mRNA_Ecto-sp13_S_contig71632.18274.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71632.18274.1
Unique NamemRNA_Ecto-sp13_S_contig71632.18274.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig71632.18274.1 vs. uniprot
Match: A0A6H5KHS7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS7_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 4.350e-44
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1
Query:   10 AEDQPQNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYRVPVFPGQTLCVHFFEPRYKLMMQRIINTSRR 240
            AEDQPQNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFY VPVFPGQTLCVHFFEPRYKLMMQRIINTSRR
Sbjct:   77 AEDQPQNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYSVPVFPGQTLCVHFFEPRYKLMMQRIINTSRR 153          
BLAST of mRNA_Ecto-sp13_S_contig71632.18274.1 vs. uniprot
Match: D8LI81_ECTSI (Lon N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI81_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 4.510e-39
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 1
Query:   34 MLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYRVPVFPGQTLCVHFFEPRYKLMMQRIINTSRR 240
            MLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFY VPVFPGQTLCVHFFEPRYKLMMQRIINTSRR
Sbjct:    1 MLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYNVPVFPGQTLCVHFFEPRYKLMMQRIINTSRR 69          
BLAST of mRNA_Ecto-sp13_S_contig71632.18274.1 vs. uniprot
Match: D8LDP9_ECTSI (Kinase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP9_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.890e-28
Identity = 49/77 (63.64%), Postives = 63/77 (81.82%), Query Frame = 1
Query:   10 AEDQPQNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYRVPVFPGQTLCVHFFEPRYKLMMQRIINTSRR 240
            AEDQP++VMLA IA++ FPEL   RL+E EAE+ KF   LP F+Y VP+FPG++L +H FEPRYKLMM+R++NTSRR
Sbjct:   85 AEDQPEDVMLANIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRR 161          
BLAST of mRNA_Ecto-sp13_S_contig71632.18274.1 vs. uniprot
Match: A0A835ZAH9_9STRA (PUA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAH9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.430e-24
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   10 AEDQPQNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYRVPVFPGQTLCVHFFEPRYKLMMQRIINTSRR 240
            A+DQP+NVM+AQIA++ FP+L   RLRET+ EKA      P F+Y VP+FPG+ L +H FEPRY+LMM+RII+T+RR
Sbjct:   25 AQDQPENVMVAQIARAAFPQLYLERLRETQTEKAALRSIHPIFYYNVPMFPGEILSLHLFEPRYRLMMRRIIDTTRR 101          
BLAST of mRNA_Ecto-sp13_S_contig71632.18274.1 vs. uniprot
Match: A0A4D9DDG8_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDG8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.190e-20
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   10 AEDQPQNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYRVPVFPGQTLCVHFFEPRYKLMMQRIINTSRR 240
            AED  +  +L ++AK  FP L E+RL ET  E+   +L LP FFY +P+FPG+ L +H FEPRY+LMMQRI+N SRR
Sbjct:  141 AEDHAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRR 217          
BLAST of mRNA_Ecto-sp13_S_contig71632.18274.1 vs. uniprot
Match: A0A6U2J5U5_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2J5U5_HEMAN)

HSP 1 Score: 74.3 bits (181), Expect = 5.200e-14
Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   13 EDQPQNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYRVPVFPGQTLCVHFFEPRYKLMMQRIINTSRR 240
            E   + + L+ +AK++FP+  ++R+ E +AEKA ++  LP FFY   +FP   L ++ FEPRYK+M+ RI+ +SRR
Sbjct:   63 ETHSETIALSSVAKAVFPKAYQQRILEVQAEKASWDTILPIFFYNDTLFPFSPLALNLFEPRYKVMLHRIVESSRR 138          
BLAST of mRNA_Ecto-sp13_S_contig71632.18274.1 vs. uniprot
Match: A0A482RY16_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY16_9ARCH)

HSP 1 Score: 72.0 bits (175), Expect = 3.290e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   10 AEDQPQNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYRVPVFPGQTLCVHFFEPRYKLMMQRIINTSR 237
            AE+  +N+M+  +A +L PE    RL E E EK+ +    P F+Y   +FPG  L +  FEPRYKLMM+RII+T+R
Sbjct:   85 AENAAENIMVKTLAMALDPETYRSRLLEAEGEKSSWTALYPIFYYNSILFPGNKLSLVLFEPRYKLMMRRIIDTTR 160          
BLAST of mRNA_Ecto-sp13_S_contig71632.18274.1 vs. uniprot
Match: L1JVD8_GUITC (Lon N-terminal domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JVD8_GUITC)

HSP 1 Score: 64.3 bits (155), Expect = 2.080e-10
Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   25 QNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYRVPVFPGQTLCVHFFEPRYKLMMQRIINTSRR 240
            +N+ +  I ++ FP+  + R+ E + E+  +E  LP FFY   ++P   L +H FEPRYK+M++RI+  SR+
Sbjct:    4 ENITIVNILRNCFPDQYQARIDELQHERNAWENILPIFFYNDTLYPYSPLVLHLFEPRYKIMIKRIVQASRK 75          
BLAST of mRNA_Ecto-sp13_S_contig71632.18274.1 vs. uniprot
Match: A0A4S4LJX0_9AGAM (RING-type domain-containing protein n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4LJX0_9AGAM)

HSP 1 Score: 58.2 bits (139), Expect = 5.120e-8
Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 1
Query:   13 EDQPQNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYRVPVFPGQTLCVHFFEPRYKLMMQRIINT 231
            +D P N ++  +    FPE+ E R R  E E+    L  P F Y++  FPG    +HFFEPRY+LM++R + +
Sbjct:  426 QDHPYNKVILALLLKAFPEIYEERGRSIEDEERNTRLDTPIFVYQLS-FPGMPTLLHFFEPRYRLMLRRCLES 497          
BLAST of mRNA_Ecto-sp13_S_contig71632.18274.1 vs. uniprot
Match: A0A8H6IAX4_9AGAR (PUA-like domain-containing protein n=2 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H6IAX4_9AGAR)

HSP 1 Score: 56.2 bits (134), Expect = 2.450e-7
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   13 EDQPQNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYRVPVFPGQTLCVHFFEPRYKLMMQRIINTSR 237
            +D P N  + Q+    FP + E R    E E+   EL  P F   + VFPGQ + +H FEPRY+LM++R ++++R
Sbjct:  230 QDHPINNTIYQLILKAFPGVYEARKEAIEQEERDAELDTPIFVAML-VFPGQPVTLHIFEPRYRLMLRRCLDSNR 303          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71632.18274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHS7_9PHAE4.350e-4498.70RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LI81_ECTSI4.510e-3998.55Lon N-terminal domain-containing protein n=1 Tax=E... [more]
D8LDP9_ECTSI3.890e-2863.64Kinase, putative n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A835ZAH9_9STRA6.430e-2459.74PUA-like domain-containing protein n=1 Tax=Tribone... [more]
A0A4D9DDG8_9STRA3.190e-2054.55RING-type domain-containing protein n=2 Tax=Monodo... [more]
A0A6U2J5U5_HEMAN5.200e-1442.11Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A482RY16_9ARCH3.290e-1346.05RING-type domain-containing protein n=1 Tax=archae... [more]
L1JVD8_GUITC2.080e-1037.50Lon N-terminal domain-containing protein n=2 Tax=G... [more]
A0A4S4LJX0_9AGAM5.120e-838.36RING-type domain-containing protein n=1 Tax=Phelli... [more]
A0A8H6IAX4_9AGAR2.450e-738.67PUA-like domain-containing protein n=2 Tax=Tuloses... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71632contigEcto-sp13_S_contig71632:170..412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score139.0
Seed ortholog evalue9.5e-31
Seed eggNOG ortholog2880.D8LI81
Model size243
KEGG koko:K20779
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000151,GO:0000209,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0003674,GO:0003682,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006302,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006955,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010212,GO:0010390,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016064,GO:0016444,GO:0016445,GO:0016447,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019724,GO:0019787,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031491,GO:0031593,GO:0031974,GO:0031981,GO:0032182,GO:0032446,GO:0032501,GO:0032502,GO:0032784,GO:0032785,GO:0032879,GO:0032880,GO:0032991,GO:0033522,GO:0033554,GO:0034243,GO:0034244,GO:0034641,GO:0034644,GO:0035518,GO:0035861,GO:0036211,GO:0036351,GO:0036352,GO:0042113,GO:0042393,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045190,GO:0045321,GO:0045739,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046649,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051276,GO:0051603,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070530,GO:0070534,GO:0070535,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0104004,GO:0140030,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:1990234,GO:1990391,GO:2000112,GO:2000113,GO:2001020,GO:2001022,GO:2001141
Exons1
EggNOG free text desc.histone H2A-K13 ubiquitination
EggNOG OGsCOG2802@1,KOG4159@2759
EC2.3.2.31
Cds size243
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463981.8738096-CDS-Ecto-sp13_S_contig71632:169..4121681463981.8738096-CDS-Ecto-sp13_S_contig71632:169..412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71632 170..412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71632.18274.1prot_Ecto-sp13_S_contig71632.18274.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71632 170..412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71632.18274.1

>prot_Ecto-sp13_S_contig71632.18274.1 ID=prot_Ecto-sp13_S_contig71632.18274.1|Name=mRNA_Ecto-sp13_S_contig71632.18274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
SSRAEDQPQNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYRV
PVFPGQTLCVHFFEPRYKLMMQRIINTSRR*
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mRNA from alignment at Ecto-sp13_S_contig71632:170..412+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71632.18274.1 ID=mRNA_Ecto-sp13_S_contig71632.18274.1|Name=mRNA_Ecto-sp13_S_contig71632.18274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71632:170..412+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTAGCAGGGCGGAGGATCAACCGCAAAACGTGATGCTAGCGCAGATCGC GAAGTCGCTCTTCCCCGAGCTGCTGGAGCGGCGATTGCGCGAGACGGAAG CAGAAAAGGCCAAGTTCGAGCTGTGCCTGCCCGCGTTCTTCTACAGGGTG CCCGTGTTCCCCGGGCAGACTCTATGCGTCCACTTCTTCGAGCCCCGCTA CAAGCTTATGATGCAGCGCATCATCAACACAAGCCGAAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71632:170..412+

>mRNA_Ecto-sp13_S_contig71632.18274.1 ID=mRNA_Ecto-sp13_S_contig71632.18274.1|Name=mRNA_Ecto-sp13_S_contig71632.18274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71632:170..412+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTAGCAGGGCGGAGGATCAACCGCAAAACGTGATGCTAGCGCAGATCGC
GAAGTCGCTCTTCCCCGAGCTGCTGGAGCGGCGATTGCGCGAGACGGAAG
CAGAAAAGGCCAAGTTCGAGCTGTGCCTGCCCGCGTTCTTCTACAGGGTG
CCCGTGTTCCCCGGGCAGACTCTATGCGTCCACTTCTTCGAGCCCCGCTA
CAAGCTTATGATGCAGCGCATCATCAACACAAGCCGAAGGTAA
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