mRNA_Ecto-sp13_S_contig7180.18297.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7180.18297.1 vs. uniprot
Match: D7G6L1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L1_ECTSI) HSP 1 Score: 249 bits (635), Expect = 2.120e-75 Identity = 202/353 (57.22%), Postives = 214/353 (60.62%), Query Frame = 1
Query: 1 GVRDVLDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSRNDSDESVACVDPPTLPDKQRKGGHPTRKGQRSTSPRAGAAGSPVDLLREQRGEGGATRKKASKGALGDPLDVDSGWSEQPAPEGKKKASVKTRRPLGKKRHPRLRTPTGRRRYPSPXXXXXXXXXXXXPTRCGRPGGR*L----------LSRGRSLPRCRSRHALTGSRSATPPSLPPMRCLGRGCGRLSWPRKALRKKAEVKSAAVAARKVRA----PALTAALRSNDKNVKAPPGTKKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLDSSKNDQASKDPVSASPPNKSGREEKKTRDDTTST 1017
GVRDV DS XXXXXXXXXXXCSR+DSD+SVACVDPPTL DKQRKGG PTRKGQRSTSPRAGAAG PVDL REQRGE GATRKKASKGA GDPLDVDSG SEQPAP GKKKASVKTR+ G S TR R R + +S+ R + R A + + + L RG GRLSWPRKALRKK E KSA VAA+K R PA TAA R+NDKNVKAPPGTKK XXXXXXXXXX NLD SKNDQASK PVSASP NKSGREEKKTRDDTTST
Sbjct: 50 GVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRK-AGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNES---------LRRGRGRLSWPRKALRKKGEAKSATVAAQKARTTKETPAPTAARRNNDKNVKAPPGTKKPAATLGQSAAKSKKILNKXXXXXXXXXXRAAPAAANLDPSKNDQASKGPVSASPSNKSGREEKKTRDDTTST 392
BLAST of mRNA_Ecto-sp13_S_contig7180.18297.1 vs. uniprot
Match: A0A6H5JEG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG3_9PHAE) HSP 1 Score: 176 bits (445), Expect = 9.610e-49 Identity = 137/297 (46.13%), Postives = 150/297 (50.51%), Query Frame = 1
Query: 112 CSRNDSDESVACVDPPTLPDKQRKGGHPTRKGQRSTSPRAGAAGSPVDLLREQRGEGGATRKKASKGALGDPLDVDSGWSEQPAPEGKKKASVKTRRPLGKKRHPRLRTPTGRRRYPSPXXXXXXXXXXXXPTRCGRPGGR*LLSRGRSLPRCRSRHALTGSRSATPPSLPPMRCLGRGCGRLSWPRKA-------------------LRKKAEVKSAAVAARKVRA----PALTAALRSNDKNVKAPPGTKKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLDSSKNDQ 933
CSR+DS++SVAC DPPTLPD QRKGG PTRKGQRSTSPRAGAAG PVDL REQRGE GATRKKAS+GA GDPLDVDS EQPAP+GKKKASVKTR GKK + P X L S R +P + + S+S + +S RK+ RKK E KSAAVAARK R PALTAALR NDKNVKAP GTKK NLD SKNDQ
Sbjct: 63 CSRDDSNDSVACADPPTLPDNQRKGGRPTRKGQRSTSPRAGAAGPPVDLAREQRGEEGATRKKASRGASGDPLDVDSVGPEQPAPKGKKKASVKTRNACGKK----VSEPVSEXXXXXXXDTTHT-----------------LRSARRKVPPEQRKKLTEMSKSTCSDQIKERDAAFAAHNEVSKKRKSNIGVLELPARVDAKEAKLLKRKKGEAKSAAVAARKARTTKETPALTAALRYNDKNVKAPFGTKKPAATLDPSAAKSKKRLNKALPGTKKSAERAAPAAANLDPSKNDQ 338
BLAST of mRNA_Ecto-sp13_S_contig7180.18297.1 vs. uniprot
Match: D7G601_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G601_ECTSI) HSP 1 Score: 166 bits (420), Expect = 3.090e-45 Identity = 104/134 (77.61%), Postives = 107/134 (79.85%), Query Frame = 1
Query: 1 GVRDVLDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSRNDSDESVACVDPPTLPDKQRKGGHPTRKGQRSTSPRAGAAGSPVDLLREQRGEGGATRKKASKGALGDPLDVDSGWSEQPAPEGKKKASVKTRR 402
GVRDV DS XXXXXXXXXXXCSR+DSD+SVACVDPPTL DKQRKGG PTRKGQRSTSPRAGAAG PVDL REQRGE GATRKKASKGA GDPLDVDSG SEQPAP GKKKASVKTR+
Sbjct: 91 GVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRK 224
BLAST of mRNA_Ecto-sp13_S_contig7180.18297.1 vs. uniprot
Match: A0A6H5JUG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG3_9PHAE) HSP 1 Score: 165 bits (417), Expect = 3.830e-43 Identity = 91/134 (67.91%), Postives = 98/134 (73.13%), Query Frame = 1
Query: 1 GVRDVLDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSRNDSDESVACVDPPTLPDKQRKGGHPTRKGQRSTSPRAGAAGSPVDLLREQRGEGGATRKKASKGALGDPLDVDSGWSEQPAPEGKKKASVKTRR 402
GVRDVLDDS CSR+DSD+SVAC+ PPTLPDK RKGG PTRKGQR TSPRAGAAGSPVDL+ EQRGE GATRKKASKGA GDPLDVDSG SEQPAP+GK+KASVKTR+
Sbjct: 26 GVRDVLDDSDDGINDNRPIHRVGDTDDEGDDEDGANGCSRDDSDDSVACMHPPTLPDKPRKGGRPTRKGQRPTSPRAGAAGSPVDLVTEQRGEEGATRKKASKGASGDPLDVDSGGSEQPAPKGKQKASVKTRK 159
BLAST of mRNA_Ecto-sp13_S_contig7180.18297.1 vs. uniprot
Match: D7FHM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM3_ECTSI) HSP 1 Score: 111 bits (278), Expect = 9.130e-24 Identity = 104/216 (48.15%), Postives = 118/216 (54.63%), Query Frame = 1
Query: 163 LPDKQRKGGHPTRKGQRSTSPRAGAAGSPVDLLREQRGEGGATRKKASKGALGDPLDVDSGWSEQPAPEGKKKASVKTRRPLGKKRHPRLRTPTGRRRYPSPXXXXXXXXXXXXPTRCGRPGGR*LLSRGRSLPRCRSRHALTGSRSATPPSLPPMRCLGRGCGRLSWPRKAL---RKKAEVKSAAVAARKVRAPALTAALRSNDKNVKAPPGTKK 801
+ D+ RKGG PTRK QRST P AGA GS VDL EQRGE G RKKASKGA GDPLDVDSG SEQ AP+G+KKASVKTR G XXXXXXXXX + + S R + + + S+S P + +S R+A RKK E KSAAVAARK PA TAAL ND NVKA P K+
Sbjct: 75 IDDQMRKGGRPTRKRQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASGDPLDVDSGASEQSAPKGRKKASVKTRE-------------AGXXXXXXXXXXXXXXXXKVSESESESDTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNAALAAADEVSRKREAKLLKRKKGEAKSAAVAARKG-TPAPTAALHKNDNNVKAGPSNKQ 276
BLAST of mRNA_Ecto-sp13_S_contig7180.18297.1 vs. uniprot
Match: D7FL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL21_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 9.940e-9 Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 2
Query: 2 ESATSLMTQTTTLTTTVPSAKLGTRTMKATARMGRTAAAATTLTKASH 145
ESATSL+ +TTTLTTT PS KLGTR M ATARMGRTAAAATTLT ASH
Sbjct: 2 ESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASH 49
BLAST of mRNA_Ecto-sp13_S_contig7180.18297.1 vs. uniprot
Match: D7FUP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP6_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 4.460e-8 Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 2
Query: 908 TWTQARTIRLVRILCRRARPTSLDARKRRRVMTRLP 1015
TWT ARTIRLVRILCRRAR TSLDARKRRRVMTRLP
Sbjct: 91 TWTHARTIRLVRILCRRARRTSLDARKRRRVMTRLP 126 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7180.18297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7180.18297.1 >prot_Ecto-sp13_S_contig7180.18297.1 ID=prot_Ecto-sp13_S_contig7180.18297.1|Name=mRNA_Ecto-sp13_S_contig7180.18297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp MRCLGRGCGRLSWPRKALRKKAEVKSAAVAARKVRAPALTAALRSNDKNVback to top mRNA from alignment at Ecto-sp13_S_contig7180:3961..7265+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7180.18297.1 ID=mRNA_Ecto-sp13_S_contig7180.18297.1|Name=mRNA_Ecto-sp13_S_contig7180.18297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3305bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7180:3961..7265+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7180:3961..7265+ >mRNA_Ecto-sp13_S_contig7180.18297.1 ID=mRNA_Ecto-sp13_S_contig7180.18297.1|Name=mRNA_Ecto-sp13_S_contig7180.18297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7180:3961..7265+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |