mRNA_Ecto-sp13_S_contig7179.18293.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7179.18293.1
Unique NamemRNA_Ecto-sp13_S_contig7179.18293.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7179.18293.1 vs. uniprot
Match: A0A6H5KSP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSP8_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 7.730e-31
Identity = 78/93 (83.87%), Postives = 80/93 (86.02%), Query Frame = 1 
Query:  244 MIHAATGWPTLDHRLMFEPTPCFSIISSGAPPSQAPSSXXXXXXXX-----RNVGDNSSGSGNGSPIASAGTQAGAAGLGQGYTGHDDEIGVI 507
            M HAATGWPTLDHRL FEPTPCFSIISSGA P QAPSSXXXXXXXX     R VG+NSS SG+GS  ASAGTQAGAAGLGQGYTGHDDEIGVI
Sbjct:    1 MTHAATGWPTLDHRLRFEPTPCFSIISSGASPFQAPSSXXXXXXXXXXXXXRKVGNNSS-SGHGSATASAGTQAGAAGLGQGYTGHDDEIGVI 92
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BLAST of mRNA_Ecto-sp13_S_contig7179.18293.1 vs. uniprot
Match: D7G0H1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H1_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 9.530e-24
Identity = 70/89 (78.65%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:  244 MIHAATGWPTLDHRLMFEPTPCFSIISSGAPPSQAPSSXXXXXXXXRNVGDNSSG-SGNGSPIASAGTQAGAAGLGQGYTGHDDEIGVI 507
            MIHAATGWPTLDHRL FEPTPCFSIISSGA P QAPSSXXXXXXXX          SG+GS  A AGTQAGAAGLGQG TG+DDEIGVI
Sbjct:    1 MIHAATGWPTLDHRLRFEPTPCFSIISSGASPFQAPSSXXXXXXXXXXXXXXXXXXSGHGSATAPAGTQAGAAGLGQGCTGYDDEIGVI 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7179.18293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSP8_9PHAE7.730e-3183.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0H1_ECTSI9.530e-2478.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7179contigEcto-sp13_S_contig7179:5670..7051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score107.5
Seed ortholog evalue3.3e-21
Seed eggNOG ortholog2880.D7G0H1
Model size508
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.protein polyglycylation
EggNOG OGsKOG2157@1,KOG2157@2759
Ec32 ortholog descriptionTubulin-tyrosine ligase/Tubulin polyglutamylase
Ec32 orthologEc-19_003290.1
Cds size264
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463983.4551384-UTR-Ecto-sp13_S_contig7179:5669..59121681463983.4551384-UTR-Ecto-sp13_S_contig7179:5669..5912Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7179 5670..5912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463983.4687946-CDS-Ecto-sp13_S_contig7179:5912..59451681463983.4687946-CDS-Ecto-sp13_S_contig7179:5912..5945Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7179 5913..5945 +
1681463983.4803357-CDS-Ecto-sp13_S_contig7179:6820..70511681463983.4803357-CDS-Ecto-sp13_S_contig7179:6820..7051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7179 6821..7051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7179.18293.1prot_Ecto-sp13_S_contig7179.18293.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7179 5913..7051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7179.18293.1

>prot_Ecto-sp13_S_contig7179.18293.1 ID=prot_Ecto-sp13_S_contig7179.18293.1|Name=mRNA_Ecto-sp13_S_contig7179.18293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
MIHAATGWPTLDHRLMFEPTPCFSIISSGAPPSQAPSSSSRSGGGGRNVG
DNSSGSGNGSPIASAGTQAGAAGLGQGYTGHDDEIGVI
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mRNA from alignment at Ecto-sp13_S_contig7179:5670..7051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7179.18293.1 ID=mRNA_Ecto-sp13_S_contig7179.18293.1|Name=mRNA_Ecto-sp13_S_contig7179.18293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1382bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7179:5670..7051+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCACCTACAGGAGAGAGGCCAACAAAGAACGTGGCACAGTAGTAGAA
CAGAGCGGCGAAGGCCAAGGGAAGTCCAGGCTCCGTAGACTGCGCTCAAG
TTTTGGTGGAAAAAGTCAGTGAGTAGCATACCTCCCGGTGGGAGCGACGA
CATCAGGAACAGATAAACATTTAAGTACCTCGCAGTGGTTTCGTTGGTGC
ATGGCCGCTCGCCCTTGGGGACACGGCCAGACGAGAGTTATCGATGATTC
ACGCAGCAACAGGATGGCCCACTCTGGTGAGTGCATCGCGTTCACGACGA
GCTTTTAAGCCGAAGAAAGCGTGTCGATGTGTGACGCTATTTTGCATCCT
GTTCCTGGTACACACTAAGCAGCCAACAGCAGCAGCAGGTATCCTTGGTT
GGCAAGGATGGCACCCGCACACTTGTAGGGAATGCAGTGTATACCAATCC
TGGTGGGACCAAGAAATCTATTCAAAACAGCAGTTTGGGGTATGGTAGAC
CTTGCAATCATGCGGCATCTGTTATTGCCACCTCCCACAACAGCAGTGCG
GCAACCCGGTCCAACGATTATACTGTAATGTAGACGATGATGGATGTGCG
GCATTACGTGGGCCGTTTCATCCCCTAGCCTCCCACTAACTCAGACAACC
AGTTAGATAGCAGGAGAACCAACGGGCGACTCGGGGAGGTTTTCAATTGA
GTGCCATGCCCGTGTAGATGAGTGAGTGCCATGCCCGTGCAGATGCGTAC
GTGCACGCGGAGGGGGGGGGAGCAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGCAGGCTCCGCCCGGAGCAAGAGAAACAGAGTGTACCGTACC
AATGAACAAGATCAGCAAGAATTTCGACGAATCGCCTGCTGCTGTAGCAT
GTATGTCTATCCCCCCGCGGCGGCTTTCGCTTCGCTCTTGGGATCATCGT
CGCCACGCTGCCCCCTGCTGCGTTATGCCTTTGTTGGTGTTGACCGGAGC
TATGCACACCTACAGTAGTACCACATGTCGCCTCCTGAAGCGTCTTTCGA
CCTACCTCTCGTGGCGTCGGTCGAGCCACCTACACTGCGCTACGTCACCT
GCAGCTGAAAGCTTTCCGTCGACCGACAAACGCCTCCCGTGTTATCGACA
GGACCACCGGCTGATGTTCGAGCCCACGCCTTGCTTCTCCATCATCAGCT
CTGGCGCTCCACCATCCCAAGCACCAAGTAGCAGCAGCAGAAGCGGCGGA
GGCGGCAGAAACGTGGGCGACAACAGCAGTGGCAGTGGGAACGGCTCTCC
GATAGCATCAGCAGGCACGCAAGCGGGGGCGGCGGGTTTAGGACAAGGCT
ACACGGGCCACGATGATGAGATCGGCGTGATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7179:5670..7051+

>mRNA_Ecto-sp13_S_contig7179.18293.1 ID=mRNA_Ecto-sp13_S_contig7179.18293.1|Name=mRNA_Ecto-sp13_S_contig7179.18293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7179:5670..7051+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTCACGCAGCAACAGGATGGCCCACTCTGGACCACCGGCTGATGTT
CGAGCCCACGCCTTGCTTCTCCATCATCAGCTCTGGCGCTCCACCATCCC
AAGCACCAAGTAGCAGCAGCAGAAGCGGCGGAGGCGGCAGAAACGTGGGC
GACAACAGCAGTGGCAGTGGGAACGGCTCTCCGATAGCATCAGCAGGCAC
GCAAGCGGGGGCGGCGGGTTTAGGACAAGGCTACACGGGCCACGATGATG
AGATCGGCGTGATT
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