mRNA_Ecto-sp13_S_contig7181.18298.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7181.18298.1
Unique NamemRNA_Ecto-sp13_S_contig7181.18298.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7181.18298.1 vs. uniprot
Match: D7G5X7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X7_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 4.350e-69
Identity = 122/159 (76.73%), Postives = 126/159 (79.25%), Query Frame = 1 
Query:    1 MDAVAALRFEGEGSAVSVVTD--------IRQSLDTHVEETEEDKKCGRCGPRR------TLSARSSTPANPFLFEYPLGKAAGGDRFTDKVRIYALDVCRTNDGERLNDSLVDLYLRSVGRRRLPLGDKHVERGKAVFGVPRGDASGSTRDPGGGAAS 435
            MDAVAALRFEGE SAV+VVT         IR+SLDTHVEETEE KK G  GPRR      TLSARSSTPANPFLFEYPLGKAAGGDRF DKVRIYALDVCRTNDGE LND+LVDLYLRS+      LGDKHVERGK VFGVPRGDA  STRD G GAAS
Sbjct:    1 MDAVAALRFEGEDSAVNVVTYMEGQLPVYIRRSLDTHVEETEEAKKDGHGGPRRVFRARRTLSARSSTPANPFLFEYPLGKAAGGDRFADKVRIYALDVCRTNDGELLNDNLVDLYLRSM------LGDKHVERGKGVFGVPRGDAGESTRDAGAGAAS 153
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BLAST of mRNA_Ecto-sp13_S_contig7181.18298.1 vs. uniprot
Match: D7FTK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK6_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 5.870e-27
Identity = 54/74 (72.97%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:  175 FLFEYPLGKAAGGDRFTDKVRIYALDVCRTNDGERLNDSLVDLYLRSVGRRRLPLGDKHVERGKAVFGVPRGDA 396
              F     +AAGGDRF DKVRIYALDVCRTNDGE LND+LVDLYLRS+      LGDKHVERG  VFGVPRGDA
Sbjct:   15 ITFHNTFRQAAGGDRFADKVRIYALDVCRTNDGELLNDNLVDLYLRSM------LGDKHVERGNGVFGVPRGDA 82
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BLAST of mRNA_Ecto-sp13_S_contig7181.18298.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.440e-7
Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:   64 IRQSLDTHVEETEEDKKCGRC-GPRRTLSARSSTPANP----FLFEYPLGKAAGGDRFTDKVRIYALDVCRTNDGERLNDSLVDLYLRSVGR 324
            +R +L+ H  ETEEDK+ GR    RRTL  RS    N      LF YP   +A     +D+V I +LD  RT +GE LND+LVDLYL+ + R
Sbjct:  240 LRLTLERHRRETEEDKEVGRSMRTRRTL--RSGGGGNDEFGKVLFHYPPEVSA-----SDRVAINSLDEARTQEGEFLNDNLVDLYLKHMHR 324
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BLAST of mRNA_Ecto-sp13_S_contig7181.18298.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 9.260e-7
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:   64 IRQSLDTHVEETEEDKKCGRC-GPRRTL-SARSSTPANP----FLFEYPLGKAAGGDRFTDKVRIYALDVCRTNDGERLNDSLVDLYLRSVGR 324
            +R +L+ H  ETEEDK+ GR    RR L + RS    N      LF YP   +A     +D+V I +LD  RT +GE LND+LVDLYL+ + R
Sbjct:  539 LRLTLERHRRETEEDKEVGRSMRTRRGLRTLRSGGGGNDEFGKVLFHYPPEVSA-----SDRVAINSLDEARTQEGEFLNDNLVDLYLKHMHR 626
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7181.18298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G5X7_ECTSI4.350e-6976.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTK6_ECTSI5.870e-2772.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDN6_ECTSI1.440e-745.65ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KTD8_9PHAE9.260e-744.09ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7181contigEcto-sp13_S_contig7181:2997..3920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score61.2
Seed ortholog evalue4.5e-07
Seed eggNOG ortholog2880.D8LDN6
Model size438
KEGG koko:K08596
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
Exons3
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0779@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009260.1
EC3.4.22.68
Cds size438
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463984.0282748-CDS-Ecto-sp13_S_contig7181:2996..31301681463984.0282748-CDS-Ecto-sp13_S_contig7181:2996..3130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7181 2997..3130 +
1681463984.0398285-CDS-Ecto-sp13_S_contig7181:3375..35751681463984.0398285-CDS-Ecto-sp13_S_contig7181:3375..3575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7181 3376..3575 +
1681463984.0490735-CDS-Ecto-sp13_S_contig7181:3816..39201681463984.0490735-CDS-Ecto-sp13_S_contig7181:3816..3920Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7181 3817..3920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7181.18298.1prot_Ecto-sp13_S_contig7181.18298.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7181 2997..3920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7181.18298.1

>prot_Ecto-sp13_S_contig7181.18298.1 ID=prot_Ecto-sp13_S_contig7181.18298.1|Name=mRNA_Ecto-sp13_S_contig7181.18298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MDAVAALRFEGEGSAVSVVTDIRQSLDTHVEETEEDKKCGRCGPRRTLSA
RSSTPANPFLFEYPLGKAAGGDRFTDKVRIYALDVCRTNDGERLNDSLVD
LYLRSVGRRRLPLGDKHVERGKAVFGVPRGDASGSTRDPGGGAASS
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mRNA from alignment at Ecto-sp13_S_contig7181:2997..3920+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7181.18298.1 ID=mRNA_Ecto-sp13_S_contig7181.18298.1|Name=mRNA_Ecto-sp13_S_contig7181.18298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7181:2997..3920+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCCGTTGCCGCCCTCCGATTTGAGGGGGAAGGTTCCGCCGTGAG
CGTCGTAACCGACATCAGGCAATCCCTGGATACGCACGTGGAGGAGACAG
AGGAGGACAAGAAGTGCGGCCGTTGTGGACCCAGGTGAGTGTGACGAGCA
AGGTATTATGTTCATGTAATTGGGGCTGTTTCGACACTGACGTCGTCGTC
CTAATCGTAGCTGGCGTTATCTACAAAACTGTGGCCCTTAGTCGGTGGTG
GTGTGGCTACTGTCTGGGTCGTACGGCATTGCTGTAGTGGACTAGGGCCA
TCCCTAGTGTGCATGTCGGCGGATATGCTAGTGTTCAACCGCCCGTTTCA
CCAACCGTAGCACGCTGATAACGTCGCAGGAGGACGCTTAGTGCACGTTC
ATCTACACCAGCTAACCCGTTCTTGTTCGAATATCCGCTTGGCAAGGCGG
CGGGGGGGGACAGGTTCACGGACAAGGTCCGGATATACGCACTGGACGTG
TGCCGCACCAATGACGGTGAACGTTTGAACGACAGTCTCGTCGATCTGTA
CCTCAGGTCAGTGGGCCGGAGGAGGCTACGTCGAGTCCTGCTATATATTT
AGCGGTATCCTAGACCTAATCCTGCAACCACAATGACGACGATAAACCGT
AAACGTGGGGGTACCTCGGTACCACTTTGCTGCTGGCATGGCGGACTCAC
ACAGCAGAAACCCGACTCAATGTCATCGTGCTGTAGGTCATCTTGATGTT
TCGGAATCACACTAACCGACATCCTATTACCGCACCATCCGCACGAATGT
CTGCCTTCTCATGGCAGGAGCGCTCGGAGACAAGCATGTGGAGAGGGGAA
AAGCTGTCTTCGGCGTTCCACGCGGCGATGCCAGCGGGAGTACCCGTGAT
CCCGGCGGTGGAGCCGCAAGCAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7181:2997..3920+

>mRNA_Ecto-sp13_S_contig7181.18298.1 ID=mRNA_Ecto-sp13_S_contig7181.18298.1|Name=mRNA_Ecto-sp13_S_contig7181.18298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7181:2997..3920+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCCGTTGCCGCCCTCCGATTTGAGGGGGAAGGTTCCGCCGTGAG
CGTCGTAACCGACATCAGGCAATCCCTGGATACGCACGTGGAGGAGACAG
AGGAGGACAAGAAGTGCGGCCGTTGTGGACCCAGGAGGACGCTTAGTGCA
CGTTCATCTACACCAGCTAACCCGTTCTTGTTCGAATATCCGCTTGGCAA
GGCGGCGGGGGGGGACAGGTTCACGGACAAGGTCCGGATATACGCACTGG
ACGTGTGCCGCACCAATGACGGTGAACGTTTGAACGACAGTCTCGTCGAT
CTGTACCTCAGGTCAGTGGGCCGGAGGAGGCTACCGCTCGGAGACAAGCA
TGTGGAGAGGGGAAAAGCTGTCTTCGGCGTTCCACGCGGCGATGCCAGCG
GGAGTACCCGTGATCCCGGCGGTGGAGCCGCAAGCAGT
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