAAGCCCATCAGCATTGAATGAGCCAACACATTG
TCGGTGCGGCGTCCGATAGAAGTCTTGATAAAACTGGCCCCTGTGTTTAT
CGATAGAGCCCCTTCCTTCCAAATTCAAGACCCGTTGTCCGGAGCCACCA
CGCTGGAAGACTAAGACTCGCTTCGCGCGCTCTACTCGTGCAGTTTCCCT
CCCCATCTCGTACGGCTTTTATTTTGGAGGTAGTGCACAGGGGACTATCG
ACGCCACTGACGAGGTCTACCGAACCTTCCTCACACTCGCTGAAAATCAG
AGGACTTCGTGTTTTTTTCTTTCTACACCTCGAAGCCCGTCAGCAGAATT
TCGGAGGATCATGGGCTATTTGATATTTGGATTCTGCTCTAGCTGATGTT
GCACAAAAGTGTATGCCTGTTTCTTCTCTTCTAGCACTTTGGTGTGAAGG
TTGTTCGTTCCCCTGCCGACGGAAAGTGTAGCCTCAATGTTCAACCATGC
TCCCCCCGTCTGCCCCGCTCCTCTTACACCGACGGAGCGATGTATTACTC
GACGCTCAGCACAAACCGTTGTTGTTTAACGTAGGGATTATGTGGGAAAG
GGTGATGATCCTTCAACACACGTTTTCCCGTGTGCTCAATCATGCGCACG
ATACATAGCCTACAGTCTTATCTCCATGGCTGGGGGTCATGATCCTCAAA
GGTCCGTTTTCCGTGGACAAAAGTGGTCCCGGTAAGGTGACGGTGCAATC
CAGCCGTTTTCATCTTCACCGGTGTTATCGCGAACAATCGGCAATATGTA
GCGGGCAACCGGCATTGTTGAGAGTATGAAACAACTTGAATATTCCATCT
GTGCCAGAGGATTTGACGGGTAGTGTACAGGGAAAGCGGCATTACCCCAC
CGGCGTTACGGGGACCCACTACTGTACCTACAACGTCACGTTTCAAATGC
TGTCTTCCCGAAGGTGTTCGAAGCGGCCGACAAGGAGGTATCGGACGAAG
AAGTGGGCAAGAAGGGGGGCAAGAAACCAGCAGCCGGGGCGAAAGACCCG
GCAGAGGCGATGGGCGACATGCTCAGCAGTTTCTTCGGAGGGGGAGACAA
GAAGTAGACTGTTGGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7183:2997..5516-

>mRNA_Ecto-sp13_S_contig7183.18301.1 ID=mRNA_Ecto-sp13_S_contig7183.18301.1|Name=mRNA_Ecto-sp13_S_contig7183.18301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7183:2997..5516- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGAGCAAGAGCCTATGGATCTTGACTTGGAACAGATGTTCGAGGTG
TTCGAAGCGGCCGACAAGGAGGTATCGGACGAAGAAGTGGGCAAGAAGGG
GGGCAAGAAACCAGCAGCCGGGGCGAAAGACCCGGCAGAGGCGATGGGCG
ACATGCTCAGCAGTTTCTTCGGAGGGGGAGACAAGAAGTAGACTGTTGGT
TTGA
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