mRNA_Ecto-sp13_S_contig718.18295.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig718.18295.1
Unique NamemRNA_Ecto-sp13_S_contig718.18295.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig718.18295.1 vs. uniprot
Match: A0A6H5KJM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM1_9PHAE)

HSP 1 Score: 618 bits (1593), Expect = 9.290e-217
Identity = 431/471 (91.51%), Postives = 438/471 (92.99%), Query Frame = 2 
Query:  119 MDLPSSATMGDACFSPSSGGDGKRKRNRKAKKFADYVAWEEEAPTEREEEPTEDGQHHNKRNRKGKSTATQQTPQQSSPFGATPVASSSPSDTAPATGSHDTIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGRAVSLGSISKRIKTSQAELTGLNERINVLKAEAAKADPEPQQVLEILQHLMKQDKSLEEDPFYSVAYKATCTAATKAAKXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXEEAARMGKEQESSPAVLQPRTGTVEGQEEAKAVNAREAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGATSGTGAVSALPTSTLSPAAPAPSPPPALATAIAEPPNPFVGELGGLVVSNTTVAPCSIPPAPXXXXGGPP 1531
            MD+PSS T+GDACFSP++GGDGKRKRNRKAKKFADYVAWEEEA TEREE PT+DGQHHNKRNRKGKSTATQQTP QSSPF ATPVAS SPSDTAPAT SHDTIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGR VSLGSISKRIKTSQAELTGLNERINVLKAEAAKADPEPQQVLEILQHLMKQDKSLEEDPFYSVAYKATCTAATKAAKXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXX  AAR GKEQESS AVLQPRT  VEGQEEAKAV+AREAAAA XXXXXXXXXXXXXXXXXXXXXXXXXXXX                SGATSGTGAVSALPTSTLSPAAPAPSPPPALATAIAEPPNPFVGELGGLVVS+T VAPCSIPPAPXXXXGGPP
Sbjct:    1 MDVPSSTTVGDACFSPTTGGDGKRKRNRKAKKFADYVAWEEEATTEREE-PTDDGQHHNKRNRKGKSTATQQTPNQSSPFAATPVASPSPSDTAPATDSHDTIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGRPVSLGSISKRIKTSQAELTGLNERINVLKAEAAKADPEPQQVLEILQHLMKQDKSLEEDPFYSVAYKATCTAATKAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRGKEQESSAAVLQPRTDMVEGQEEAKAVHAREAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXALHTTASLTSG-----SGATSGTGAVSALPTSTLSPAAPAPSPPPALATAIAEPPNPFVGELGGLVVSSTNVAPCSIPPAPXXXXGGPP 465
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BLAST of mRNA_Ecto-sp13_S_contig718.18295.1 vs. uniprot
Match: D7FN54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN54_ECTSI)

HSP 1 Score: 405 bits (1041), Expect = 4.460e-136
Identity = 218/233 (93.56%), Postives = 221/233 (94.85%), Query Frame = 2 
Query:  119 MDLPSSATMGDACFSPSSGGDGKRKRNRKAKKFADYVAWEEEAPTEREEEPTEDGQHHNKRNRKGKSTATQQTPQQSSPFGATPVASSSPSDTAPATGSHDTIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGRAVSLGSISKRIKTSQAELTGLNERINVLKAEAAKADP 817
