prot_Ecto-sp13_S_contig7182.18299.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7182.18299.1
Unique Nameprot_Ecto-sp13_S_contig7182.18299.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length409
Homology
BLAST of mRNA_Ecto-sp13_S_contig7182.18299.1 vs. uniprot
Match: D8LIH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH8_ECTSI)

HSP 1 Score: 501 bits (1290), Expect = 2.910e-174
Identity = 299/329 (90.88%), Postives = 307/329 (93.31%), Query Frame = 0
Query:    1 MEEPSNSSEAKGKAAEEGATGGASKAAAKPTRCKKVYHAYCMGFNVGDDELSSCPRHSCVECGEGAGYFCRFCPVSLCGTHFRTDPSGMIAETYESLKHRVRRPFPRTRGGGFGPRSRTQAGGTGTVAGASSXXXXXXXXXXRXXXXXXXXXXXXXXXXGGGRWSVGEAGGEATIAQRRPKRGQTATVAXXXXXXXXXXXXXXXXXXXXDRRSCGVGLPGGGAGFGEHDFVCTGCKMAAKRAVRQYGLLGSLETGGVVLPHGESEGSGDESESDILPVTALPPRDSGAAASGCGAGDGTGDAGGGQEDLVSAPGGAGLAGEPEGGHNIG 329
            MEEPSNSS+AKGK AEEGATGGASKAAAKP RCKKVYHAYCMGFNVGD+ELSSCPRH+CVECGE AGYFCRFCPVSLC  HFRTDPSGMIAETYESLKHRVRRPFPRTRGGGFGPRSRTQAGGTGT+AGASS          RXXXXXXXXXXXXXXXXGGGRWSVGE GGEATIAQRRPKRGQTATVA  XXXXXXXXXXXXXXXXXXDRRSCGVGLPGGGAGFGEHDFVCTGCKMAAKRAVRQYGLLGSLETGGVVLP+GESEGSGDESESDILPVTALPPRD+ AAA+G G  DG+GDAGGGQEDLVSAPGGAGLAGEPEGGHNIG
Sbjct:    1 MEEPSNSSDAKGKVAEEGATGGASKAAAKPPRCKKVYHAYCMGFNVGDEELSSCPRHACVECGEAAGYFCRFCPVSLCDKHFRTDPSGMIAETYESLKHRVRRPFPRTRGGGFGPRSRTQAGGTGTLAGASSSGGGAGS---RXXXXXXXXXXXXXXXXGGGRWSVGEVGGEATIAQRRPKRGQTATVAAPXXXXXXXXXXXXXXXXXXDRRSCGVGLPGGGAGFGEHDFVCTGCKMAAKRAVRQYGLLGSLETGGVVLPYGESEGSGDESESDILPVTALPPRDTAAAANGTG--DGSGDAGGGQEDLVSAPGGAGLAGEPEGGHNIG 324          
BLAST of mRNA_Ecto-sp13_S_contig7182.18299.1 vs. uniprot
Match: A0A6H5J729_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J729_9PHAE)

HSP 1 Score: 492 bits (1266), Expect = 4.380e-169
Identity = 299/334 (89.52%), Postives = 305/334 (91.32%), Query Frame = 0
Query:    1 MEEPSNSSEAKGKAAEEGATGGASKAAAKPTRCKKVYHAYCMGFNVGDDELSSCPRHSCVECGEGAGYFCRFCPVSLCGTHFRTDPSGMIAETYESLKHRVRRPFPRTRGGGFGPRSRTQAGGTGTVAGASSXXXXXXXXXXRXXXXXXXXXXXXXXXXGGGRWSVGEAGGEATIAQRRPKRGQTATVAXXXXXXXXXXXXXXXXXXXXDRRSCGVGLPGGGAGFGEHDFVCTGCKMAAKRAVRQYGLLGSLETGGVVLPHGESEGSGDESESDILPVTALPPRDSGAAASGCGAGDGTGDAGGGQEDLVSAPGGAGLAGEPEGGHNIGDAAVG 334
            ME PSNSS+AKGKAAEEGATGGASKAAAKP RCKKVYHAYCMGFNVGDDELSSCPRH+CVECGE AGYFCRFCPVSLC  HFRTD SGMIAETYESLKHRVRRPFPRTRGGGFGPRSRTQAGGTGTVAGA+S     XXX  RXXXXXXXXXXXXXXXXGGGRWSV EA  E TIAQRRPKRGQTAT A    XXXXXXXXXXXXXXXXDRRSCGVGLPGGGAGFGEHDFVCTGCKMA KRAVRQYGLLGSLETGGVVLP+GESEGSGDE+ESDILPVTALPPRDSGAAASG     G+GDAGGGQEDLVSAPGGAGLAGEPEGGHNIGD AVG
Sbjct:   99 MEGPSNSSDAKGKAAEEGATGGASKAAAKPPRCKKVYHAYCMGFNVGDDELSSCPRHACVECGEAAGYFCRFCPVSLCDKHFRTDSSGMIAETYESLKHRVRRPFPRTRGGGFGPRSRTQAGGTGTVAGANSSSSGGXXXS-RXXXXXXXXXXXXXXXXGGGRWSVREARVEVTIAQRRPKRGQTATTAAPALXXXXXXXXXXXXXXXXDRRSCGVGLPGGGAGFGEHDFVCTGCKMATKRAVRQYGLLGSLETGGVVLPYGESEGSGDETESDILPVTALPPRDSGAAASG-----GSGDAGGGQEDLVSAPGGAGLAGEPEGGHNIGDGAVG 426          
BLAST of mRNA_Ecto-sp13_S_contig7182.18299.1 vs. uniprot
Match: A0A7R9YEZ6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEZ6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.970e-8
Identity = 29/72 (40.28%), Postives = 38/72 (52.78%), Query Frame = 0
Query:   32 RCKKVYHAYCMGFNVGDDELSSCPRHSCVECGEGAGYFCRFCPVSLCGTHFRTDPSGMIAETYESLKHRVRR 103
            RC KVYH YC+G++V D+E+  CP H C  C   +   CR+CP S C  H    PS  + E       R+ R
Sbjct:  606 RCLKVYHDYCLGYSVPDNEVWRCPSHHCEVCAGFSTLHCRYCPTSFCPEHM---PSEALLEEQRRCNSRLER 674          
BLAST of mRNA_Ecto-sp13_S_contig7182.18299.1 vs. uniprot
Match: H3H370_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H370_PHYRM)

HSP 1 Score: 63.5 bits (153), Expect = 2.810e-7
Identity = 25/51 (49.02%), Postives = 31/51 (60.78%), Query Frame = 0
Query:   31 TRCKKVYHAYCMGFNVGDDELSSCPRHSCVECGEGAGYFCRFCPVSLCGTH 81
            +RC KVYH  C+G+ V + +   CPRH C +CG  A Y CRFC  S C  H
Sbjct:  352 SRCPKVYHEDCLGYEVPEGKTWVCPRHRCQDCGIIAQYSCRFCVTSFCEDH 402          
BLAST of mRNA_Ecto-sp13_S_contig7182.18299.1 vs. uniprot
Match: A0A7S3H7L3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7L3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.340e-7
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 0
Query:   32 RCKKVYHAYCMGFNVGD-DELSSCPRHSCVECG-EGAGYFCRFCPVSLC 78
            RC KVYH YC+ F V + DE   CPRH C  CG +   Y C++CPVS+C
Sbjct:  150 RCLKVYHTYCLDFEVAENDEKWCCPRHYCDMCGIQNLKYICKYCPVSIC 198          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7182.18299.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LIH8_ECTSI2.910e-17490.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J729_9PHAE4.380e-16989.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9YEZ6_9STRA2.970e-840.28Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
H3H370_PHYRM2.810e-749.02Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S3H7L3_9STRA3.340e-753.06Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 19..98
e-value: 2.9E-12
score: 48.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7182contigEcto-sp13_S_contig7182:2140..4286 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7182.18299.1mRNA_Ecto-sp13_S_contig7182.18299.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7182 2140..4537 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7182.18299.1 ID=prot_Ecto-sp13_S_contig7182.18299.1|Name=mRNA_Ecto-sp13_S_contig7182.18299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=409bp
MEEPSNSSEAKGKAAEEGATGGASKAAAKPTRCKKVYHAYCMGFNVGDDE
LSSCPRHSCVECGEGAGYFCRFCPVSLCGTHFRTDPSGMIAETYESLKHR
VRRPFPRTRGGGFGPRSRTQAGGTGTVAGASSSSSSGGGAGSRGGRGKRG
RPGRGRRGRGGGRWSVGEAGGEATIAQRRPKRGQTATVAVPVPVLAPAVV
SVSGGGGGGDRRSCGVGLPGGGAGFGEHDFVCTGCKMAAKRAVRQYGLLG
SLETGGVVLPHGESEGSGDESESDILPVTALPPRDSGAAASGCGAGDGTG
DAGGGQEDLVSAPGGAGLAGEPEGGHNIGDAAVGGGAVVAGAAAAVSNAT
AAAAVAANNAAAAVAAEKYFSMFSRRDPPATPEVTTNGGDAGGGTAGGGG
GDGDVEMG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD