mRNA_Ecto-sp13_S_contig7178.18291.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7178.18291.1
Unique NamemRNA_Ecto-sp13_S_contig7178.18291.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7178.18291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7178contigEcto-sp13_S_contig7178:17..1206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size567
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_005520.1
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463983.2798932-CDS-Ecto-sp13_S_contig7178:16..1731681463983.2798932-CDS-Ecto-sp13_S_contig7178:16..173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7178 17..173 -
1681463983.2899988-CDS-Ecto-sp13_S_contig7178:411..6221681463983.2899988-CDS-Ecto-sp13_S_contig7178:411..622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7178 412..622 -
1681463983.2994554-CDS-Ecto-sp13_S_contig7178:1007..12061681463983.2994554-CDS-Ecto-sp13_S_contig7178:1007..1206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7178 1008..1206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7178.18291.1prot_Ecto-sp13_S_contig7178.18291.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7178 17..1206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7178.18291.1

>prot_Ecto-sp13_S_contig7178.18291.1 ID=prot_Ecto-sp13_S_contig7178.18291.1|Name=mRNA_Ecto-sp13_S_contig7178.18291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
MSLNTGVEPWSNSPPRSSCAKNKSVLLKARWRTGTEPPPSQGWDEVHCDN
SLPRTFDGWESGHFSSALAAASRGTTVERRRTDGRWRGKENIYPNRVEPR
ANNQQGKQSSHPGLAIGPLQVSSVALRPFAHGELYRRPPQRLAGRQPLMA
PGVALSSSLAPIEPHGFDPRLLDKEALCIGGGISRGAPL
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mRNA from alignment at Ecto-sp13_S_contig7178:17..1206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7178.18291.1 ID=mRNA_Ecto-sp13_S_contig7178.18291.1|Name=mRNA_Ecto-sp13_S_contig7178.18291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1190bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7178:17..1206- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCTGAACACTGGCGTTGAGCCATGGTCAAACTCCCCACCCCGTTC
CTCGTGCGCCAAGAATAAATCGGTGTTGCTGAAGGCTCGATGGCGTACGG
GTACCGAACCTCCCCCTAGCCAAGGCTGGGATGAGGTACATTGTGACAAC
AGCTTACCTCGGACCTTCGATGGTTGGGAAAGTGGTCATTTTTCCTCAGG
TACTGTTCTTACAGTACTGTGCTGTGGGGAGGGGATACTTCCTGTCCTTG
TCTCCGGTGTACCACTTCGACTCGACGCCTACCTCCAGATTTGTCCTTCT
CCGTCAATACCGCCTATTTCTGCCGTTGCTGCAGTTGAAGACCTCTGCAG
CATGCTGATCTGTGTACGTCGTTGCCAAAAATACGTTCGTGTGACCACGG
AAGGCGTCCGCGCTAGTTGGACCAGTACGGACATTCGAAGGTACTGAGCA
GAGACCTGAACGGAAATTGATGTGAAGAAAATAACAACCAAAACAACAAC
AACAACCACCACAACCACAACAACAACAACGCAGAGTACCTGGACCTCAC
TATCTAACTGTACCGTATCGTAATATTCCTCCAGCACTTGCTGCTGCTTC
GAGAGGCACTACGGTAGAACGAAGAAGAACGGACGGTCGCTGGCGAGGCA
AGGAAAACATCTACCCCAACAGAGTTGAACCACGGGCAAATAATCAGCAG
GGTAAACAATCGTCCCACCCAGGCCTTGCGATCGGTCCTCTGCAAGTATC
ATCTGTCGCCTTGCGGCCATTCGCTCACGGAGAGCTATATAGAAGGTGGG
CAGCCCTTTGTGCTTCCACCCTGTACTCCAAGCAAACCACGATACATGGT
ACAAATGTTGATATAATGCTACTGCTGAACAATATGGACAAATGACCGAA
ACTACGCATGCATCGGGCGGGACTGATGCGTGCATGATCCTAGATCAAGC
TTGCGGAATCCTGCAAAACAATCTAGACTCCTTTTCCGCTCTCAAAATCT
GTTCGTCCAACTTTGGCGGCTAGTGATGAACAGGCCACCACAACGATTAG
CCGGTCGGCAGCCATTGATGGCCCCGGGAGTCGCGCTTTCTTCCTCACTG
GCTCCGATCGAACCACATGGCTTCGACCCCCGACTCCTCGACAAAGAGGC
TCTTTGCATAGGTGGCGGAATATCTCGGGGAGCTCCACTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7178:17..1206-

>mRNA_Ecto-sp13_S_contig7178.18291.1 ID=mRNA_Ecto-sp13_S_contig7178.18291.1|Name=mRNA_Ecto-sp13_S_contig7178.18291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7178:17..1206- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCTGAACACTGGCGTTGAGCCATGGTCAAACTCCCCACCCCGTTC
CTCGTGCGCCAAGAATAAATCGGTGTTGCTGAAGGCTCGATGGCGTACGG
GTACCGAACCTCCCCCTAGCCAAGGCTGGGATGAGGTACATTGTGACAAC
AGCTTACCTCGGACCTTCGATGGTTGGGAAAGTGGTCATTTTTCCTCAGC
ACTTGCTGCTGCTTCGAGAGGCACTACGGTAGAACGAAGAAGAACGGACG
GTCGCTGGCGAGGCAAGGAAAACATCTACCCCAACAGAGTTGAACCACGG
GCAAATAATCAGCAGGGTAAACAATCGTCCCACCCAGGCCTTGCGATCGG
TCCTCTGCAAGTATCATCTGTCGCCTTGCGGCCATTCGCTCACGGAGAGC
TATATAGAAGGCCACCACAACGATTAGCCGGTCGGCAGCCATTGATGGCC
CCGGGAGTCGCGCTTTCTTCCTCACTGGCTCCGATCGAACCACATGGCTT
CGACCCCCGACTCCTCGACAAAGAGGCTCTTTGCATAGGTGGCGGAATAT
CTCGGGGAGCTCCACTT
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