            MD+PSS TMGDACFSPS+GGDGKRKRNRKAKKFADYVAWEEEA TEREEEPTEDGQHHNKRNRKGKSTATQQTP QSSPF ATPVAS SPSDTAPATGSHDTIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGR VSLGSISKRIKTSQAELTGLNERINVLK    +  P
Sbjct:    1 MDVPSSTTMGDACFSPSTGGDGKRKRNRKAKKFADYVAWEEEATTEREEEPTEDGQHHNKRNRKGKSTATQQTPHQSSPFAATPVASPSPSDTAPATGSHDTIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGRPVSLGSISKRIKTSQAELTGLNERINVLKISPVREQP 233
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig718.18295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJM1_9PHAE9.290e-21791.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN54_ECTSI4.460e-13693.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig718contigEcto-sp13_S_contig718:4729..8886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1703
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_008440.1
Cds size1416
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig718.18295.1prot_Ecto-sp13_S_contig718.18295.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig718 4898..8768 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463983.6478481-UTR-Ecto-sp13_S_contig718:4728..48971681463983.6478481-UTR-Ecto-sp13_S_contig718:4728..4897Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig718 4729..4897 -
1681463983.7245643-UTR-Ecto-sp13_S_contig718:8768..88861681463983.7245643-UTR-Ecto-sp13_S_contig718:8768..8886Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig718 8769..8886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463983.663697-CDS-Ecto-sp13_S_contig718:4897..56381681463983.663697-CDS-Ecto-sp13_S_contig718:4897..5638Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig718 4898..5638 -
1681463983.6909652-CDS-Ecto-sp13_S_contig718:6422..65901681463983.6909652-CDS-Ecto-sp13_S_contig718:6422..6590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig718 6423..6590 -
1681463983.703887-CDS-Ecto-sp13_S_contig718:7133..76061681463983.703887-CDS-Ecto-sp13_S_contig718:7133..7606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig718 7134..7606 -
1681463983.7147894-CDS-Ecto-sp13_S_contig718:8734..87681681463983.7147894-CDS-Ecto-sp13_S_contig718:8734..8768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig718 8735..8768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig718.18295.1

>prot_Ecto-sp13_S_contig718.18295.1 ID=prot_Ecto-sp13_S_contig718.18295.1|Name=mRNA_Ecto-sp13_S_contig718.18295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=472bp
MDLPSSATMGDACFSPSSGGDGKRKRNRKAKKFADYVAWEEEAPTEREEE
PTEDGQHHNKRNRKGKSTATQQTPQQSSPFGATPVASSSPSDTAPATGSH
DTIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVME
ALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGRAVSL
GSISKRIKTSQAELTGLNERINVLKAEAAKADPEPQQVLEILQHLMKQDK
SLEEDPFYSVAYKATCTAATKAAKAAAAAARATAAAQARKKAAENAVAVA
ASAAAAEATRQAEEAARMGKEQESSPAVLQPRTGTVEGQEEAKAVNAREA
AAAAAAAAAATVAAATAAAATASAATAASAAAATAAVASHTTASLTSSSG
ATSGTGAVSALPTSTLSPAAPAPSPPPALATAIAEPPNPFVGELGGLVVS
NTTVAPCSIPPAPPAPPGGPP*
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mRNA from alignment at Ecto-sp13_S_contig718:4729..8886-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig718.18295.1 ID=mRNA_Ecto-sp13_S_contig718.18295.1|Name=mRNA_Ecto-sp13_S_contig718.18295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4158bp|location=Sequence derived from alignment at Ecto-sp13_S_contig718:4729..8886- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCCGGCAGGCAGAGACCGAGATCGGAACCAGGGGGAGGTCAAATTAA
TATTTGCCGACCCCCTCCCGTCACACCCTTGGACGGGCACACACCTTCTC
CAGCCACGAGCAGCGATCATGGACTTGCCTTCTTCCGCTACTATGGGCGA
CGGTAAGGGCCTGCCTTGATATCGAAGTGGTAGCCAGCAGAGGCCGTTGG
TATGAGTATGAGGATGCATGGGAACCGTAGGTATTTTGTGTTTTGGCGAA
GATGCCCTCGATGTTTTAGTTGACCCGACCTCCGATGGGGCTGTTGAAAA
AGTATGCACGCACCACCTACAGAGCCGCAAGCCAAGCGGTACGTTTCCTC
TATTTCATTATGTCTCCATGTAACAACGAAAATATCATGGCCGTATCCTC
ACCAGCGATCGAAGTGGCGAAGTCACAAGTTGCACCGCTGCTGTGCACAA
GCCCAATCTACGATGTTAACGTAATATGCATACCGCGCGTTGATGGCCGA
CATGAATACGCTCCTTCATTATCTGGCCCACTAGAGATTTCACGAAGCGC
CATGGGTGTCGAGCCCGATGAGGAATACGAAGGATGGGTGAAGACACATC
GATTTCAAGTTTTCGCATCACAATGGCCGTCATTATATGTCATCCGATGC
CCAGCAAGCACGATCACGTTCAATATCTTGCAAGTAGCAGTGTGGTATGA
CTTTTGGTCGGGTTGTTTTTGTTGGTGTTTGTGTTGGGTTGTGTTGGGGT
TAGGGGTAGGGTTACATCCTAGGTGAGAGGGTTACATCCTAGGTGAGAAG
CGGTGCGGAAAAAATGTACATCAGCAGGTCGGGTTCGATCCAGGGACCAG
GGGTTTCGGACGGAAGTTTGCGATCCATCGGGGTAAATTTCATCACCGAC
CGCACCCCGGCAGTGCCTAGGGCTACATACTGGAAGGCTAGAGGTTGTGT
ACAGGTTCCACAGGAAGATTCCCGTCAACCATTGTGTTCGACCAAGTCGT
GCGCACCCGTCACGAGAGATCCACCAGTTGTCGTTGGGGTTAAGAAAAGT
AGGACAGTGCAACTCATCGCGCCCTTGGTGTTGTGTGGAAACTTCGATTT
TTGGTGCCAAGACCCCACGCCCGGCGAGTAAAGGCCGTCTCGACCGTGAT
ATCGGGGAGTTTGTCACCCAATGAACTTCTTGCGGTCCGATTGTGAGGCT
TCGAAACCTGTAGCAGTGGCGTTTGTACCTGGGGCCCATCCTCCCTCACA
TGAACGTTCCCTGTTTTGCTCCAACCACAGCCTGCTTCTCCCCCTCCTCT
GGGGGTGACGGCAAACGCAAACGAAATCGCAAGGCCAAGAAGTTTGCTGA
CTACGTCGCTTGGGAGGAGGAGGCGCCCACCGAAAGGGAGGAAGAGCCGA
CGGAAGACGGACAACACCACAACAAACGCAATCGCAAGGGCAAGTCAACA
GCAACGCAGCAAACGCCGCAGCAAAGCAGCCCTTTTGGTGCCACTCCTGT
CGCTAGTTCATCACCTTCTGACACTGCTCCTGCTACCGGTAGTCACGATA
CCATTGTGTCCGTTAAGAAGGTGGCAGGCGTTCAGAACGCCACCCGCAAG
GCCCTTGAATGGTTGCAGTACGGAGATATGTCCCTCGTGGAGCTGGGTCA
GAGCCTGCCGAAGCTTTCCAAAGCTCGCGTGGAGGTTGTCATGGAGGCTC
TTCGAGCTGCTGGGCTCGTAACGCTGGTCAGGAAGCACGCGCCCAACGCA
ATGGTGAGAATAGTGACCGCTCATGAGCCCGAAATTACTCGCTGATGAAT
TGTGCCGGTTTTTTGTTTGGTACATCTGTGCGGTGCCTTTTCGCTTCTCG
CTCCCGCCGTCGTGTTTGCTTGACGAATCGAAAGAAGCTGAACCGTAACG
AAGGCACCCCATCGTTGCTGCTGTGGAGGGGACTCAGACCGCTTCCACCT
CCAGACGCCAGGGGATATGCGGAGGACGCTTCAAAGCACCTTTCGAAACA
GCAATTGTTTGGTATTTTTGATGGGGTGAAGTAGGTCATAAGGGAGCGCC
AACAATCTTCTGGGAGTGCTGAAGAGGAAGTACGGGATACAAAGTCATGA
AGCTTCTGAGTCTCAAGACGCCGACAAACCGTGCGACGATACACGATCAT
GTTGCTGATTTATGTGGTATGGCGTAGATGGCATGGAGTCATGCTCGTTC
TCTTCCCGTTAGGTATTTGGTTTGTGGGCGCGCTAAGCGAGGCAGAGCAT
AAACGATTATGCCACCCGTACCACATTGCCGTTGTCTGGACCGCAGGGAG
AGGATCACGTAACCGAGGTGTATCGTTTCTCCGCCGGCCGATCTCCAGCA
ACGGCGCTTGAGATCGGAGGGGGGAGGGCTGTCTCTCTTGGGTCCATCTC
GAAGCGCATTAAGACCTCGCAGGCGGAACTAACCGGGCTTAACGAACGAA
TCAACGTGCTGAAGGTGATGGGTGCTGAAATATGGCCCAAAGGGGCCTGT
TAAGCGTCTTGGGATTGGAAGACGAGAGAAGGGTCTTGCAGTAGTGCCCA
CGGGAAGTAAGAGGGGCGAAATTTCTCGCTTCCGCTGGCCTTGTGGCGTG
TCTCGAGAGTATTCGTACTGCGATTTTCAGAGGGAAGGGATTGCTGTACC
CTTCTCGCGATCAAAATATCTCAGGCAGGCACCGCAGGAGGTAGGTGGGG
ACAAAAAAAGATAACAAGAACAAGAACAAACGGCGTAGGTACCCCCTCCT
GTATGACCCCGGACGGTGCGTCTAGCTAGATGTTGTGTACCAAGTACGCT
GAGAGTGTATGTGCATATACGCGGCAAAACGTGTAGTGCGCATCGAAGAG
GACTTAGCAGGCGCGCCAGAGATGGGACCAAAAAAAGAAGAAGAAAAACA
AGTATTGTAGGAGGTATCCGGGTTGAGCTCGCATTGCCGATGGCCGGGGT
CCAGCTAGCGTGCTGTGCACCCACTTCGATGTCTATCATCCCACCCACCG
AGCTAGTTTAAACATGCGCAATAAGGTGCCATGTATCATGATGATATCTG
GAATAGTGCGTCCAAGCAACTAGCGTGTCCATACTCGAGGTAGCTTTGCC
ACCGCGGGGTAGAGCCCACGAAACCACCATCTTGCCGTGTCCTCCTCATC
GTCCGAACCACTTGCGCACACCCCCTGCACCTTGTCGCACTCTCCAATGC
TACTCTACTCTGTTGTTGCGCTGCTTTTCGCATACTACGACGGCATAGGC
GGAAGCCGCCAAGGCGGATCCAGAGCCGCAGCAAGTCCTGGAAATCTTGC
AGCACTTGATGAAGCAGGACAAGAGCCTGGAGGAAGACCCCTTCTACAGC
GTTGCGTACAAGGCGACTTGCACGGCCGCCACCAAGGCAGCCAAGGCCGC
AGCGGCAGCCGCTAGGGCCACAGCAGCAGCCCAGGCGAGAAAAAAGGCGG
CGGAAAATGCGGTGGCGGTGGCGGCGTCAGCTGCAGCAGCCGAGGCGACG
AGACAAGCTGAAGAAGCGGCGAGAATGGGGAAAGAGCAAGAGTCTTCACC
GGCGGTGCTGCAGCCGAGGACGGGCACGGTGGAGGGGCAAGAAGAGGCCA
AGGCTGTCAACGCTAGAGAAGCCGCCGCTGCTGCGGCCGCCGCTGCTGCG
GCTACCGTTGCTGCGGCTACTGCTGCTGCGGCCACTGCCAGTGCGGCTAC
AGCTGCTTCGGCTGCCGCTGCTACCGCTGCTGTTGCTTCACACACTACAG
CCTCCCTCACGTCCAGTTCCGGGGCAACCTCCGGTACCGGTGCTGTCAGC
GCATTACCAACGTCCACCCTTTCGCCCGCTGCACCTGCGCCTTCTCCTCC
TCCGGCCTTGGCGACGGCCATTGCAGAGCCGCCCAATCCGTTCGTGGGCG
AGCTTGGGGGCTTGGTGGTGTCGAATACCACTGTTGCACCCTGTTCGATT
CCACCGGCGCCACCTGCACCACCTGGCGGACCGCCGTAGTTGTATTATTT
CAGTCGTAGCGCGCTGGCGGCAAGAGATGGTGGCCTCATCGCCAGAGCAT
GAGGAAAGCAAGCAGCATACCTTGTTTTTTCGCTGCACGCTCGTGGGTTT
GGTACCCGTGCTGGTACTTTGAGGAATTTCGAAGCTGGATCGCCGAAACA
AGCGTTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig718:4729..8886-

>mRNA_Ecto-sp13_S_contig718.18295.1 ID=mRNA_Ecto-sp13_S_contig718.18295.1|Name=mRNA_Ecto-sp13_S_contig718.18295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1416bp|location=Sequence derived from alignment at Ecto-sp13_S_contig718:4729..8886- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTTGCCTTCTTCCGCTACTATGGGCGACGCCTGCTTCTCCCCCTC
CTCTGGGGGTGACGGCAAACGCAAACGAAATCGCAAGGCCAAGAAGTTTG
CTGACTACGTCGCTTGGGAGGAGGAGGCGCCCACCGAAAGGGAGGAAGAG
CCGACGGAAGACGGACAACACCACAACAAACGCAATCGCAAGGGCAAGTC
AACAGCAACGCAGCAAACGCCGCAGCAAAGCAGCCCTTTTGGTGCCACTC
CTGTCGCTAGTTCATCACCTTCTGACACTGCTCCTGCTACCGGTAGTCAC
GATACCATTGTGTCCGTTAAGAAGGTGGCAGGCGTTCAGAACGCCACCCG
CAAGGCCCTTGAATGGTTGCAGTACGGAGATATGTCCCTCGTGGAGCTGG
GTCAGAGCCTGCCGAAGCTTTCCAAAGCTCGCGTGGAGGTTGTCATGGAG
GCTCTTCGAGCTGCTGGGCTCGTAACGCTGGTCAGGAAGCACGCGCCCAA
CGCAATGGGAGAGGATCACGTAACCGAGGTGTATCGTTTCTCCGCCGGCC
GATCTCCAGCAACGGCGCTTGAGATCGGAGGGGGGAGGGCTGTCTCTCTT
GGGTCCATCTCGAAGCGCATTAAGACCTCGCAGGCGGAACTAACCGGGCT
TAACGAACGAATCAACGTGCTGAAGGCGGAAGCCGCCAAGGCGGATCCAG
AGCCGCAGCAAGTCCTGGAAATCTTGCAGCACTTGATGAAGCAGGACAAG
AGCCTGGAGGAAGACCCCTTCTACAGCGTTGCGTACAAGGCGACTTGCAC
GGCCGCCACCAAGGCAGCCAAGGCCGCAGCGGCAGCCGCTAGGGCCACAG
CAGCAGCCCAGGCGAGAAAAAAGGCGGCGGAAAATGCGGTGGCGGTGGCG
GCGTCAGCTGCAGCAGCCGAGGCGACGAGACAAGCTGAAGAAGCGGCGAG
AATGGGGAAAGAGCAAGAGTCTTCACCGGCGGTGCTGCAGCCGAGGACGG
GCACGGTGGAGGGGCAAGAAGAGGCCAAGGCTGTCAACGCTAGAGAAGCC
GCCGCTGCTGCGGCCGCCGCTGCTGCGGCTACCGTTGCTGCGGCTACTGC
TGCTGCGGCCACTGCCAGTGCGGCTACAGCTGCTTCGGCTGCCGCTGCTA
CCGCTGCTGTTGCTTCACACACTACAGCCTCCCTCACGTCCAGTTCCGGG
GCAACCTCCGGTACCGGTGCTGTCAGCGCATTACCAACGTCCACCCTTTC
GCCCGCTGCACCTGCGCCTTCTCCTCCTCCGGCCTTGGCGACGGCCATTG
CAGAGCCGCCCAATCCGTTCGTGGGCGAGCTTGGGGGCTTGGTGGTGTCG
AATACCACTGTTGCACCCTGTTCGATTCCACCGGCGCCACCTGCACCACC
TGGCGGACCGCCGTAG
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