mRNA_Ecto-sp13_S_contig717.18282.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig717.18282.1
Unique NamemRNA_Ecto-sp13_S_contig717.18282.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig717.18282.1 vs. uniprot
Match: D8LHU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU3_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 4.020e-42
Identity = 111/159 (69.81%), Postives = 117/159 (73.58%), Query Frame = -3 
Query:    9 AHGDGSSSTCRKENGMPQPPADDQKGVNDGKGAEAVAVQPAGSSVPATPDGATSSDTLPPAAPQAXXXXGATDVGANGSSSASS-GAAPVTDDVAGEAIDKRKKFRTDDAEAVSAGEDAADAVVPEGVEAVSTAAEGGGATTSGTGKDMKQAAAGAATT 482
            A GDGSSSTCRKENG P+PPADD+ G NDGKGA A AVQPA SSV AT DGATS DTLPPA    XXXX                GAAPVTDDV GE I KR+K  TDDA+A +AG+DAADAVVPEGV AVSTAAEGGG T SGTGKD KQA A AATT
Sbjct:  759 AIGDGSSSTCRKENGTPRPPADDRNGKNDGKGAGAAAVQPAESSVSATADGATSLDTLPPAXXXXXXXXXXXXXXXXXXXXXXXXGAAPVTDDVTGEGIGKREKSGTDDAKAAAAGDDAADAVVPEGVRAVSTAAEGGGVTPSGTGKDTKQATADAATT 917
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BLAST of mRNA_Ecto-sp13_S_contig717.18282.1 vs. uniprot
Match: A0A6H5KG36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG36_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.690e-38
Identity = 126/192 (65.62%), Postives = 133/192 (69.27%), Query Frame = -3 
Query:    9 GAGAMPASEAGAVTSTVVEAXXXXXXXXXXXTDVAHGDGSSSTCRKENGMPQPPADDQKGVNDGKGAEAVAVQPAGSSVPATPDGATSSDTLPPAAPQAXXXXGATDVGANGSSSASSGAAPVTDDVAGEAIDKRKKFRTDDAEAVSAGEDAADAVVPEGVEAVSTAAEGGGATTSGTGKDMKQAAAGAATT 584
            G GAM ASEAGAVTSTV   XXXXXXXXXXXTDVA+GDGSSSTCRKENG P+P ADDQ G NDGKGA   AVQPA  SVPAT DGAT SDTLPPA    XXXX                            I KR+K RT+DA+A +AGED  DAVVPEGV AVSTAAEGGG T+SG GKD KQA A AATT
Sbjct:  960 GVGAMRASEAGAVTSTVXX-XXXXXXXXXXXTDVANGDGSSSTCRKENGTPRPTADDQNGSNDGKGA---AVQPAELSVPATADGATLSDTLPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIGKREKSRTNDAKAAAAGEDVTDAVVPEGVRAVSTAAEGGGVTSSGRGKDTKQATADAATT 1147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig717.18282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHU3_ECTSI4.020e-4269.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KG36_9PHAE1.690e-3865.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig717contigEcto-sp13_S_contig717:17852..18440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size589
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463982.3930717-UTR-Ecto-sp13_S_contig717:17851..178901681463982.3930717-UTR-Ecto-sp13_S_contig717:17851..17890Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig717 17852..17890 +
1681463982.4131265-UTR-Ecto-sp13_S_contig717:18265..184401681463982.4131265-UTR-Ecto-sp13_S_contig717:18265..18440Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig717 18266..18440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463982.4034853-CDS-Ecto-sp13_S_contig717:17890..182651681463982.4034853-CDS-Ecto-sp13_S_contig717:17890..18265Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig717 17891..18265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig717.18282.1prot_Ecto-sp13_S_contig717.18282.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig717 17891..18265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig717.18282.1

>prot_Ecto-sp13_S_contig717.18282.1 ID=prot_Ecto-sp13_S_contig717.18282.1|Name=mRNA_Ecto-sp13_S_contig717.18282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MSFPVPEVVAPPPSAAVDTASTPSGTTASAASSPADTASASSVRNFFRLS
IASPATSSVTGAAPLEALLLPFAPTSVAPAAAAAWGAAGGSVSDDVAPSG
VAGTLDPAGCTATASAPFPSFTPF*
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mRNA from alignment at Ecto-sp13_S_contig717:17852..18440+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig717.18282.1 ID=mRNA_Ecto-sp13_S_contig717.18282.1|Name=mRNA_Ecto-sp13_S_contig717.18282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=589bp|location=Sequence derived from alignment at Ecto-sp13_S_contig717:17852..18440+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGTTCTTGTCGTTGCGGCGCCCGCCGCCGCCTGCTTCATGTCTTTTCC
GGTACCCGAGGTAGTCGCGCCGCCTCCCTCCGCCGCAGTCGACACTGCTT
CTACCCCTTCAGGCACCACAGCGTCGGCCGCGTCTTCTCCTGCCGACACA
GCCTCCGCATCATCTGTTCGGAATTTTTTCCGCTTGTCGATCGCCTCCCC
GGCGACATCATCAGTCACCGGCGCTGCTCCGCTAGAAGCGCTGCTGCTTC
CGTTCGCGCCAACATCGGTCGCCCCTGCCGCGGCCGCCGCCTGGGGGGCG
GCTGGCGGTAGCGTGTCCGACGATGTGGCGCCGTCGGGGGTAGCGGGGAC
ACTTGATCCCGCAGGCTGCACCGCAACAGCTTCCGCGCCTTTCCCATCAT
TTACACCTTTCTGATCATCAGCGGGAGGTTGTGGCATTCCGTTCTCCTTC
CGGCAGGTGCTGCTCGAGCCGTCCCCATGAGCTACATCGGTAGCAGCAGC
AGCAGCGGCGGTAGACGAGGAGGAAGCCTCAACCACCGTAGACGTGACCG
CACCAGCCTCACTCGCTGGCATCGCCCCCGCCCCGCCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig717:17852..18440+

>mRNA_Ecto-sp13_S_contig717.18282.1 ID=mRNA_Ecto-sp13_S_contig717.18282.1|Name=mRNA_Ecto-sp13_S_contig717.18282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig717:17852..18440+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTTTCCGGTACCCGAGGTAGTCGCGCCGCCTCCCTCCGCCGCAGT
CGACACTGCTTCTACCCCTTCAGGCACCACAGCGTCGGCCGCGTCTTCTC
CTGCCGACACAGCCTCCGCATCATCTGTTCGGAATTTTTTCCGCTTGTCG
ATCGCCTCCCCGGCGACATCATCAGTCACCGGCGCTGCTCCGCTAGAAGC
GCTGCTGCTTCCGTTCGCGCCAACATCGGTCGCCCCTGCCGCGGCCGCCG
CCTGGGGGGCGGCTGGCGGTAGCGTGTCCGACGATGTGGCGCCGTCGGGG
GTAGCGGGGACACTTGATCCCGCAGGCTGCACCGCAACAGCTTCCGCGCC
TTTCCCATCATTTACACCTTTCTGA
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