mRNA_Ecto-sp13_S_contig71820.18300.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A6H5K275_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K275_9PHAE) HSP 1 Score: 172 bits (436), Expect = 6.780e-53 Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 1
Query: 1 QAIDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNGR 258
QAIDSNDDYVSAMAQH+DKLVVIKFYDQFCRACDEIRPRYEDLS SQPEEDAVFFDVEFSGAK+LCKQLGIMRLPTVQIYDGTNGR
Sbjct: 80 QAIDSNDDYVSAMAQHEDKLVVIKFYDQFCRACDEIRPRYEDLSRSQPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGR 165
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: F0YB20_AURAN (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB20_AURAN) HSP 1 Score: 73.6 bits (179), Expect = 3.480e-15 Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 7 IDSNDDYVSAMAQ-HQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNG 255
ID ++ +++AM D+LV +KFY +CRAC I PR+E L+ ++ FF++EF+ KELC++L I +LP VQ + G+ G
Sbjct: 4 IDGDEAFLAAMQYCTDDRLVAVKFYASWCRACKSIAPRFERLAKEFAGDEVQFFEIEFAANKELCRRLNIKKLPCVQYFRGSLG 87
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A7S4A7N2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7N2_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 3.770e-14 Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 1
Query: 4 AIDSNDDYVSAMAQHQ-DKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNG 255
AI D +++AM++ DK+V IKFY +CRAC I PR+E L+ + E+A F+++EFS K+LC++L I +LP VQ + G G
Sbjct: 114 AIVDEDTFLAAMSKSAGDKVVAIKFYAGWCRACKTIAPRFERLA-KEFGEEAAFYEIEFSANKDLCRRLDIKKLPCVQFFRGAEG 197
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A7S3VCG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCG8_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 5.990e-10 Identity = 29/85 (34.12%), Postives = 53/85 (62.35%), Query Frame = 1
Query: 7 IDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQP--EEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNG 255
++S +++ + + Q+QDK++++KFY +CRAC + P++ +S + + VF + + AKE K LG++ LP+V IY G G
Sbjct: 119 LESKEEHQALLEQNQDKIILLKFYAPWCRACKGLEPKFIQISKDKKYAKLPLVFAQLSVANAKEYVKALGVLALPSVHIYGGEEG 203
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A7S3ATR9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATR9_9EUKA) HSP 1 Score: 61.2 bits (147), Expect = 1.440e-9 Identity = 31/86 (36.05%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 7 IDSNDDYVSAM--AQHQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNGR 258
ID D Y + + A ++++VVIKF+ +CRAC + P++ ++ P D F ++ F K+LCK LGI LP ++I G+ G+
Sbjct: 58 IDDTDAYEALIEEATRENRVVVIKFFASWCRACKAMSPKFTRIADDWP--DVEFHEIMFDNNKKLCKSLGIKILPYIEIIGGSGGK 141
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A7S0CNY7_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CNY7_MICPS) HSP 1 Score: 60.8 bits (146), Expect = 2.690e-9 Identity = 23/67 (34.33%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 58 LVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNGR 258
L+V++FY ++C +C + PR L+ + E+D +F ++F K+LC++LG+++LP +Y+G+ R
Sbjct: 76 LLVVEFYGKWCNSCRRLYPRLRRLA--EQEQDVLFCKIDFDACKDLCRKLGVVKLPYFHVYNGSGSR 140
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A2Z7AGF5_9LAMI (Atypical CYS HIS rich thioredoxin 2 (Fragment) n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AGF5_9LAMI) HSP 1 Score: 59.3 bits (142), Expect = 2.940e-9 Identity = 31/83 (37.35%), Postives = 44/83 (53.01%), Query Frame = 1
Query: 7 IDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNG 255
I S +++SA+++ DKLV+++FY +C +C I PR D D VF V F K LCK L + LP Y G +G
Sbjct: 14 IHSTQEFLSALSEAGDKLVIVEFYGTWCASCRAIFPRTAD-----EHPDIVFLKVNFDENKSLCKSLNVKVLPHFHFYRGADG 91
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A843W776_COLES (Thioredoxin domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843W776_COLES) HSP 1 Score: 60.8 bits (146), Expect = 3.360e-9 Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 7 IDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNG 255
I S +D++SA++Q DKLVV FY +C +C + P+ ++ P D VF V F K +CK+L + LP Y G +G
Sbjct: 89 IHSTEDFISALSQAGDKLVVADFYGTWCASCRALYPKLCRIAEENP--DVVFLKVNFDKNKPMCKRLNVRVLPYFHFYRGADG 169
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: C1MWB9_MICPC (Thioredoxin/AMP-activated kinase n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MWB9_MICPC) HSP 1 Score: 61.6 bits (148), Expect = 3.870e-9 Identity = 25/67 (37.31%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 58 LVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNGR 258
L+V++FY ++C +C + PR L+ E+D +F +EF KELC++LG+++LP +Y+G+ R
Sbjct: 116 LLVVEFYAKWCASCRRLYPRLTKLAAQ--EQDVLFVKIEFDECKELCRKLGVVKLPYFHVYNGSGSR 180
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Match: A0A5J4ZYW5_9ASTE (Thioredoxin domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZYW5_9ASTE) HSP 1 Score: 60.5 bits (145), Expect = 4.480e-9 Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 1
Query: 7 IDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEDAVFFDVEFSGAKELCKQLGIMRLPTVQIYDGTNGR 258
I S +Y+SA++Q D+LV+++FY +C +C + P+ + PE +F V F K +CK L + LP Y G NG+
Sbjct: 95 IHSTQEYLSALSQAGDRLVIVEFYGTWCASCRALFPKLCKTAAEHPE--ILFMKVNFDENKPMCKNLNVKVLPYFHFYRGANGQ 176 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71820.18300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig71820.18300.1 >prot_Ecto-sp13_S_contig71820.18300.1 ID=prot_Ecto-sp13_S_contig71820.18300.1|Name=mRNA_Ecto-sp13_S_contig71820.18300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp QAIDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSCSQPEEback to top mRNA from alignment at Ecto-sp13_S_contig71820:6..630- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig71820.18300.1 ID=mRNA_Ecto-sp13_S_contig71820.18300.1|Name=mRNA_Ecto-sp13_S_contig71820.18300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=625bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71820:6..630- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71820:6..630- >mRNA_Ecto-sp13_S_contig71820.18300.1 ID=mRNA_Ecto-sp13_S_contig71820.18300.1|Name=mRNA_Ecto-sp13_S_contig71820.18300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71820:6..630- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |