mRNA_Ecto-sp13_S_contig717.18283.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig717.18283.1
Unique Name	mRNA_Ecto-sp13_S_contig717.18283.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig717.18283.1 vs. uniprot
Match: A0A6H5KG36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG36_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 9.560e-72
Identity = 128/145 (88.28%), Postives = 129/145 (88.97%), Query Frame = 1

Query:    7 RGGRAASGSRRRVSEAGGKQPKEGFGLVGKTIKLHRDDVDYPNGRWCVADVQQWSRTQQKHLLSYRGVGSAWLPPGWLKLEEKRKAQVVSVAPAASPAA-------ILNFAGHVPGVGSRSSTRCSPLDFLEAPTVVTPESQTAS 420
            RG  AASGSRRRVSEAGGKQPKEGFGLVGKTIKLHRDDVDYPNGRWCVADVQQWSRTQQKHLLSYRGVGSAWLPPGWLKLEEKRKAQVVSVAPAA  A        I    GHVPGVGSRSSTRCSPLDFLEAPTVVTP+SQTAS
Sbjct:  717 RGNPAASGSRRRVSEAGGKQPKEGFGLVGKTIKLHRDDVDYPNGRWCVADVQQWSRTQQKHLLSYRGVGSAWLPPGWLKLEEKRKAQVVSVAPAADAAHPSCDSPNISRRXGHVPGVGSRSSTRCSPLDFLEAPTVVTPKSQTAS 861

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BLAST of mRNA_Ecto-sp13_S_contig717.18283.1 vs. uniprot
Match: D8LHU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU3_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 7.670e-46
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1

Query:   34 RRRVSEAGGKQPKEGFGLVGKTIKLHRDDVDYPNGRWCVADVQQWSRTQQKHLLSYRGVGSAWLPPGWLKLEEKRKAQVVSV 279
            RRRVS+AGGKQPKEGFGLVGKTIKLHRDDVDYPNGRWCVADVQQWSRTQQKHLLSYRGVGSAWLPPGWLKLEEKRKA+VVSV
Sbjct:  573 RRRVSDAGGKQPKEGFGLVGKTIKLHRDDVDYPNGRWCVADVQQWSRTQQKHLLSYRGVGSAWLPPGWLKLEEKRKAEVVSV 654

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig717.18283.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig717.18283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KG36_9PHAE	9.560e-72	88.28	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LHU3_ECTSI	7.670e-46	97.56	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig717	contig	Ecto-sp13_S_contig717:18456..19643 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	174.5
Seed ortholog evalue	5.8e-41
Seed eggNOG ortholog	2880.D8LHU3
Preferred name	PHF6
Model size	697
KEGG rclass	RC00003,RC00060,RC00181,RC00496
KEGG ko	ko:K09186,ko:K09188,ko:K11422,ko:K14959,ko:K18494,ko:K22371
KEGG Reaction	R03875,R03938,R04866,R04867
KEGG Pathway	ko00310,ko04934,ko05202,map00310,map04934,map05202
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000122,GO:0000123,GO:0000902,GO:0000904,GO:0000976,GO:0000977,GO:0000980,GO:0000981,GO:0001012,GO:0001067,GO:0001158,GO:0001227,GO:0001541,GO:0001654,GO:0001894,GO:0002376,GO:0002520,GO:0002682,GO:0003002,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003700,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005700,GO:0005730,GO:0005737,GO:0005794,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007444,GO:0007482,GO:0007548,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0007623,GO:0007632,GO:0008023,GO:0008092,GO:0008150,GO:0008152,GO:0008157,GO:0008168,GO:0008170,GO:0008213,GO:0008270,GO:0008276,GO:0008285,GO:0008306,GO:0008354,GO:0008406,GO:0008542,GO:0008585,GO:0008757,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009952,GO:0009987,GO:0009994,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0012505,GO:0015631,GO:0016020,GO:0016043,GO:0016070,GO:0016278,GO:0016279,GO:0016458,GO:0016477,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016604,GO:0016607,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018026,GO:0018027,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019902,GO:0019903,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0030030,GO:0030097,GO:0030154,GO:0030182,GO:0030728,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031090,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032409,GO:0032411,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032784,GO:0032786,GO:0032879,GO:0032922,GO:0032968,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034968,GO:0035065,GO:0035097,GO:0035162,GO:0035216,GO:0035295,GO:0035326,GO:0035640,GO:0036211,GO:0040011,GO:0040029,GO:0042054,GO:0042127,GO:0042221,GO:0042330,GO:0042393,GO:0042592,GO:0042800,GO:0042802,GO:0042803,GO:0042826,GO:0043021,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043543,GO:0043565,GO:0043933,GO:0043966,GO:0043967,GO:0043984,GO:0044030,GO:0044085,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044648,GO:0044665,GO:0044703,GO:0044728,GO:0044877,GO:0045137,GO:0045322,GO:0045595,GO:0045637,GO:0045652,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046545,GO:0046660,GO:0046872,GO:0046914,GO:0046983,GO:0048096,GO:0048167,GO:0048168,GO:0048172,GO:0048468,GO:0048477,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048536,GO:0048568,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0048871,GO:0048872,GO:0048873,GO:0050776,GO:0050789,GO:0050793,GO:0050794,GO:0050804,GO:0050877,GO:0050890,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051219,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051674,GO:0051704,GO:0060216,GO:0060249,GO:0060255,GO:0060429,GO:0061458,GO:0061564,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070577,GO:0071339,GO:0071440,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080182,GO:0090304,GO:0097110,GO:0097159,GO:0097485,GO:0097659,GO:0099177,GO:0120036,GO:0120039,GO:0140030,GO:0140033,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901532,GO:1901564,GO:1901576,GO:1901674,GO:1901983,GO:1902036,GO:1902275,GO:1902493,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1905269,GO:1905642,GO:1990234,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000615,GO:2000736,GO:2000756,GO:2001023,GO:2001025,GO:2001038,GO:2001040,GO:2001141,GO:2001252
Exons	2
EggNOG free text desc.	SET domain
EggNOG OGs	COG2940@1,KOG1080@2759,KOG1084@2759,KOG4443@2759
EC	2.1.1.43,2.3.2.26
Cds size	696
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko03000,ko03036,ko04121

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463982.3459358-CDS-Ecto-sp13_S_contig717:18456..18861	1681463982.3459358-CDS-Ecto-sp13_S_contig717:18456..18861	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig717 18457..18861 -
1681463982.3615298-CDS-Ecto-sp13_S_contig717:19352..19643	1681463982.3615298-CDS-Ecto-sp13_S_contig717:19352..19643	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig717 19353..19643 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig717.18283.1	prot_Ecto-sp13_S_contig717.18283.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig717 18457..19643 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig717:18456..19643-
coding sequence from alignment at Ecto-sp13_S_contig717:18456..19643-

protein sequence of mRNA_Ecto-sp13_S_contig717.18283.1

>prot_Ecto-sp13_S_contig717.18283.1 ID=prot_Ecto-sp13_S_contig717.18283.1|Name=mRNA_Ecto-sp13_S_contig717.18283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=232bp
GSRGGRAASGSRRRVSEAGGKQPKEGFGLVGKTIKLHRDDVDYPNGRWCV
ADVQQWSRTQQKHLLSYRGVGSAWLPPGWLKLEEKRKAQVVSVAPAASPA
AILNFAGHVPGVGSRSSTRCSPLDFLEAPTVVTPESQTASGGGSSSSSSR
ESAAVAAAEGLAVLAAAGEAATAAAEAAVGNARRGGEEEGDASRRSGVAG
GPPAVGSGESSSAVASKDGGSAVAPLEGKGNG

mRNA from alignment at Ecto-sp13_S_contig717:18456..19643-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig717.18283.1 ID=mRNA_Ecto-sp13_S_contig717.18283.1|Name=mRNA_Ecto-sp13_S_contig717.18283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1188bp|location=Sequence derived from alignment at Ecto-sp13_S_contig717:18456..19643- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAGCCGCGGCGGCAGGGCGGCATCTGGGTCGAGGCGGAGAGTCTCGGA
AGCCGGGGGCAAGCAGCCGAAGGAAGGGTTCGGGCTGGTGGGGAAGACGA
TCAAGCTGCACAGGGACGACGTGGACTACCCGAACGGTCGGTGGTGCGTG
GCGGACGTGCAGCAGTGGAGCCGGACGCAGCAGAAGCACCTGCTGTCGTA
TCGAGGGGTGGGGTCGGCGTGGCTGCCGCCCGGGTGGCTGAAGCTGGAGG
AGAAGAGGAAGGCCCAGGTCGTGTCGGTGGCGCCCGCAGCGGTGAGGGGA
AGATTAAGGTTGCCGTCGCCCAGGACAAGCGTTCCCTCGCTGCAGGTTGT
AGCGGTGCTTAGGTTGACATTCTGTATTCGTACGGGCTGTGGCGGTACTC
TGTCGCTTCCTCAGCGTGCATTCAATCTCGGCCATATTTTCAGGAATCGC
GTGCCCTTGAGGTTGGTGTTTTGTTCCTGGCTGTTGTAGCATAGAACACG
TCGCCGCCGTATTCAGCAGCGTCTGTCGTCATTGTGCAGAAACGGTCATT
ATAACGGTGAAATCATTTACTCAGTGTCGTAACCAACCCCCTACGTGTTT
GTAGGATTTTGACTCATTTGTTTTCGGCCAGTTCTTACGATTTTCCACGC
ATGATGTGCTCCTTTCTTTTTTGCGTGCTTGAGCATGTTCTGCCTTTTGA
GATGATCCCATCAGTCGCGGGTCCCGCAACATCTGACCCCCCCCCCCCAC
CCCCCCGCCCCCCTGTTGATCGAACCCATCAGAGCCCCGCCGCCATCCTA
AACTTCGCTGGCCACGTACCGGGCGTAGGGTCTCGGAGCAGCACGCGCTG
CTCCCCCCTCGACTTCTTGGAGGCTCCGACGGTTGTCACGCCCGAAAGTC
AGACGGCGAGCGGAGGCGGCAGCAGCAGCAGCAGCAGTCGAGAATCGGCG
GCAGTCGCGGCTGCAGAAGGGCTTGCTGTGCTCGCTGCTGCGGGAGAGGC
GGCAACGGCGGCTGCTGAGGCTGCCGTGGGCAACGCTAGGCGAGGAGGGG
AGGAGGAGGGGGATGCTTCGCGACGTTCAGGGGTAGCTGGCGGTCCTCCC
GCGGTTGGAAGCGGGGAGTCATCTTCCGCCGTCGCCAGCAAGGATGGGGG
CTCCGCGGTAGCGCCTCTCGAAGGTAAGGGTAACGGTG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig717:18456..19643-

>mRNA_Ecto-sp13_S_contig717.18283.1 ID=mRNA_Ecto-sp13_S_contig717.18283.1|Name=mRNA_Ecto-sp13_S_contig717.18283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig717:18456..19643- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAGCCGCGGCGGCAGGGCGGCATCTGGGTCGAGGCGGAGAGTCTCGGA
AGCCGGGGGCAAGCAGCCGAAGGAAGGGTTCGGGCTGGTGGGGAAGACGA
TCAAGCTGCACAGGGACGACGTGGACTACCCGAACGGTCGGTGGTGCGTG
GCGGACGTGCAGCAGTGGAGCCGGACGCAGCAGAAGCACCTGCTGTCGTA
TCGAGGGGTGGGGTCGGCGTGGCTGCCGCCCGGGTGGCTGAAGCTGGAGG
AGAAGAGGAAGGCCCAGGTCGTGTCGGTGGCGCCCGCAGCGAGCCCCGCC
GCCATCCTAAACTTCGCTGGCCACGTACCGGGCGTAGGGTCTCGGAGCAG
CACGCGCTGCTCCCCCCTCGACTTCTTGGAGGCTCCGACGGTTGTCACGC
CCGAAAGTCAGACGGCGAGCGGAGGCGGCAGCAGCAGCAGCAGCAGTCGA
GAATCGGCGGCAGTCGCGGCTGCAGAAGGGCTTGCTGTGCTCGCTGCTGC
GGGAGAGGCGGCAACGGCGGCTGCTGAGGCTGCCGTGGGCAACGCTAGGC
GAGGAGGGGAGGAGGAGGGGGATGCTTCGCGACGTTCAGGGGTAGCTGGC
GGTCCTCCCGCGGTTGGAAGCGGGGAGTCATCTTCCGCCGTCGCCAGCAA
GGATGGGGGCTCCGCGGTAGCGCCTCTCGAAGGTAAGGGTAACGGT