mRNA_Ecto-sp13_S_contig7166.18278.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7166.18278.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI) HSP 1 Score: 156 bits (395), Expect = 4.790e-39 Identity = 74/78 (94.87%), Postives = 74/78 (94.87%), Query Frame = 3
Query: 171 MADMDRGALKAFFRSTGGVRWKRKDNWDAAAGLHVATWLGVEVNHQGRVMKLSLDKNNLQGPMPAELGALAELKELWL 404
MAD DRGALKA FRSTGGVRWKRKDNWD AA LHVATWLGVEVNHQGRVMKLSLDKNNLQGPMPAELGALAELKELWL
Sbjct: 1 MADTDRGALKALFRSTGGVRWKRKDNWDTAADLHVATWLGVEVNHQGRVMKLSLDKNNLQGPMPAELGALAELKELWL 78
BLAST of mRNA_Ecto-sp13_S_contig7166.18278.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 3.910e-19 Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 3
Query: 54 SITPTTHPRAPLQEETEGNGPKQREEVI*GLGRRSLSVHMADMDRGALKAFFRSTGGVRWKRKDNWDAAAGLHVATWLGVEVNHQGRVMKLSLDKNNLQGPMPAELGALAELKELWL 404
S P+ +P+ PL++ + R + S S ++ MDR AL A FRST G WK NW+ AGL ATW GV+VNH GRV+ LSL NNL GP+P LGAL+ELK+L++
Sbjct: 4 SFPPSCNPKQPLEQMSS----MDRVSFFRRAFQSSPSELVSSMDRAALVALFRSTDGANWKTNSNWNTDAGL--ATWEGVKVNHAGRVVGLSLPNNNLHGPIPEALGALSELKKLFM 114
BLAST of mRNA_Ecto-sp13_S_contig7166.18278.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 6.820e-19 Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 3
Query: 171 MADMDRGALKAFFRSTGGVRWKRKDNWDAAAGLHVATWLGVEVNHQGRVMKLSLDKNNLQGPMPAELGALAELKELWL 404
MA DR AL A F STGG W R+DNW+ A ATW GV+VN QGRV+ + L NNLQGP+P ELGALA+L L L
Sbjct: 1 MASKDRDALVALFCSTGGAGWTRRDNWNTDADR--ATWFGVKVNDQGRVVDVDLGSNNLQGPIPKELGALAKLASLCL 76
BLAST of mRNA_Ecto-sp13_S_contig7166.18278.1 vs. uniprot
Match: A0A6H5L6T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T0_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 7.320e-18 Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 3
Query: 165 VHMADMDRGALKAFFRSTGGVRWKRKDNWDAAAGLHVATWLGVEVNHQGRVMKLSLDKNNLQGPMPAELGALAELKELW 401
V M+ DR AL A FRSTGG W R+DNWD A L ATW GV VN QGRV+ LSL +NNLQGP+P++LG L+ L L+
Sbjct: 17 VAMSSTDREALIALFRSTGGAGWWRRDNWDTDAVL--ATWDGVNVNDQGRVVGLSLIRNNLQGPIPSKLGNLSALTALY 93
BLAST of mRNA_Ecto-sp13_S_contig7166.18278.1 vs. uniprot
Match: D8LF65_ECTSI (Hypothetical leucine-rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF65_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 3.150e-17 Identity = 44/76 (57.89%), Postives = 49/76 (64.47%), Query Frame = 3
Query: 171 MADMDRGALKAFFRSTGGVRWKRKDNWDAAAGLHVATWLGVEVNHQGRVMKLSLDKNNLQGPMPAELGALAELKEL 398
M+ MDR AL A FRST G WK NWD A L ATW GVEVN +GRV++L L NNL GP+P LG L EL L
Sbjct: 1 MSTMDRAALIALFRSTDGANWKTNSNWDTDAEL--ATWAGVEVNDEGRVVQLILPDNNLHGPIPEALGTLNELTHL 74
BLAST of mRNA_Ecto-sp13_S_contig7166.18278.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 6.670e-17 Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 3
Query: 171 MADMDRGALKAFFRSTGGVRWKRKDNWDAAAGLHVATWLGVEVNHQGRVMKLSLDKNNLQGPMPAELGALAELKEL 398
MA DR AL A FRSTGG W +KDNWD AA +ATW GV+VN +GRV+KL L NNL+GP+P +LG L+ L+ L
