mRNA_Ecto-sp13_S_contig7182.18299.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7182.18299.1
Unique NamemRNA_Ecto-sp13_S_contig7182.18299.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7182.18299.1 vs. uniprot
Match: D8LIH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH8_ECTSI)

HSP 1 Score: 501 bits (1290), Expect = 6.280e-173
Identity = 299/329 (90.88%), Postives = 307/329 (93.31%), Query Frame = 1 
Query:    1 MEEPSNSSEAKGKAAEEGATGGASKAAAKPTRCKKVYHAYCMGFNVGDDELSSCPRHSCVECGEGAGYFCRFCPVSLCGTHFRTDPSGMIAETYESLKHRVRRPFPRTRGGGFGPRSRTQAGGTGTVAGASSXXXXXXXXXXRXXXXXXXXXXXXXXXXGGGRWSVGEAGGEATIAQRRPKRGQTATVAXXXXXXXXXXXXXXXXXXXXDRRSCGVGLPGGGAGFGEHDFVCTGCKMAAKRAVRQYGLLGSLETGGVVLPHGESEGSGDESESDILPVTALPPRDSGAAASGCGAGDGTGDAGGGQEDLVSAPGGAGLAGEPEGGHNIG 987
            MEEPSNSS+AKGK AEEGATGGASKAAAKP RCKKVYHAYCMGFNVGD+ELSSCPRH+CVECGE AGYFCRFCPVSLC  HFRTDPSGMIAETYESLKHRVRRPFPRTRGGGFGPRSRTQAGGTGT+AGASS          RXXXXXXXXXXXXXXXXGGGRWSVGE GGEATIAQRRPKRGQTATVA  XXXXXXXXXXXXXXXXXXDRRSCGVGLPGGGAGFGEHDFVCTGCKMAAKRAVRQYGLLGSLETGGVVLP+GESEGSGDESESDILPVTALPPRD+ AAA+G G  DG+GDAGGGQEDLVSAPGGAGLAGEPEGGHNIG
Sbjct:    1 MEEPSNSSDAKGKVAEEGATGGASKAAAKPPRCKKVYHAYCMGFNVGDEELSSCPRHACVECGEAAGYFCRFCPVSLCDKHFRTDPSGMIAETYESLKHRVRRPFPRTRGGGFGPRSRTQAGGTGTLAGASSSGGGAGS---RXXXXXXXXXXXXXXXXGGGRWSVGEVGGEATIAQRRPKRGQTATVAAPXXXXXXXXXXXXXXXXXXDRRSCGVGLPGGGAGFGEHDFVCTGCKMAAKRAVRQYGLLGSLETGGVVLPYGESEGSGDESESDILPVTALPPRDTAAAANGTG--DGSGDAGGGQEDLVSAPGGAGLAGEPEGGHNIG 324
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BLAST of mRNA_Ecto-sp13_S_contig7182.18299.1 vs. uniprot
Match: A0A6H5J729_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J729_9PHAE)

HSP 1 Score: 492 bits (1266), Expect = 9.350e-168
Identity = 299/334 (89.52%), Postives = 305/334 (91.32%), Query Frame = 1 
Query:    1 MEEPSNSSEAKGKAAEEGATGGASKAAAKPTRCKKVYHAYCMGFNVGDDELSSCPRHSCVECGEGAGYFCRFCPVSLCGTHFRTDPSGMIAETYESLKHRVRRPFPRTRGGGFGPRSRTQAGGTGTVAGASSXXXXXXXXXXRXXXXXXXXXXXXXXXXGGGRWSVGEAGGEATIAQRRPKRGQTATVAXXXXXXXXXXXXXXXXXXXXDRRSCGVGLPGGGAGFGEHDFVCTGCKMAAKRAVRQYGLLGSLETGGVVLPHGESEGSGDESESDILPVTALPPRDSGAAASGCGAGDGTGDAGGGQEDLVSAPGGAGLAGEPEGGHNIGDAAVG 1002
            ME PSNSS+AKGKAAEEGATGGASKAAAKP RCKKVYHAYCMGFNVGDDELSSCPRH+CVECGE AGYFCRFCPVSLC  HFRTD SGMIAETYESLKHRVRRPFPRTRGGGFGPRSRTQAGGTGTVAGA+S     XXX  RXXXXXXXXXXXXXXXXGGGRWSV EA  E TIAQRRPKRGQTAT A    XXXXXXXXXXXXXXXXDRRSCGVGLPGGGAGFGEHDFVCTGCKMA KRAVRQYGLLGSLETGGVVLP+GESEGSGDE+ESDILPVTALPPRDSGAAASG     G+GDAGGGQEDLVSAPGGAGLAGEPEGGHNIGD AVG
Sbjct:   99 MEGPSNSSDAKGKAAEEGATGGASKAAAKPPRCKKVYHAYCMGFNVGDDELSSCPRHACVECGEAAGYFCRFCPVSLCDKHFRTDSSGMIAETYESLKHRVRRPFPRTRGGGFGPRSRTQAGGTGTVAGANSSSSGGXXXS-RXXXXXXXXXXXXXXXXGGGRWSVREARVEVTIAQRRPKRGQTATTAAPALXXXXXXXXXXXXXXXXDRRSCGVGLPGGGAGFGEHDFVCTGCKMATKRAVRQYGLLGSLETGGVVLPYGESEGSGDETESDILPVTALPPRDSGAAASG-----GSGDAGGGQEDLVSAPGGAGLAGEPEGGHNIGDGAVG 426
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BLAST of mRNA_Ecto-sp13_S_contig7182.18299.1 vs. uniprot
Match: A0A7R9YEZ6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEZ6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.670e-8
Identity = 29/72 (40.28%), Postives = 38/72 (52.78%), Query Frame = 1 
Query:   94 RCKKVYHAYCMGFNVGDDELSSCPRHSCVECGEGAGYFCRFCPVSLCGTHFRTDPSGMIAETYESLKHRVRR 309
            RC KVYH YC+G++V D+E+  CP H C  C   +   CR+CP S C  H    PS  + E       R+ R
Sbjct:  606 RCLKVYHDYCLGYSVPDNEVWRCPSHHCEVCAGFSTLHCRYCPTSFCPEHM---PSEALLEEQRRCNSRLER 674
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BLAST of mRNA_Ecto-sp13_S_contig7182.18299.1 vs. uniprot
Match: H3H370_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H370_PHYRM)

HSP 1 Score: 63.5 bits (153), Expect = 4.150e-7
Identity = 25/51 (49.02%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:   91 TRCKKVYHAYCMGFNVGDDELSSCPRHSCVECGEGAGYFCRFCPVSLCGTH 243
            +RC KVYH  C+G+ V + +   CPRH C +CG  A Y CRFC  S C  H
Sbjct:  352 SRCPKVYHEDCLGYEVPEGKTWVCPRHRCQDCGIIAQYSCRFCVTSFCEDH 402
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BLAST of mRNA_Ecto-sp13_S_contig7182.18299.1 vs. uniprot
Match: A0A7S3H7L3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7L3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.700e-7
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   94 RCKKVYHAYCMGFNVGD-DELSSCPRHSCVECG-EGAGYFCRFCPVSLC 234
            RC KVYH YC+ F V + DE   CPRH C  CG +   Y C++CPVS+C
Sbjct:  150 RCLKVYHTYCLDFEVAENDEKWCCPRHYCDMCGIQNLKYICKYCPVSIC 198
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7182.18299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LIH8_ECTSI6.280e-17390.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J729_9PHAE9.350e-16889.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9YEZ6_9STRA4.670e-840.28Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
H3H370_PHYRM4.150e-749.02Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S3H7L3_9STRA4.700e-753.06Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7182contigEcto-sp13_S_contig7182:2140..4537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score68.2
Seed ortholog evalue1e-08
Seed eggNOG ortholog65071.PYU1_T006367
Model size1478
KEGG rclassRC00003,RC00060,RC00181,RC00496,RC01939
KEGG koko:K08964,ko:K11424,ko:K15588
KEGG ReactionR03875,R03938,R04866,R04867,R07392
KEGG Pathwayko00270,ko00310,ko01100,ko05202,map00270,map00310,map01100,map05202
KEGG ModuleM00034
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0008270,GO:0016829,GO:0016835,GO:0016836,GO:0043167,GO:0043169,GO:0046570,GO:0046872,GO:0046914
Exons3
EggNOG free text desc.histone-lysine N-methyltransferase activity
EggNOG OGs1MBMM@121069,COG2940@1,KOG1081@2759
EC2.1.1.43,4.2.1.109
Cds size1227
COG Functional cat.K
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463984.0761907-CDS-Ecto-sp13_S_contig7182:2139..23511681463984.0761907-CDS-Ecto-sp13_S_contig7182:2139..2351Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7182 2140..2351 +
1681463984.0899277-CDS-Ecto-sp13_S_contig7182:2669..32521681463984.0899277-CDS-Ecto-sp13_S_contig7182:2669..3252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7182 2670..3252 +
1681463984.1074042-CDS-Ecto-sp13_S_contig7182:3854..42861681463984.1074042-CDS-Ecto-sp13_S_contig7182:3854..4286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7182 3855..4286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463984.1191936-UTR-Ecto-sp13_S_contig7182:4286..45371681463984.1191936-UTR-Ecto-sp13_S_contig7182:4286..4537Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7182 4287..4537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7182.18299.1prot_Ecto-sp13_S_contig7182.18299.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7182 2140..4286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7182.18299.1

>prot_Ecto-sp13_S_contig7182.18299.1 ID=prot_Ecto-sp13_S_contig7182.18299.1|Name=mRNA_Ecto-sp13_S_contig7182.18299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=409bp
MEEPSNSSEAKGKAAEEGATGGASKAAAKPTRCKKVYHAYCMGFNVGDDE
LSSCPRHSCVECGEGAGYFCRFCPVSLCGTHFRTDPSGMIAETYESLKHR
VRRPFPRTRGGGFGPRSRTQAGGTGTVAGASSSSSSGGGAGSRGGRGKRG
RPGRGRRGRGGGRWSVGEAGGEATIAQRRPKRGQTATVAVPVPVLAPAVV
SVSGGGGGGDRRSCGVGLPGGGAGFGEHDFVCTGCKMAAKRAVRQYGLLG
SLETGGVVLPHGESEGSGDESESDILPVTALPPRDSGAAASGCGAGDGTG
DAGGGQEDLVSAPGGAGLAGEPEGGHNIGDAAVGGGAVVAGAAAAVSNAT
AAAAVAANNAAAAVAAEKYFSMFSRRDPPATPEVTTNGGDAGGGTAGGGG
GDGDVEMG*
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mRNA from alignment at Ecto-sp13_S_contig7182:2140..4537+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7182.18299.1 ID=mRNA_Ecto-sp13_S_contig7182.18299.1|Name=mRNA_Ecto-sp13_S_contig7182.18299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2398bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7182:2140..4537+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGAGCCGAGCAACAGCAGCGAAGCCAAGGGTAAGGCGGCGGAGGA
GGGGGCGACGGGAGGAGCCTCCAAGGCCGCGGCCAAGCCCACCCGCTGCA
AGAAGGTCTACCACGCCTACTGCATGGGATTCAACGTTGGGGACGACGAG
CTGAGCAGCTGCCCGAGGCACTCTTGCGTGGAGTGCGGAGAGGGTGCGGG
GTACTTCTGCAGGTGTGTGGGGTGGTGGTGGTGGTGTTGCGTACTGCTGC
ATGCGTAGCCGTGTGGCGTGGCGTGTGTGCGATGTGTGCGGTGTTGTCGT
CGTCGTTTTTATTTTTCTCTTTGTCACCACGTTTGTTGTGCTTTCCCGAC
GGTTTCACGCGCATCAGTGGTCTCCCCCCGCCCCCTCTTTTTGCGCGGGG
TCCTGAAATGGGTAGTTTCTATTGGACGCTTGTCTGTACCCTCGTCTTTT
AGACGATGTCATCCTACTGTATGCGATTGCCGCAAGCGATCGTTTGCCCC
ACCCCCCCCCTCCGTTTTTCGCTCATGAAGGTTCTGCCCGGTATCTCTCT
GCGGCACGCACTTCCGCACCGACCCTTCCGGCATGATCGCCGAGACCTAC
GAGTCCCTCAAGCACCGGGTCCGCCGGCCATTCCCCCGCACAAGGGGCGG
CGGCTTCGGCCCCAGATCACGCACCCAAGCCGGCGGCACCGGCACCGTCG
CCGGCGCCAGCAGCAGCAGCAGCAGCGGCGGTGGGGCGGGGAGCAGGGGT
GGGAGAGGCAAGCGTGGCCGCCCCGGCAGAGGACGTAGAGGGCGTGGCGG
CGGGAGGTGGTCCGTAGGGGAGGCCGGGGGGGAGGCGACTATCGCTCAGC
GCCGGCCGAAGCGCGGCCAAACGGCGACTGTAGCGGTGCCGGTGCCGGTG
CTGGCGCCGGCGGTGGTCAGCGTCAGCGGTGGCGGTGGGGGCGGGGACAG
GAGGTCGTGCGGCGTGGGGTTGCCGGGCGGGGGAGCCGGGTTCGGGGAGC
ACGACTTCGTGTGCACCGGGTGCAAGATGGCGGCGAAGCGGGCGGTGCGG
CAGTACGGGCTGCTGGGGTCGCTGGAGACTGGCGGCGTGGTCCTGCCGCA
CGGGGAGAGCGAGGTGTGGTTGAACGAGGGCGCCTGATGCTCGTGCCGGG
GTGTTGGTATCGCTGCGGCACTCGGGGGACGAGAGGGCGTTTGATATCGC
ACAACAGCAGTTATTGTTGTTGTTGGTGGTGGTGCGGGTCTTGTCGCGGT
CACGAGAGGTGCTGGGAGGTAGCAGGTGACGGTGGTCGGGTGCAGAGGGA
TGCCATGTGCCTTGGTATTGTTATTGTTGCCGTAGCATGGCGGTCTTGAT
TGTGTCGTGACGTGTGCAAATCACGGGGGCTTGGAGAGAGTGGTTTCGTG
GGTTGATCGACAAAAGGTGTTGGTCCACCCATGCGTGCGTGCAGGCTGGT
GTGCCCAACGTGCCAAATTTCGACGCGGAGCATAAAACAACCTTTCGTGG
CATGCCTAATACGCATTGATGTTTTTTCATCCCGCGAGCAACGTTCCAGC
TATTTCTACCCAACGATGTGCAATACGACCCCCCCGACCCTCGACAGATC
TCTCCCGCCATGCTTTTATGTCGCCACTATCGCCACCGCTTGACACCGAC
GTCGCCACCCACTCATCCATCCCGCCGTCGTTCTTCTCCCTCGCCTAACG
CCTGTGCTTACACAGGGGAGCGGCGACGAGAGCGAATCAGACATCCTACC
GGTCACCGCTCTGCCCCCACGAGACTCCGGCGCCGCAGCGAGCGGCTGCG
GCGCCGGCGACGGCACCGGCGATGCTGGAGGCGGACAGGAGGATCTCGTG
TCAGCCCCGGGCGGTGCAGGTCTTGCCGGAGAGCCGGAAGGCGGCCACAA
CATCGGCGATGCTGCCGTTGGTGGCGGCGCCGTTGTCGCCGGTGCTGCCG
CCGCCGTCAGCAACGCCACCGCCGCTGCGGCGGTGGCCGCCAACAACGCG
GCGGCGGCGGTCGCGGCGGAGAAGTACTTCTCCATGTTCTCGAGGCGAGA
CCCCCCGGCGACGCCAGAAGTAACAACAAACGGTGGCGATGCTGGTGGTG
GTACCGCGGGCGGCGGCGGGGGCGATGGCGACGTGGAAATGGGCTGACGA
GCACCCAGGAGAGATACCACGACCCAAGACAACCAACAGCAGCAGCAGTC
ACCGTAGAAGACAAGCAGCAGCAGCAGCAGCAGCCGCAGTAGAAGCAGTA
CTAGCGGCAGCAGCAGCAGTAGTATTCTAGCAGCATCGGGAGGGATTATT
AACCGTGCGATTGGAGAGTGTTTGGCGAAGGGTGCAGGCAGAGACGGAAA
ACGATGAAGGAAGCACGGGACACATGGGAAAGCATGATGGGTGGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7182:2140..4537+

>mRNA_Ecto-sp13_S_contig7182.18299.1 ID=mRNA_Ecto-sp13_S_contig7182.18299.1|Name=mRNA_Ecto-sp13_S_contig7182.18299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1227bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7182:2140..4537+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGAGCCGAGCAACAGCAGCGAAGCCAAGGGTAAGGCGGCGGAGGA
GGGGGCGACGGGAGGAGCCTCCAAGGCCGCGGCCAAGCCCACCCGCTGCA
AGAAGGTCTACCACGCCTACTGCATGGGATTCAACGTTGGGGACGACGAG
CTGAGCAGCTGCCCGAGGCACTCTTGCGTGGAGTGCGGAGAGGGTGCGGG
GTACTTCTGCAGGTTCTGCCCGGTATCTCTCTGCGGCACGCACTTCCGCA
CCGACCCTTCCGGCATGATCGCCGAGACCTACGAGTCCCTCAAGCACCGG
GTCCGCCGGCCATTCCCCCGCACAAGGGGCGGCGGCTTCGGCCCCAGATC
ACGCACCCAAGCCGGCGGCACCGGCACCGTCGCCGGCGCCAGCAGCAGCA
GCAGCAGCGGCGGTGGGGCGGGGAGCAGGGGTGGGAGAGGCAAGCGTGGC
CGCCCCGGCAGAGGACGTAGAGGGCGTGGCGGCGGGAGGTGGTCCGTAGG
GGAGGCCGGGGGGGAGGCGACTATCGCTCAGCGCCGGCCGAAGCGCGGCC
AAACGGCGACTGTAGCGGTGCCGGTGCCGGTGCTGGCGCCGGCGGTGGTC
AGCGTCAGCGGTGGCGGTGGGGGCGGGGACAGGAGGTCGTGCGGCGTGGG
GTTGCCGGGCGGGGGAGCCGGGTTCGGGGAGCACGACTTCGTGTGCACCG
GGTGCAAGATGGCGGCGAAGCGGGCGGTGCGGCAGTACGGGCTGCTGGGG
TCGCTGGAGACTGGCGGCGTGGTCCTGCCGCACGGGGAGAGCGAGGGGAG
CGGCGACGAGAGCGAATCAGACATCCTACCGGTCACCGCTCTGCCCCCAC
GAGACTCCGGCGCCGCAGCGAGCGGCTGCGGCGCCGGCGACGGCACCGGC
GATGCTGGAGGCGGACAGGAGGATCTCGTGTCAGCCCCGGGCGGTGCAGG
TCTTGCCGGAGAGCCGGAAGGCGGCCACAACATCGGCGATGCTGCCGTTG
GTGGCGGCGCCGTTGTCGCCGGTGCTGCCGCCGCCGTCAGCAACGCCACC
GCCGCTGCGGCGGTGGCCGCCAACAACGCGGCGGCGGCGGTCGCGGCGGA
GAAGTACTTCTCCATGTTCTCGAGGCGAGACCCCCCGGCGACGCCAGAAG
TAACAACAAACGGTGGCGATGCTGGTGGTGGTACCGCGGGCGGCGGCGGG
GGCGATGGCGACGTGGAAATGGGCTGA
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