mRNA_Ecto-sp13_S_contig71820.18300.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71820.18300.1
Unique NamemRNA_Ecto-sp13_S_contig71820.18300.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A6H5K275_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K275_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 6.780e-53
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 1
Query:    1 QAIDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNGR 258
            QAIDSNDDYVSAMAQH+DKLVVIKFYDQFCRACDEIRPRYEDLS SQPEEDAVFFDVEFSGAK+LCKQLGIMRLPTVQIYDGTNGR
Sbjct:   80 QAIDSNDDYVSAMAQHEDKLVVIKFYDQFCRACDEIRPRYEDLSRSQPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGR 165          
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: F0YB20_AURAN (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB20_AURAN)

HSP 1 Score: 73.6 bits (179), Expect = 3.480e-15
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    7 IDSNDDYVSAMAQ-HQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNG 255
            ID ++ +++AM     D+LV +KFY  +CRAC  I PR+E L+     ++  FF++EF+  KELC++L I +LP VQ + G+ G
Sbjct:    4 IDGDEAFLAAMQYCTDDRLVAVKFYASWCRACKSIAPRFERLAKEFAGDEVQFFEIEFAANKELCRRLNIKKLPCVQYFRGSLG 87          
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A7S4A7N2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7N2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.770e-14
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    4 AIDSNDDYVSAMAQHQ-DKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNG 255
            AI   D +++AM++   DK+V IKFY  +CRAC  I PR+E L+  +  E+A F+++EFS  K+LC++L I +LP VQ + G  G
Sbjct:  114 AIVDEDTFLAAMSKSAGDKVVAIKFYAGWCRACKTIAPRFERLA-KEFGEEAAFYEIEFSANKDLCRRLDIKKLPCVQFFRGAEG 197          
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A7S3VCG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCG8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.990e-10
Identity = 29/85 (34.12%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    7 IDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQP--EEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNG 255
            ++S +++ + + Q+QDK++++KFY  +CRAC  + P++  +S  +   +   VF  +  + AKE  K LG++ LP+V IY G  G
Sbjct:  119 LESKEEHQALLEQNQDKIILLKFYAPWCRACKGLEPKFIQISKDKKYAKLPLVFAQLSVANAKEYVKALGVLALPSVHIYGGEEG 203          
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A7S3ATR9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATR9_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 1.440e-9
Identity = 31/86 (36.05%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    7 IDSNDDYVSAM--AQHQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNGR 258
            ID  D Y + +  A  ++++VVIKF+  +CRAC  + P++  ++   P  D  F ++ F   K+LCK LGI  LP ++I  G+ G+
Sbjct:   58 IDDTDAYEALIEEATRENRVVVIKFFASWCRACKAMSPKFTRIADDWP--DVEFHEIMFDNNKKLCKSLGIKILPYIEIIGGSGGK 141          
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A7S0CNY7_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CNY7_MICPS)

HSP 1 Score: 60.8 bits (146), Expect = 2.690e-9
Identity = 23/67 (34.33%), Postives = 45/67 (67.16%), Query Frame = 1
Query:   58 LVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNGR 258
            L+V++FY ++C +C  + PR   L+  + E+D +F  ++F   K+LC++LG+++LP   +Y+G+  R
Sbjct:   76 LLVVEFYGKWCNSCRRLYPRLRRLA--EQEQDVLFCKIDFDACKDLCRKLGVVKLPYFHVYNGSGSR 140          
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A2Z7AGF5_9LAMI (Atypical CYS HIS rich thioredoxin 2 (Fragment) n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AGF5_9LAMI)

HSP 1 Score: 59.3 bits (142), Expect = 2.940e-9
Identity = 31/83 (37.35%), Postives = 44/83 (53.01%), Query Frame = 1
Query:    7 IDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNG 255
            I S  +++SA+++  DKLV+++FY  +C +C  I PR  D        D VF  V F   K LCK L +  LP    Y G +G
Sbjct:   14 IHSTQEFLSALSEAGDKLVIVEFYGTWCASCRAIFPRTAD-----EHPDIVFLKVNFDENKSLCKSLNVKVLPHFHFYRGADG 91          
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A843W776_COLES (Thioredoxin domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843W776_COLES)

HSP 1 Score: 60.8 bits (146), Expect = 3.360e-9
Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 1
Query:    7 IDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNG 255
            I S +D++SA++Q  DKLVV  FY  +C +C  + P+   ++   P  D VF  V F   K +CK+L +  LP    Y G +G
Sbjct:   89 IHSTEDFISALSQAGDKLVVADFYGTWCASCRALYPKLCRIAEENP--DVVFLKVNFDKNKPMCKRLNVRVLPYFHFYRGADG 169          
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: C1MWB9_MICPC (Thioredoxin/AMP-activated kinase n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MWB9_MICPC)

HSP 1 Score: 61.6 bits (148), Expect = 3.870e-9
Identity = 25/67 (37.31%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   58 LVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNGR 258
            L+V++FY ++C +C  + PR   L+    E+D +F  +EF   KELC++LG+++LP   +Y+G+  R
Sbjct:  116 LLVVEFYAKWCASCRRLYPRLTKLAAQ--EQDVLFVKIEFDECKELCRKLGVVKLPYFHVYNGSGSR 180          
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A5J4ZYW5_9ASTE (Thioredoxin domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZYW5_9ASTE)

HSP 1 Score: 60.5 bits (145), Expect = 4.480e-9
Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 1
Query:    7 IDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNGR 258
            I S  +Y+SA++Q  D+LV+++FY  +C +C  + P+    +   PE   +F  V F   K +CK L +  LP    Y G NG+
Sbjct:   95 IHSTQEYLSALSQAGDRLVIVEFYGTWCASCRALFPKLCKTAAEHPE--ILFMKVNFDENKPMCKNLNVKVLPYFHFYRGANGQ 176          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K275_9PHAE6.780e-5396.51Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
F0YB20_AURAN3.480e-1541.67Thioredoxin domain-containing protein (Fragment) n... [more]
A0A7S4A7N2_9STRA3.770e-1444.71Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3VCG8_9STRA5.990e-1034.12Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S3ATR9_9EUKA1.440e-936.05Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0CNY7_MICPS2.690e-934.33Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A2Z7AGF5_9LAMI2.940e-937.35Atypical CYS HIS rich thioredoxin 2 (Fragment) n=1... [more]
A0A843W776_COLES3.360e-937.35Thioredoxin domain-containing protein n=1 Tax=Colo... [more]
C1MWB9_MICPC3.870e-937.31Thioredoxin/AMP-activated kinase n=2 Tax=Micromona... [more]
A0A5J4ZYW5_9ASTE4.480e-934.52Thioredoxin domain-containing protein n=1 Tax=Nyss... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71820contigEcto-sp13_S_contig71820:6..630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score173.3
Seed ortholog evalue4.9e-41
Seed eggNOG ortholog2880.D8LIL6
Model size261
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009593,GO:0009941,GO:0010109,GO:0016020,GO:0016491,GO:0016667,GO:0016671,GO:0019222,GO:0031090,GO:0031323,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051606,GO:0051775,GO:0051776,GO:0055114,GO:0065007
Exons2
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
Ec32 ortholog descriptionthioredoxin-like protein
Ec32 orthologEc-11_004310.1
Cds size261
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463984.151997-CDS-Ecto-sp13_S_contig71820:5..921681463984.151997-CDS-Ecto-sp13_S_contig71820:5..92Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71820 6..92 -
1681463984.165378-CDS-Ecto-sp13_S_contig71820:456..6301681463984.165378-CDS-Ecto-sp13_S_contig71820:456..630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71820 457..630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71820.18300.1prot_Ecto-sp13_S_contig71820.18300.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71820 6..630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71820.18300.1

>prot_Ecto-sp13_S_contig71820.18300.1 ID=prot_Ecto-sp13_S_contig71820.18300.1|Name=mRNA_Ecto-sp13_S_contig71820.18300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
QAIDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEE
DAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNGR*
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mRNA from alignment at Ecto-sp13_S_contig71820:6..630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71820.18300.1 ID=mRNA_Ecto-sp13_S_contig71820.18300.1|Name=mRNA_Ecto-sp13_S_contig71820.18300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=625bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71820:6..630- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGATCGACTCGAACGACGACTACGTGAGCGCCATGGCGCAGCACCA GGACAAGCTGGTGGTGATCAAGTTTTACGACCAGTTCTGCAGGGCCTGCG ATGAGATCCGGCCGCGATACGAGGACCTCTCTTGTTCGCAGCCGGAGGAG GACGCCGTGTTCTTCGACGTGGAGGTGCGTGCGAAGAACGAAGAAAAAAA ACTCCACCAGACTTCAGTGTGTGGTCGCAGCAATTGTGGGATCACCCCTC TGTATTGCGCGTTTTTAACATGTGTAGACTGCCGTGTATCCATGTGGTGT TAGGTTGCACCGCTACCGAGACCACTCGTTAATGTACTCTCCCTATTTTT TTATGACCCTTTGTCGGCGGTGTCATTGTTGCGTTATTGTAGTCCTCTTC CAAATCTTTTGTTCTTCCTCGTCTGTCTTCTTGTCCATGCCTGTGTGACT CCTGTGATGTTAATTCTTTGCTGTACATTTGTTTTTTCGTCGCCACCCTT TCGTGTCACGTGTGCCACGGCCGACTCTTGGCATGAAGTTCTCTGGGGCC AAGGAACTCTGCAAGCAGCTCGGCATCATGCGGCTACCCACCGTGCAGAT CTACGACGGCACAAACGGCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71820:6..630-

>mRNA_Ecto-sp13_S_contig71820.18300.1 ID=mRNA_Ecto-sp13_S_contig71820.18300.1|Name=mRNA_Ecto-sp13_S_contig71820.18300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71820:6..630- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGATCGACTCGAACGACGACTACGTGAGCGCCATGGCGCAGCACCA
GGACAAGCTGGTGGTGATCAAGTTTTACGACCAGTTCTGCAGGGCCTGCG
ATGAGATCCGGCCGCGATACGAGGACCTCTCTTGTTCGCAGCCGGAGGAG
GACGCCGTGTTCTTCGACGTGGAGTTCTCTGGGGCCAAGGAACTCTGCAA
GCAGCTCGGCATCATGCGGCTACCCACCGTGCAGATCTACGACGGCACAA
ACGGCAGGTGA
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