mRNA_Ecto-sp13_S_contig718.18294.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig718.18294.1
Unique NamemRNA_Ecto-sp13_S_contig718.18294.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: D7FN53_ECTSI (PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN53_ECTSI)

HSP 1 Score: 868 bits (2244), Expect = 5.450e-303
Identity = 587/649 (90.45%), Postives = 595/649 (91.68%), Query Frame = 1
Query:    1 RFRSSDKKPTTNAAPGGAIKPRSRVPRLDPVQIQALTAAAAVAKKSARQPKSEENVEGKESGSKAAXXXXXXXXXXDGKTLSGFVKEGAGSRGGSGNKTANKREAAEMLGPDATEQLAAATAKVFLEKRTXXXXXXXXXXXXXXXXXXXXXXXXRVSDDGDGEDASLSAGKDVEAGDSWEKAGGRQDESKRKACAVEGDDEGGKGYGGKRTAGAGGGSVGEEVPVDGVVTRRGGLRSGSRGGGKDFPPENKTKGXXXXXXXXXXEDGVEVVEGEGPSTSQEIGE-KVEEAAQCDGTTGNAEEGEQAENGENDGETXXXXXXXXXXXXXXXXXXXXXXLEAGDEVDDRSKGRXXXXXXXKSGEGKASDGAEGXTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--EERVDVGAWAAAGPVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLVSSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTTSALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSFLSGEHHIEK 1938
            RFRSSDKKPTTNAAPGGAIKPRSRVPRLDPVQIQALTAAAAVAKKS RQPKSEENVEGKESGS+A           DGKTLSGFVKEGAGS GGSGNKTANKREAAEMLGPDATEQLAAATAKVFLEKR XXXXXXXXXXXXXXXXXXXXXXXXRVSDDGDGEDASLSAGKDVEAGDS EKAG RQDESKRKACAVEGD+EG KG G KRTAGAGGGSVGEE PV+GVVTRRGGLRSGS GGGKDFPPE+KTK    XXXXXXX  GVEV EGE PS SQE GE KVEEAAQCDG TGNAEEG+QAEN ENDGETXXXXXXXXXXXXXXXXXXXX  LEAGDEVDD     XXX    K GEG+A DGAEG T  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  EERVDVGAWAAAGPVARSPIVMVRHVDTLEVSPGAFC LFGLYGDVMKVKLV+SRGMALVQMRYPVQAANAQRLLDQTPLSGMT+EVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDT SALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSFLSGEHHIEK
Sbjct:  275 RFRSSDKKPTTNAAPGGAIKPRSRVPRLDPVQIQALTAAAAVAKKSVRQPKSEENVEGKESGSEATVVAGRGGGGGDGKTLSGFVKEGAGSSGGSGNKTANKREAAEMLGPDATEQLAAATAKVFLEKRXXXXXXXXXXXXXXXXXXXXXXXXXRVSDDGDGEDASLSAGKDVEAGDSSEKAGSRQDESKRKACAVEGDNEGEKGSG-KRTAGAGGGSVGEEAPVEGVVTRRGGLRSGSTGGGKDFPPEDKTKAEDVXXXXXXXXXGVEVAEGEDPSKSQETGEEKVEEAAQCDGPTGNAEEGKQAENVENDGETXXXXXXXXXXXXXXXXXXXXK-LEAGDEVDDXXXXXXXXEGGEKQGEGEAGDGAEGETKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERVDVGAWAAAGPVARSPIVMVRHVDTLEVSPGAFCHLFGLYGDVMKVKLVASRGMALVQMRYPVQAANAQRLLDQTPLSGMTIEVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTASALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSFLSGEHHIEK 921          
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: A0A6H5KZ42_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ42_9PHAE)

HSP 1 Score: 843 bits (2178), Expect = 8.590e-290
Identity = 557/657 (84.78%), Postives = 567/657 (86.30%), Query Frame = 1
Query:    1 RFRSSDKKPTTNAAPGGAIKPRSRVPRLDPVQIQALTAAAAVAKKSARQPKSEENVEGKESGSKAAXXXXXXXXXXDGKTLSGFVKEGAGSRGGSGNKTANKREAAEMLGPDATEQLAAATAKVFLEKRTXXXXXXXXXXXXXXXXXXXXXXXXRVSDDGDGEDASLSAGKDVEAGDSWEKAGGRQDESKRKACAVEGDDEGGKGYGGKRTAGAGGGSVGEEVPVDGVVTRRGGLRSGSRGGGKDFPPENKTKGXXXXXXXXXXEDGVEVVEGEGPSTSQEIGE-KVEEAAQCDGTTGNAEEGEQAENGENDGETXXXXXXXXXXXXXXXXXXXXXX--LEAGDEVDDRSKGRXXXXXXXKSGEGKASDGAEGXTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERVDVGAWAAAGPVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLVSSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHR--------FSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTTSALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSFLSGEHHIEK 1938
            RFRSSDKKPTTNAAPGGAIKPRSRVPRLDPVQIQALTAAAA+AKKS RQPKSEE VEGKESGSK A          DGKTLSGFVKEGAGS GGSGNKTANKREAAEMLGPDATEQLAAATAKVFLEKR XXXXXXXXXXXXXXXXXXXXXXXXRVSDDGDGE+ASLSA KDVEAGDS EKAG RQDESKRKAC VE DDEG KGY GKRTAGAGGGSVGEE  V+GVVTRRGGLRSGSRGGGKDFPPE+K KG           DGVEV EG+ PSTSQE GE KVE A QCDGTTGNAEEGEQ          XX           XXXXXXXXX  LEAGDEV+ RSKGR       K GE KASDGAEG T  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERVDVGAWAAAGPVARSPIVMVRHVDTLEVSPGAFC LFGLYGDVMKVK+V+SRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHR        FSTTPTP+DKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHG VSSVDLDTHAKAPLDT SA ASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSFLSG+HHIEK
Sbjct:  491 RFRSSDKKPTTNAAPGGAIKPRSRVPRLDPVQIQALTAAAALAKKSVRQPKSEEIVEGKESGSKTATLAGRGGGGGDGKTLSGFVKEGAGSSGGSGNKTANKREAAEMLGPDATEQLAAATAKVFLEKRXXXXXXXXXXXXXXXXXXXXXXXXXRVSDDGDGEEASLSAEKDVEAGDSLEKAGSRQDESKRKACTVEVDDEGEKGYSGKRTAGAGGGSVGEEALVEGVVTRRGGLRSGSRGGGKDFPPEDKAKGAGVALEEKAKADGVEVAEGKDPSTSQETGEEKVEGATQCDGTTGNAEEGEQXXXXXXXXXXXXEPEVEAGGEDKXXXXXXXXXXKLEAGDEVEGRSKGRCEVEAGEKQGERKASDGAEGETKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERVDVGAWAAAGPVARSPIVMVRHVDTLEVSPGAFCHLFGLYGDVMKVKIVASRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHRQSCWDRFAFSTTPTPDDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGPVSSVDLDTHAKAPLDTISARASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSFLSGKHHIEK 1147          
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: A0A7S3UWL0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL0_HETAK)

HSP 1 Score: 116 bits (290), Expect = 1.620e-23
Identity = 79/211 (37.44%), Postives = 111/211 (52.61%), Query Frame = 1
Query: 1243 WAAAGPVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLVSSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTTSALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHN 1875
            W+  G    SP+V+V++ D   V       LFGLYGDV+KVK+++ +  ALVQ  +P+QAANA   L+ TPL+G TL    S+ + I D +A+DFS V  +HR+     P D  Y+ +L PP P L V NV  + T E + +++ + GAVSSV              ALA  G +  E                 +   + AVHALIMTH+
