mRNA_Ecto-sp13_S_contig7174.18287.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7174.18287.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI) HSP 1 Score: 245 bits (626), Expect = 3.330e-62 Identity = 219/652 (33.59%), Postives = 310/652 (47.55%), Query Frame = 3
Query: 1347 SAFFKRSALARLETY*---IHVRPTPIVWARPRLK---SRKNTLVPPFDHGTYTLENKAKVTLRELLKHRNDGGVILEADQLRFILHLVTTHVNMMVHVVSCL--NQSHNVTTGMPWNPAVEPNRRSQDRGKTGTEGGAGNNHQAGGFSAGPDVEIFTKAVVEDTLPAAFWEVAGSPVTR--VREAGWIAETDKVSGRSSMRP*PRMLSGKMFKGDVVRGGYAEGPPPLRKQTRVRKATLRTIIVQLTSAYRLGRSENLLEAFYSLSQEECQLV-EDHLRHWNGNLKCRLSVI-LVCWRKM*QAQPIPTWREIN-RIRHGIPWRGTSF*IPTYHQRRSLRVGFGTQRSTEAFNWTSWTRIHSATRGVARMYLKKRSGWFVRVQKQCTRLLEHLRKWVRTQGPWIVKLLPERV-APGEPRSKSAG*GSFCRIKRQR---------SGRKTVYMFIVAMCENGCRPLMDDTLKRHPRFVEWGKERLANAKKVSAAFPYRNDVIE----------MLGDVPCYTRRDIE---------GANEGVEPRGEAPAGVL*VHLKIYLHFQRGSGTCLPVQRSLPSSPRFFLDGGQEVVLRSKTERIHIRLPSESKRTTAAEKKAARACMEHELEGAEVVQWWVVMTLVGRPFLKTHNDG 3176
FFKR+AL LE Y P I K + +V FD G Y+L + + + +L++R DGGV LE +Q RFI+HLVTT+VNMM HVV + + ++ M WNP VE +R ++ + N + IFT A V+DTLPA+FW+V G+ R EAG + + + + GR +++GK+F G++V GGY+E P P R + A LR+IIVQLT AYRLGRS NLLEA+Y+LS+ E +LV + H HW NL L + + W AQ T ++ H + + + + VG G + +A + S R ++ + + K+ + C E ++ V G R A E KS G ++++QR K + MF+ A+ +NGC LMD K P FVEWGKE LA A S+ + R++ +E +LG+ +R + A G +P+ V V L + F +G CL Q FF ++ +K +RI IRL + K+T AEK +R CM HELEGAEVV WWVVM LVGRPFLK HN G
Sbjct: 760 GVFFKRAALDALERYFNWEYVFDPESIGVFLGTTKVGIDDEEFVVESFDCGEYSLSDGSVMQQWGVLENRTDGGVTLEDEQRRFIIHLVTTYVNMMAHVVPVVIEESTPSMVKDMMWNP-VEAGKRETNKERREELDQIINRVNT---LRDLTLRIFTGAAVKDTLPASFWDVEGNEELREFAEEAGSLKKINFL-GRLECVHNREVVAGKLFTGEIVTGGYSEAPKPDRV-SGAWPAKLRSIIVQLTCAYRLGRSNNLLEAYYALSEAEIELVMKGHRSHWGVNLDYGLPHLDRLTW-----AQTTATDADLQGENSHALRFAVKRCRVFNPNIAPVTVVGCGIR---DAEKYGSLQRDSLDSKYFSHARIGKKLVPPLMGNASCR---EPAKQAVEASGKLFDVARNGRAKATAE---KSGAVGPAAKVRKQRVILLELTPEEREKAMDMFMAAITKNGCGRLMDAIKKHDPGFVEWGKECLAKADLKSSVYTSRDNYLETPDDGRSEDHLLGNTSAEIQRGQQRVARLMTKLDAENGFKPKD---ISVFSVALALACLF---AGACLRPQD-------FFRMVASQMYYDAKLKRIKIRL-LDGKQTEKAEKTPSRVCMYHELEGAEVVDWWVVMALVGRPFLKKHNQG 1377
BLAST of mRNA_Ecto-sp13_S_contig7174.18287.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI) HSP 1 Score: 102 bits (255), Expect = 1.390e-18 Identity = 70/217 (32.26%), Postives = 104/217 (47.93%), Query Frame = 3
Query: 2568 SAG*GSFCRIKRQR---------SGRKTVYMFIVAMCENGCRPLMDDTLKRHPRFVEWGKERLANAKKVSAAFPYRNDVIEMLGDVPCYTRRDIEGANEGVEP-----RGEAPAGVL*VHLKIYLHFQRGSGTCLPVQRSLPSSPRFFLDGGQEVVLRSKTERIHIRLPSESKRTTAAEKKAARACMEHELEGAEVVQWWVVMTLVGRPFLKTHNDG 3176
+ G G ++++QR +T+ MF+ AM NGC+ +M+ K P FV+WG +RL AK S F ++ +G + EG EG + + GV K ++ F + + + FF G+ + R+ IRLP+E K+T +AE+ + CMEH +EGAEVV+W VM LVGRPFLK N G
Sbjct: 349 NGGVGDGIKLRKQRVPLVENTPEEREETMDMFVGAMSANGCQRVMEAIDKVDPGFVDWGLDRLTEAKNASTLFE-----LDDIGGEEHLLGKTSEGVAEGEKMVVTLLKALDEDGV---DSKDFVLFSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCMEHGIEGAEVVRWLAVMALVGRPFLKNANGG 557
BLAST of mRNA_Ecto-sp13_S_contig7174.18287.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 9.990e-13 Identity = 98/409 (23.96%), Postives = 160/409 (39.12%), Query Frame = 3
Query: 2031 TLRTIIVQLTSAYRLGRSENLLEAFYSLSQEECQLVEDHLRHWNGNLKCRLSVILVCWRKM*QAQPIPTWREINRIRHGIPWRGTSF*IPTYHQRRSLRVGFGTQRSTEAFNWTSWTRIHSATRGVARMYLKKRSGWFVRVQKQCTRLLEHLRKWVRTQGPWIVKLLPE---------RVAPGEPRSKSAG*GSFCRIKRQR---------SGRKTVYMFIVAMCENGCRPLMDDTLKRHPRFVEWGKERLANAKKVSAAFPYRNDVIEMLGDVPCYTRRDIEGANEGVEPRGEAPAGVL*VHLKIYLHFQRGSGTCLPVQRSLPSSPRFFLDG--GQEVVLRSKTERIHIRLPSESKR-------TTAAEKKAARACMEHELEGAEVVQWWVVMTLVGRPFLKTHNDG 3176
TLR + LT AYR GR NLLEA+ + +EC+L+++H W+ N+ L + V + +++ R +F ++ + VG G + + + R+ L F + RLLEH+ + G + K L + + G G ++++QR + + + MF+ AM NGC+ +M+ P FVE G +RL AK S F +++G G+ P V G + + + ++L DG ++ V+ S + + + R T +AE+ + CMEH +EGAE+V+W VM LVGRPFLK N G
Sbjct: 413 TLRDLSKLLTCAYRSGRPGNLLEAYQPCTLQECKLLQEHHSQWSANITHSLKSLSVRDTRSANVSDSELGGDMSYALRFALARCKTF---VHNMPPVVVVGCGIRDAAK----------------YGRVGLHSLDTTFFSHARFGPRLLEHVLGADSSHGA-VQKTLDHCHSFFQNARNLRKHVGAYTNGGVGDGIKLRKQRVPLVEDTPEAREEAMDMFMGAMSANGCQRVMEAVETIDPGFVERGLDRLTEAKTASTLF-------------------ELDGIGGEEHLLGKTPEEVA-----------EGEKSVVKLLQALEE------DGIDSEDFVVFSVATHLAMLFNGATLRPQDFFGLTESAEESLSTVCMEHGVEGAELVRWLAVMALVGRPFLKKANGG 765
BLAST of mRNA_Ecto-sp13_S_contig7174.18287.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 2.110e-8 Identity = 52/188 (27.66%), Postives = 79/188 (42.02%), Query Frame = 3
Query: 2625 VYMFIVAMCENGCRPLMDDTLKRHPRFVEWGKERLANAKKVSAAFPYR----NDVIEMLGDVPCYTRRDIEGANEGVEPRGEAPAGVL*VHLKIYLHFQRGSGTCLPVQRSLPSSPRFFLDGGQEVVLRSKTERIHIRLPSESKRTTAAEKKAARACMEHELEGAEVVQWWVVMTLVGRPFLKTHNDG 3176
V MF+ A+ NGCR +M+ + P +++ ERL A++ S + + + D +R ++ + +E G + K ++ F IRLP E K+T AEKK + CMEHE+EG +VV+W VM LVGR FL+ N G
Sbjct: 571 VRMFMEALDVNGCRRIMEAIERIDPGIIDFLLERLGRAERASTTWDSNAIGGDHLFGTTPDEVAEGKRRVDALVDALEVEG--------ITSKDFVVFM-------------------------------------IRLPDEGKQTRKAEKKESAVCMEHEVEGEDVVRWMAVMALVGRRFLEKANGG 713
BLAST of mRNA_Ecto-sp13_S_contig7174.18287.1 vs. uniprot
Match: A0A6H5J7T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7T3_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 5.980e-8 Identity = 57/153 (37.25%), Postives = 73/153 (47.71%), Query Frame = 3
Query: 1524 LLKHRNDGGVILEADQLRFILHLVTTHVNMMVHVVSCLNQSHNVTTGMPWNPAVEPNRRSQDRGKTGTEGGAGNNHQAGGFSAGPDV--EIFTKAVVEDTLPAAFWEVAGSPVTR--VREAGWIAETDKVSGRSSMRP*PRMLSGKMFKGDVV 1970
LL+ R DG V LEA+Q RF++HLVTT+VNM+ HVV P R + RGK E N + D+ +FT A V+DTLPA FWEV G+ R E G + E + + LSGK F G+VV
Sbjct: 202 LLEKRTDGVVTLEAEQRRFVIHLVTTYVNMITHVV--------------------PARLANMRGKRKEELDQIINR----VNTLRDLMLRVFTDAAVKDTLPAIFWEVYGNKDLREFAEETGSLREINFLDRLECAHN--TELSGKSFTGEVV 328
BLAST of mRNA_Ecto-sp13_S_contig7174.18287.1 vs. uniprot
Match: D7FU51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU51_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 3.660e-6 Identity = 59/202 (29.21%), Postives = 83/202 (41.09%), Query Frame = 3
Query: 2589 CRI------KRQRSGRKTVYMFIVAMCENGCRPLMDDTLKRHPRFVEWGKERLANAKKVSAAFPYRNDVIEMLGDVPCYTRRDIEGANEGVEPRGEAPAGVL*VHLKIYLHFQRGSGTCLPVQRSLPSSPRFFLDGGQEVVLRSKTERIHIRLPSESKRTTAAEKKAARACMEHELEGAEVVQWWVVMTLVGRPFLKTHNDG 3176
CRI R +YM +V + +G RP+M+ K F++WG ERLA AK VS +F R DI+G + HL GT V G+E V+ S++ + K+T A+++ AC H++EG VV+W +VM LVGR LK HN G
Sbjct: 63 CRIGLVDDSPEDRERNLEIYMRLVFV--DGIRPVMEAIDKIDSEFIDWGVERLAEAKGVSTSFD----------------RDDIKGID----------------HLF--------GGTREQV--------------GEEGVVYSRSGCLF-------KQTDDADRELCNACKVHDIEGHGVVRWCMVMALVGRTMLKKHNKG 201
BLAST of mRNA_Ecto-sp13_S_contig7174.18287.1 vs. uniprot
Match: A0A6H5L612_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L612_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 1.260e-5 Identity = 51/184 (27.72%), Postives = 79/184 (42.93%), Query Frame = 3
Query: 2634 FIVAMCENGCRPLMDDTLKRHPRFVEWGKERLANAKKVSAAFPYRNDVIEMLGDVPCYTRRD---IEGANEGVEPRGEAPAGVL*VHLKIYLHFQRGSGTCLPVQRSLPSSPRFFLDGGQEVVLRSKTERIHIRLPSESKRTTAAEKKAARACMEHELEGAEVVQWWVVMTLVGRPFLKTHNDG 3176
F ++M E RP+M+D K F G L NA S +F +LG P + I G G++ G P + L + CL + +L + ++ R+ +R P++ K++ A K + EHE+ GA+VV+W +VM VGR FL+ HN G
Sbjct: 1018 FQMSMGEK-MRPMMEDVYKHSRGFDRRGATSLMNANLESGSFDKVVGEDHLLGRTPGEVEENKAWIAGVVNGLKADGWEPRHWCGFSVVTQLGCLFNAA-CLRERSALNLA-------ANTAYYNNERGRVAMRPPAKEKQSKTANKNLSTVLREHEIHGADVVRWVMVMLFVGREFLRQHNGG 1192
BLAST of mRNA_Ecto-sp13_S_contig7174.18287.1 vs. uniprot
Match: A0A6H5JTS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS7_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 6.520e-5 Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 3
Query: 1935 MLSGKMFKGDVVRGGYAEGPPPLRKQTRVRKATLRTIIVQLTSAYRLGRSENLLEAFYSLSQEECQLVEDHLRH 2156
+LSG +F G+VV + + P + A LR++IVQLT YRLGRS N LEA+Y+LS E +L+ H H
Sbjct: 32 VLSGNLFTGEVVTEDFFDAPK--HGKYGAWHAKLRSVIVQLTCGYRLGRSANFLEAYYALSAVEVELLICHHLH 103 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7174.18287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7174.18287.1 >prot_Ecto-sp13_S_contig7174.18287.1 ID=prot_Ecto-sp13_S_contig7174.18287.1|Name=mRNA_Ecto-sp13_S_contig7174.18287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp MQALSDLGLLAEDVTSATDTDLEGDKSHTSRYTVARNQFLNPYISPATVVback to top mRNA from alignment at Ecto-sp13_S_contig7174:3136..7030+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7174.18287.1 ID=mRNA_Ecto-sp13_S_contig7174.18287.1|Name=mRNA_Ecto-sp13_S_contig7174.18287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3895bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7174:3136..7030+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7174:3136..7030+ >mRNA_Ecto-sp13_S_contig7174.18287.1 ID=mRNA_Ecto-sp13_S_contig7174.18287.1|Name=mRNA_Ecto-sp13_S_contig7174.18287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7174:3136..7030+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |