prot_Ecto-sp13_S_contig71696.18280.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig71696.18280.1
Unique Nameprot_Ecto-sp13_S_contig71696.18280.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length107
Homology
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BLAST of mRNA_Ecto-sp13_S_contig71696.18280.1 vs. uniprot
Match: A0A6H5JN40_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN40_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 7.230e-30
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 0 
Query:    8 TTDADRYIEMLLDMCGRVMKDERQSEKEARTAVQLTMVVLHNCKGRIDEYIPPILAMLSERVRTV--SDLFSAFL 80
            + + DRYIEMLLDMCGRVMKDERQSEKEARTAVQL MVVLHNCKGRIDEYIPPILAMLSERVRT   ++L SA L
Sbjct:  727 SAEGDRYIEMLLDMCGRVMKDERQSEKEARTAVQLMMVVLHNCKGRIDEYIPPILAMLSERVRTAEQAELKSALL 801
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71696.18280.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN40_9PHAE7.230e-3084.00Importin N-terminal domain-containing protein n=2 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..99
e-value: 3.7E-6
score: 27.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71696contigEcto-sp13_S_contig71696:301..621 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71696.18280.1mRNA_Ecto-sp13_S_contig71696.18280.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig71696 301..621 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig71696.18280.1 ID=prot_Ecto-sp13_S_contig71696.18280.1|Name=mRNA_Ecto-sp13_S_contig71696.18280.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
RKTVTFETTDADRYIEMLLDMCGRVMKDERQSEKEARTAVQLTMVVLHNC
KGRIDEYIPPILAMLSERVRTVSDLFSAFLLLVEADRSVCDVRVTLAACI
WNPMRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like