Sbjct:  305 WSEGGG---SPLVLVQNADPAHVRGEHLAALFGLYGDVLKVKVMTHKACALVQYAHPLQAANAMAFLNDTPLAGQTLRCVRSTSFEIKDQSASDFSAVP-VHRYRGVERPLDPAYQRNLVPPGPRLAVANVG-EATEEALRALYGRFGAVSSV--------------ALAGDGTATVE-----------------MSDVQTAVHALIMTHH 479          
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: A0A7S2WBW3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBW3_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.220e-18
Identity = 57/131 (43.51%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 1243 WAAAGPVARSP-----IVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLVSSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTL 1620
            W  A P A +      ++ V +VDT   +      LFG+YGDV+KVK++SSR  AL+Q  YP  A  A++ LD  PL G  L +  SSQ  INDP+A D +    L RFS T +P D  Y+D L PP  TL
Sbjct:   56 WLEALPEANTEDGCTRVLHVTNVDTNYCTTDMLAILFGVYGDVIKVKILSSREAALIQFAYPAMAFFARQHLDGCPLLGRNLAIAYSSQVGINDPSAADLTSRPTLRRFSATTSPSDPMYQDHLVPPTNTL 186          
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: I2CQY0_NANGC (Polypyrimidine tract binding protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQY0_NANGC)

HSP 1 Score: 90.1 bits (222), Expect = 9.420e-16
Identity = 70/223 (31.39%), Postives = 106/223 (47.53%), Query Frame = 1
Query: 1243 WAAAGPVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLVSSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTTSALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSF 1911
            W+A  P   + +++V+ ++   V   A   LFGLYGDV +VK++  +  A+V+M  PVQA  A+ LLD +PL G  ++VK S+Q TI D  A DF+    LH +    +P    Y  +L  P   L + N+  D +  T  S+  +   V  V                     +   P+  +  ALV  ++       EAAVHA I+ HN  +  R L V+F
Sbjct:  123 WSARLPGTDTCVLIVQGLNMEMVGAEALAALFGLYGDVRRVKMMPEQDSAIVEMERPVQAYVAKWLLDASPLGGRVIKVKSSTQDTIRDVQAQDFTAFP-LHGYRQYASPRHPSYLANLVEPTAVLRIANIDWDTSEITFRSLLTQQEGVMGV---------------------TRLLPSSHTSPALVSFQS------VEAAVHACILLHNQEVDGRLLYVTF 317          
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: A0A7S3UV41_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV41_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 7.380e-14
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1
Query: 1243 WAAAGPVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLVSSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKR 1584
            W+  G    SP+V+V++ D   V       LFGLYGDV+KVK+++ +  ALVQ  +P+QAANA   L+ TPL+G TL    S+ + I D +A+DF   +GL      P+ +  R
Sbjct:  158 WSEGGG---SPLVLVQNADPAHVRGEHLAALFGLYGDVLKVKVMTHKACALVQYAHPLQAANAMAFLNDTPLAGQTLRCVRSTSFEIKDQSASDFRWPRGLPLSPPPPSGQPSR 268          
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: T1ESN3_HELRO (RRM domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1ESN3_HELRO)

HSP 1 Score: 80.5 bits (197), Expect = 3.880e-12
Identity = 52/147 (35.37%), Postives = 80/147 (54.42%), Query Frame = 1
Query: 1276 IVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLV-SSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFS-------GVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAV 1692
            +V+V ++D  +V+P A   LFG+YGDV+KVK++ + +  AL+Q   P+QA  A   LD+  L G  ++V PS    +  P    F            LHRF     P  K Y +++ PP  TL + N+ P  + ET+ ++F+KHG V
Sbjct:  168 VVLVSNLDEEKVNPDALFTLFGVYGDVIKVKIMFNKKDTALIQFNDPMQAQTAMLNLDKLKLWGKVIKVTPSKHTIVQMPKDGQFDINLTKDYTNSTLHRFK---KPNSKNY-NNIFPPAATLHLSNI-PSTSKETLVALFSKHGTV 309          
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: A0A085NRF5_9BILA (Uncharacterized protein n=2 Tax=Trichuris suis TaxID=68888 RepID=A0A085NRF5_9BILA)

HSP 1 Score: 79.7 bits (195), Expect = 2.430e-11
Identity = 71/228 (31.14%), Postives = 106/228 (46.49%), Query Frame = 1
Query: 1258 PVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLV-SSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPT--------ATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTTSALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAER-RLRVSF 1911
            P+A SP+++V +++  +V+P A   LFG+YGDV +VK++ + +  ALVQ   P QA  AQ  LD+  L   T+ V  S   T+  P           D+S +  LHRF     P  K Y + + PP  +L + N+    T E I + F  +G V    + +    P D                        H  A  ++ +TE  + AL+  HNL L+E   LRVSF
Sbjct: 1711 PIAVSPVLLVSNLNEDKVTPDALFTLFGVYGDVQRVKILFNKKNSALVQYSEPTQAQLAQHHLDKVTLWSRTIRVSYSKHLTVQLPKEGQPDAGLTKDYS-LSLLHRFK---KPGSKNYLN-IYPPSASLHLSNIPTSTTEEFIVNAFVANGFV----VKSFKFFPKD------------------------HKMAIIQLESTEQGIEALVAMHNLQLSENAHLRVSF 1905          
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: A0A0N4VR91_ENTVE (Uncharacterized protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4VR91_ENTVE)

HSP 1 Score: 75.1 bits (183), Expect = 5.510e-11
Identity = 68/221 (30.77%), Postives = 99/221 (44.80%), Query Frame = 1
Query: 1270 SPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLV-SSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPT-----ATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTTSALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAER-RLRVSF 1911
            SP+V+V ++D   V+P A   LFG+YGDV +VK++ + +  AL+Q   P QA  A + LD+       + V  S    +  P        D+S    LHRF     P  K Y + + PP  TL + N+ P++T E +T+ F +HG                             +P         H  A  ++   E A++ALI  HN  LAE   LRVSF
Sbjct:   89 SPVVLVSNLDENRVTPDALFTLFGVYGDVQRVKILFNKKDNALIQYAEPQQAQFAIQHLDKVRWHDKQMRVAASKHTNVQMPKEDAGLTRDYS-QSPLHRFK---KPGSKNYMN-IYPPSATLHLSNIPPNITEEYLTNAFEQHGF----------------------------QPKGFKFFPKDHKMALLQLNDVETAINALIEMHNFKLAENAHLRVSF 276          
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: A0A1X7UYZ1_AMPQE (Uncharacterized protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UYZ1_AMPQE)

HSP 1 Score: 76.3 bits (186), Expect = 1.140e-10