Sbjct: 1 MALTDRDALVALFRSTGGASWDKKDNWDTAA--EIATWSGVQVNDEGRVVKLRLKSNNLRGPIPPQLGNLSFLESL 74
BLAST of mRNA_Ecto-sp13_S_contig7166.18278.1 vs. uniprot
Match: A0A6H5KQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP2_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 8.000e-17 Identity = 45/76 (59.21%), Postives = 50/76 (65.79%), Query Frame = 3
Query: 171 MADMDRGALKAFFRSTGGVRWKRKDNWDAAAGLHVATWLGVEVNHQGRVMKLSLDKNNLQGPMPAELGALAELKEL 398
M DR AL + FRSTGG W R+DNWD A L ATW GV VN QGRV+ L L NNLQG +P ELG LA L+ L
Sbjct: 1 MVSTDREALVSLFRSTGGAGWIRRDNWDTDADL--ATWNGVNVNVQGRVVNLDLQYNNLQGSIPPELGKLAALRAL 74
BLAST of mRNA_Ecto-sp13_S_contig7166.18278.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 1.150e-16 Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 3
Query: 171 MADMDRGALKAFFRSTGGVRWKRKDNWDAAAGLHVATWLGVEVNHQGRVMKLSLDKNNLQGPMPAELGALAELKEL 398
MA DR AL A FRSTGG W+++ NWD A + ATW GVEVN QGRV+ LSL N+L+G +P ELGAL+EL+EL
Sbjct: 1 MASTDREALVALFRSTGGAGWRQRGNWDTDAAI--ATWHGVEVNAQGRVVNLSLGGNSLRGHIPPELGALSELQEL 74
BLAST of mRNA_Ecto-sp13_S_contig7166.18278.1 vs. uniprot
Match: A0A6H5JA93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA93_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 2.530e-16 Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 3
Query: 192 ALKAFFRSTGGVRWKRKDNWDAAAGLHVATWLGVEVNHQGRVMKLSLDKNNLQGPMPAELGALAELKELWL 404
AL A F ST G WKRK NW+ AGL ATW GV +NH GRV++L+L NNL G +P LGAL+ELK L+L
Sbjct: 56 ALIALFHSTDGANWKRKRNWNTDAGL--ATWEGVRLNHAGRVVELALPNNNLHGSIPEALGALSELKVLYL 124
BLAST of mRNA_Ecto-sp13_S_contig7166.18278.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 8.520e-16 Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query: 171 MADMDRGALKAFFRSTGGVRWKRKDNWDAAAGLHVATWLGVEVNHQGRVMKLSLDKNNLQGPMPAELGALAELKE 395
MA DR AL A +R+TGG W+ NWD A L TW GV+VN QGRV+KL L NNL+G +PA LG LA L++
Sbjct: 1 MAQTDRDALVALYRATGGENWRESQNWDTDADLK--TWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQLANLQQ 73 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7166.18278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7166.18278.1 >prot_Ecto-sp13_S_contig7166.18278.1 ID=prot_Ecto-sp13_S_contig7166.18278.1|Name=mRNA_Ecto-sp13_S_contig7166.18278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp MADMDRGALKAFFRSTGGVRWKRKDNWDAAAGLHVATWLGVEVNHQGRVMback to top mRNA from alignment at Ecto-sp13_S_contig7166:2637..6928- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7166.18278.1 ID=mRNA_Ecto-sp13_S_contig7166.18278.1|Name=mRNA_Ecto-sp13_S_contig7166.18278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4292bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7166:2637..6928- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7166:2637..6928- >mRNA_Ecto-sp13_S_contig7166.18278.1 ID=mRNA_Ecto-sp13_S_contig7166.18278.1|Name=mRNA_Ecto-sp13_S_contig7166.18278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7166:2637..6928- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |