mRNA_Ecto-sp13_S_contig71676.18279.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71676.18279.1
Unique NamemRNA_Ecto-sp13_S_contig71676.18279.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig71676.18279.1 vs. uniprot
Match: D8LJC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC5_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 5.150e-27
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 DKAVFSFNLDLGLLDGHRRWPVRETYVGDLMALRHRLMVSAQRPWYTFNV 150
            DKAVFSFNLDLGLLDGHRRWPVRETYVGDLMALRHRLMVSAQRPWYTFNV
Sbjct:  266 DKAVFSFNLDLGLLDGHRRWPVRETYVGDLMALRHRLMVSAQRPWYTFNV 315
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BLAST of mRNA_Ecto-sp13_S_contig71676.18279.1 vs. uniprot
Match: A0A6H5KSM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM1_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.250e-26
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 DKAVFSFNLDLGLLDGHRRWPVRETYVGDLMALRHRLMVSAQRPWYTFNV 150
            DKAVFSFNLDLGLL GHRRWPVRETYVGDLMALRHRLMVSAQRPWYTFNV
Sbjct:  229 DKAVFSFNLDLGLLSGHRRWPVRETYVGDLMALRHRLMVSAQRPWYTFNV 278
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BLAST of mRNA_Ecto-sp13_S_contig71676.18279.1 vs. uniprot
Match: A0A835YLM0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLM0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.330e-7
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   13 FSFNLDLGLLDGHRRWPVRETYVGDLMALRHRLMVSAQRPWYTFNV 150
            F  N+D     G     +RE YVGD++ALRHRL+V+A RPWYTF+V
Sbjct:  204 FVLNIDALNRGGGGGTGLREGYVGDMLALRHRLVVTAARPWYTFDV 249
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BLAST of mRNA_Ecto-sp13_S_contig71676.18279.1 vs. uniprot
Match: A0A835YXF0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXF0_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.390e-5
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    7 AVFSFNLDLGLLDGHRRWPVRETYVGDLMALRHRLMVSAQRPWYTFNV 150
                F L +  L G     +RE Y+GD++A+RH L V+A RPWYTFN+
Sbjct:  115 CTLDFILTMDDLAGMGEGGLREGYIGDMLAVRHLLTVTAARPWYTFNL 162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71676.18279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJC5_ECTSI5.150e-27100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSM1_9PHAE3.250e-2698.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLM0_9STRA8.330e-754.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXF0_9STRA1.390e-545.83Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71676contigEcto-sp13_S_contig71676:56..205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463982.2741165-CDS-Ecto-sp13_S_contig71676:55..2051681463982.2741165-CDS-Ecto-sp13_S_contig71676:55..205Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71676 56..205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71676.18279.1prot_Ecto-sp13_S_contig71676.18279.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71676 56..205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71676.18279.1

>prot_Ecto-sp13_S_contig71676.18279.1 ID=prot_Ecto-sp13_S_contig71676.18279.1|Name=mRNA_Ecto-sp13_S_contig71676.18279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
DKAVFSFNLDLGLLDGHRRWPVRETYVGDLMALRHRLMVSAQRPWYTFNV
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mRNA from alignment at Ecto-sp13_S_contig71676:56..205+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71676.18279.1 ID=mRNA_Ecto-sp13_S_contig71676.18279.1|Name=mRNA_Ecto-sp13_S_contig71676.18279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71676:56..205+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAAGGCTGTGTTTAGCTTCAACCTGGATCTCGGTCTCCTAGACGGACA
CCGAAGGTGGCCGGTGCGAGAGACGTACGTGGGGGATCTGATGGCGCTGA
GGCATAGACTGATGGTATCGGCTCAGAGACCGTGGTATACCTTCAACGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71676:56..205+

>mRNA_Ecto-sp13_S_contig71676.18279.1 ID=mRNA_Ecto-sp13_S_contig71676.18279.1|Name=mRNA_Ecto-sp13_S_contig71676.18279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71676:56..205+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAAGGCTGTGTTTAGCTTCAACCTGGATCTCGGTCTCCTAGACGGACA
CCGAAGGTGGCCGGTGCGAGAGACGTACGTGGGGGATCTGATGGCGCTGA
GGCATAGACTGATGGTATCGGCTCAGAGACCGTGGTATACCTTCAACGTC
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