Identity = 55/155 (35.48%), Postives = 79/155 (50.97%), Query Frame = 1
Query: 1246 AAAGPVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLV-SSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTI-------NDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHG 1686
            A AG VA +P+V+  +++   +SP A   LFG+YGDVM+VK++ S R  ALVQ R   QA NA   L+   L G  L +  S    +       N+   T+      LHRF     P  K Y++ + PP PTL + N+   +T E +  +F   G
Sbjct:  273 AGAGVVAPTPVVLASNLNDKMISPHALFILFGVYGDVMRVKILYSKRDSALVQFREAQQAQNAVTHLNGCMLYGKKLHLTLSKHTQVQMPQPGSNEDALTEDFTNSPLHRFK---KPGSKNYQN-IYPPSPTLHLSNIPDGITEEYLRGLFTSTG 423          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN53_ECTSI5.450e-30390.45PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=... [more]
A0A6H5KZ42_9PHAE8.590e-29084.78RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3UWL0_HETAK1.620e-2337.44Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2WBW3_9STRA3.220e-1843.51Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
I2CQY0_NANGC9.420e-1631.39Polypyrimidine tract binding protein n=1 Tax=Nanno... [more]
A0A7S3UV41_HETAK7.380e-1440.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
T1ESN3_HELRO3.880e-1235.37RRM domain-containing protein n=1 Tax=Helobdella r... [more]
A0A085NRF5_9BILA2.430e-1131.14Uncharacterized protein n=2 Tax=Trichuris suis Tax... [more]
A0A0N4VR91_ENTVE5.510e-1130.77Uncharacterized protein n=1 Tax=Enterobius vermicu... [more]
A0A1X7UYZ1_AMPQE1.140e-1035.48Uncharacterized protein n=2 Tax=Amphimedon queensl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig718contigEcto-sp13_S_contig718:57..4165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score716.1
Seed ortholog evalue1.3e-203
Seed eggNOG ortholog2880.D7FN53
Model size2744
KEGG koko:K13218,ko:K14948
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of secretory granule organization
EggNOG OGsKOG1190@1,KOG1190@2759
Ec32 ortholog descriptionhuman PTB (hnRNP) homolog family member (ptb-1)
Ec32 orthologEc-06_008430.2
Cds size1620
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig718.18294.1prot_Ecto-sp13_S_contig718.18294.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig718 378..3362 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463983.5184333-UTR-Ecto-sp13_S_contig718:56..3771681463983.5184333-UTR-Ecto-sp13_S_contig718:56..377Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig718 57..377 +
1681463983.596052-UTR-Ecto-sp13_S_contig718:3362..41651681463983.596052-UTR-Ecto-sp13_S_contig718:3362..4165Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig718 3363..4165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463983.5313287-CDS-Ecto-sp13_S_contig718:377..14181681463983.5313287-CDS-Ecto-sp13_S_contig718:377..1418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig718 378..1418 +
1681463983.546624-CDS-Ecto-sp13_S_contig718:1733..18201681463983.546624-CDS-Ecto-sp13_S_contig718:1733..1820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig718 1734..1820 +
1681463983.5585687-CDS-Ecto-sp13_S_contig718:2201..23021681463983.5585687-CDS-Ecto-sp13_S_contig718:2201..2302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig718 2202..2302 +
1681463983.5702395-CDS-Ecto-sp13_S_contig718:2539..26691681463983.5702395-CDS-Ecto-sp13_S_contig718:2539..2669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig718 2540..2669 +
1681463983.5825155-CDS-Ecto-sp13_S_contig718:3101..33621681463983.5825155-CDS-Ecto-sp13_S_contig718:3101..3362Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig718 3102..3362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig718.18294.1

>prot_Ecto-sp13_S_contig718.18294.1 ID=prot_Ecto-sp13_S_contig718.18294.1|Name=mRNA_Ecto-sp13_S_contig718.18294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=540bp
MLGPDATEQLAAATAKVFLEKRTNKREAAEMLGPDATDQLAAATAKVRVS
DDGDGEDASLSAGKDVEAGDSWEKAGGRQDESKRKACAVEGDDEGGKGYG
GKRTAGAGGGSVGEEVPVDGVVTRRGGLRSGSRGGGKDFPPENKTKGEDV
APEEKTKEDGVEVVEGEGPSTSQEIGEKVEEAAQCDGTTGNAEEGEQAEN
GENDGETESEPEIEAGGEDKEKEEEEEEKLEAGDEVDDRSKGRDEAEDDE
KSGEGKASDGAEGETKVKVETEDEADAEADAEGDGNHDDDDDEAAGDGEE
ERVDVGAWAAAGPVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKL
VSSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTAT
DFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSI
FAKHGAVSSVDLDTHAKAPLDTTSALASTGGSNAEPTKPSVQALVHMEAD
GKVRATEAAVHALIMTHNLTLAERRLRVSFLSGEHHIEK*
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mRNA from alignment at Ecto-sp13_S_contig718:57..4165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig718.18294.1 ID=mRNA_Ecto-sp13_S_contig718.18294.1|Name=mRNA_Ecto-sp13_S_contig718.18294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4109bp|location=Sequence derived from alignment at Ecto-sp13_S_contig718:57..4165+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTCCGCTCGTCTGATAAAAAGCCGACGACCAATGCAGCGCCCGGAGG CGCAATCAAGCCGAGGTCTCGTGTTCCTCGCCTCGATCCTGTCCAAATTC AGGCACTAACGGCAGCGGCGGCCGTGGCAAAGAAATCTGCCCGTCAGCCG AAGTCGGAAGAGAATGTGGAGGGCAAAGAGAGCGGCAGCAAAGCAGCTGC AGTAGCGGGTAGGGGAGGTGGCGGTGGGGACGGCAAGACTTTGTCCGGTT TCGTGAAGGAGGGTGCGGGATCTCGCGGAGGTAGCGGCAACAAGACAGCG AACAAGCGGGAGGCCGCCGAAATGCTTGGGCCGGACGCTACCGAACAGCT GGCTGCGGCGACAGCCAAGGTGTTTCTGGAAAAGAGGACCAATAAACGCG AGGCGGCAGAGATGCTGGGCCCCGACGCGACGGATCAGCTGGCGGCGGCG ACGGCGAAGGTGAGGGTTAGTGACGATGGGGACGGCGAAGACGCTTCGTT GTCGGCCGGAAAGGACGTAGAGGCGGGCGACAGCTGGGAAAAAGCGGGGG GCCGGCAGGACGAGAGTAAGCGCAAGGCATGCGCGGTAGAGGGTGACGAC GAGGGTGGAAAGGGTTATGGCGGGAAGCGAACGGCCGGTGCTGGCGGGGG CAGTGTAGGAGAAGAAGTCCCGGTGGACGGCGTGGTGACCCGTCGAGGGG GGCTCAGGAGCGGAAGCAGGGGGGGTGGAAAAGATTTCCCTCCAGAGAAC AAGACAAAGGGAGAGGACGTTGCGCCGGAAGAGAAAACAAAGGAAGACGG CGTTGAGGTCGTGGAGGGAGAAGGCCCTTCCACGTCGCAGGAAATCGGCG AGAAGGTTGAGGAGGCTGCTCAATGTGATGGCACGACCGGCAACGCAGAA GAAGGGGAGCAAGCGGAGAACGGAGAAAACGACGGGGAAACTGAGTCCGA GCCCGAAATAGAGGCTGGGGGAGAGGACAAGGAGAAAGAGGAGGAGGAGG AGGAGAAGCTCGAAGCCGGTGACGAAGTAGACGACAGGAGCAAAGGAAGG GATGAGGCGGAAGACGACGAGAAGTCAGGGGAAGGGAAAGCCAGCGATGG GGCCGAAGGAGAGACTAAAGTTAAGGTCGAGACGGAGGACGAGGCCGACG CCGAGGCCGACGCTGAGGGCGATGGCAACCATGATGATGACGATGACGAA GCCGCGGGAGACGGAGAAGAGGAGAGGGTTGACGTTGGGGCTTGGGCTGC GGCTGGTCCGGTTGCTCGGTCTCCCATTGTCATGGTGCGGCACGTTGACA CGCTCGAGGTTAGCCCGGGCGCCTTCTGCCAACTGTTCGGGCTGTACGGT GACGTGATGAAGGTGAGAACACATATCTAATTACAGAGGATTTGTCCTGG CGTGCCGAGGAATTACTGGTAGCTTGCAGTGTCGTGGGCTCCACACTCTA TCGCATGGAGATATGATGACCCCATACGCAAAGACTGTTCCTGCTGTGGC ACGCACGTCAACCACACCTCAACCCTCAAAGTACGTTTACCCGTTCACGG CTGAGACCCGACTAGATGTGTGTACTTTCACCTCCACGTTTCCGTGTGAC CCGCCCTCACTGCCGTGCGCTGCTCTATCGTGCCACTGCTGTATGGCGCT ACCCATTGGTCTTCTTGTTTTTACCAGGTGAAACTTGTTTCCAGCCGAGG GATGGCGCTCGTGCAGATGAGGTACCCCGTCCAAGCTGCCAACGCCCAGC GCCTCCTGGACCAGGTGAGACTGAAAAATGCTCTTCACTTAGCCGTGTGC GTCTTCTTATTTCCGTAACGTTGAGCCACATGATGTTCGCATTGCTCCCA TCGTCTCCCTGCTCACCTCGTCCCTCTGGCGAGGATGACCTTACACGTCA GGGAATGTTGCGCGAGACGACCGTGTTTGTGTGTTTCATAGAAAAAGTTC TTCAGAAAATTTGTTGCGTCGAGCGAATCTCTGATCTTGTTGGAGCTTCT TGAATTGTTTCACAACGCCTCTTGGCATCGGTCTCTCTCTCAGCCTGCCG GTCCTTCCGCCCGTCCGTCATTTTGCTTGTGCTTCTTTGGACATCCATCC ACATTCTGCTGTGTACCGCCTTGGCGCAAATATTTTGCATACCAGACACC GCTCTCCGGCATGACGTTAGAGGTCAAGCCGTCCAGCCAGTGGACTATCA ACGACCCAACCGCTACAGACTTCAGCGGGGTCCAAGGGTTGCACAGGCAA GCACTCCAGCCAACGGTTGGTGTTCGACCGAAAACTACCTGTGTGGTGTA GCGCTTCCTCTCGGCAAATTCGGTAGGCGTACCCCAAACTCGTGCTGAGA TAGATCGTTTTGCGTTGGACGCTGCTGGTGCATGCGCGATTGATCGCCTC TCTTCCCCCCTCCTCCAACGCACATGAACGACCCCCGCCCGCTCTTGGTA CAATATCGGAAACGATTTTGAATTGTTCTTCAGGTTCAGTACGACCCCTA CACCAGAAGACAAGCGCTACCGCGACTCCCTGTCGCCGCCGTGCCCTACG CTGGTGGTGGACAACGTGTCTCCAGACGTGACCGCTGAAACCATCACCTC CATTTTTGCGAAGGTGTGTCGTCATCCGAACGCTTGCTTCGTTGTACGCG ACGTGATGACACGTACGTACGAACGCCGTTTGTGTATCAGGCTGCTTGTG TATGGAACCCTTCACCAAACAGTTCGAATACTGTTTAGAGCGCTGTATTG CTTTGTAGATGACGGCTCCGACCGCGCAAACATGTTGCATGAATGTGAAT GCCGTTGTTTCGTGGCTGAAAACCTCGCTGATTGTTGCACAGGAGTAGAG TACTACAGCTGTGCGCCGCGCTGTCTGATTTGGGAAACGTCATTTCCTTC CTCCCCGGGTGTCTTCCGATCGCCGTTTATGCCGAAGAGCCCACTAAGCA GTACAGCTATCCCCTTTTTCGCGATCCCAACCCTGCTGGAACATCTAAAC AAGCGATAAGTCCGCTGTCCCTCGCGCATGGTGCCTTGTCAACAGCATGG GGCGGTGTCTTCCGTAGACCTCGACACCCATGCCAAGGCCCCGTTGGACA CGACATCAGCCCTTGCAAGCACCGGGGGTAGCAACGCTGAGCCTACCAAG CCTTCGGTGCAGGCCCTGGTGCACATGGAAGCGGACGGGAAAGTCCGAGC AACGGAAGCTGCAGTGCACGCGCTCATCATGACCCACAACCTCACCTTGG CGGAGCGCAGGCTGCGTGTATCTTTCCTGAGCGGAGAGCACCATATCGAA AAGTAAAGTATACCAAGTGGTACAGTAAACGGAAATGGAGAGCGGACTGA AGGATGGACTGGTGGAGACGACGGCGTTTGATTGGTAGTGGGGATAGATC GGTTTGCTTCGGTTCATGTCGTTGGACCGGTGGTCTCAACGCGGCTTGTA TGGGGGGATGGAAGCCGCGTTCTTGGCACGGCGGTATTCTGTTCCTCTAG GCTCGGCAGTGTTGATGATTTCATGCGCGCTGTCCGCGTGACTCTAGTGC GCCCACGAATCCGGGGACCTTTGCGTCAATGTCACAGTCTTGTGAGGAGA GAGAACAGATTCGCCTGTAGTGTGTATGTCACTGATGATGACATTTTGCA ACAACTTCATTTAGTATATAAAAATCGAGGTGTTTGAGGATTCCCACGAA ATCCCACGTTTTGCGCTCCAATGCCGATGCAACCAACACCTGGCGGAATA ATTATGTTGGCACACGGGTGGATGAGTGATGTTGTGGGTTCGAGTTTTTC TACACGATTCGTTATGTGTTCCATGATTCCGTCGGCTTCCATCCAGCAAA CTCTCCTAAATCTAACGCAAATCGTGGTGCGGAGGTACTTCGAAGTACTT CGACGTTTTGAGGGTCCGAGTGCCGAAATTCGAAAGACTGGTGTTCGCTG GATTCATAATCGTGGCGTTGATTGTCTGGTGAATGTAGTTGTTCTGATCC ACCCATCGAAGATGGAGGTGATACACGCGTGTGAATCGCCTACCAGCGAA GAATCGGATAACATCACGCAATGACATCCGTTGATGTGCAGAGTGGAATA TGTCGGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig718:57..4165+

>mRNA_Ecto-sp13_S_contig718.18294.1 ID=mRNA_Ecto-sp13_S_contig718.18294.1|Name=mRNA_Ecto-sp13_S_contig718.18294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1620bp|location=Sequence derived from alignment at Ecto-sp13_S_contig718:57..4165+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGGGCCGGACGCTACCGAACAGCTGGCTGCGGCGACAGCCAAGGT
GTTTCTGGAAAAGAGGACCAATAAACGCGAGGCGGCAGAGATGCTGGGCC
CCGACGCGACGGATCAGCTGGCGGCGGCGACGGCGAAGGTGAGGGTTAGT
GACGATGGGGACGGCGAAGACGCTTCGTTGTCGGCCGGAAAGGACGTAGA
GGCGGGCGACAGCTGGGAAAAAGCGGGGGGCCGGCAGGACGAGAGTAAGC
GCAAGGCATGCGCGGTAGAGGGTGACGACGAGGGTGGAAAGGGTTATGGC
GGGAAGCGAACGGCCGGTGCTGGCGGGGGCAGTGTAGGAGAAGAAGTCCC
GGTGGACGGCGTGGTGACCCGTCGAGGGGGGCTCAGGAGCGGAAGCAGGG
GGGGTGGAAAAGATTTCCCTCCAGAGAACAAGACAAAGGGAGAGGACGTT
GCGCCGGAAGAGAAAACAAAGGAAGACGGCGTTGAGGTCGTGGAGGGAGA
AGGCCCTTCCACGTCGCAGGAAATCGGCGAGAAGGTTGAGGAGGCTGCTC
AATGTGATGGCACGACCGGCAACGCAGAAGAAGGGGAGCAAGCGGAGAAC
GGAGAAAACGACGGGGAAACTGAGTCCGAGCCCGAAATAGAGGCTGGGGG
AGAGGACAAGGAGAAAGAGGAGGAGGAGGAGGAGAAGCTCGAAGCCGGTG
ACGAAGTAGACGACAGGAGCAAAGGAAGGGATGAGGCGGAAGACGACGAG
AAGTCAGGGGAAGGGAAAGCCAGCGATGGGGCCGAAGGAGAGACTAAAGT
TAAGGTCGAGACGGAGGACGAGGCCGACGCCGAGGCCGACGCTGAGGGCG
ATGGCAACCATGATGATGACGATGACGAAGCCGCGGGAGACGGAGAAGAG
GAGAGGGTTGACGTTGGGGCTTGGGCTGCGGCTGGTCCGGTTGCTCGGTC
TCCCATTGTCATGGTGCGGCACGTTGACACGCTCGAGGTTAGCCCGGGCG
CCTTCTGCCAACTGTTCGGGCTGTACGGTGACGTGATGAAGGTGAAACTT
GTTTCCAGCCGAGGGATGGCGCTCGTGCAGATGAGGTACCCCGTCCAAGC
TGCCAACGCCCAGCGCCTCCTGGACCAGACACCGCTCTCCGGCATGACGT
TAGAGGTCAAGCCGTCCAGCCAGTGGACTATCAACGACCCAACCGCTACA
GACTTCAGCGGGGTCCAAGGGTTGCACAGGTTCAGTACGACCCCTACACC
AGAAGACAAGCGCTACCGCGACTCCCTGTCGCCGCCGTGCCCTACGCTGG
TGGTGGACAACGTGTCTCCAGACGTGACCGCTGAAACCATCACCTCCATT
TTTGCGAAGCATGGGGCGGTGTCTTCCGTAGACCTCGACACCCATGCCAA
GGCCCCGTTGGACACGACATCAGCCCTTGCAAGCACCGGGGGTAGCAACG
CTGAGCCTACCAAGCCTTCGGTGCAGGCCCTGGTGCACATGGAAGCGGAC
GGGAAAGTCCGAGCAACGGAAGCTGCAGTGCACGCGCTCATCATGACCCA
CAACCTCACCTTGGCGGAGCGCAGGCTGCGTGTATCTTTCCTGAGCGGAG
AGCACCATATCGAAAAGTAA
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