mRNA_Ecto-sp13_S_contig7162.18272.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7162.18272.1
Unique NamemRNA_Ecto-sp13_S_contig7162.18272.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7162.18272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7162contigEcto-sp13_S_contig7162:5194..5915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size722
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463981.698647-UTR-Ecto-sp13_S_contig7162:5193..52051681463981.698647-UTR-Ecto-sp13_S_contig7162:5193..5205Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7162 5194..5205 +
1681463981.722404-UTR-Ecto-sp13_S_contig7162:5352..59151681463981.722404-UTR-Ecto-sp13_S_contig7162:5352..5915Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7162 5353..5915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463981.7127357-CDS-Ecto-sp13_S_contig7162:5205..53521681463981.7127357-CDS-Ecto-sp13_S_contig7162:5205..5352Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7162 5206..5352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7162.18272.1prot_Ecto-sp13_S_contig7162.18272.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7162 5206..5352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7162.18272.1

>prot_Ecto-sp13_S_contig7162.18272.1 ID=prot_Ecto-sp13_S_contig7162.18272.1|Name=mRNA_Ecto-sp13_S_contig7162.18272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
MTKNLLAPCESLRLCFRSDLPGKELKGELFGWGSKVDKAPHCTEAAQS*
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mRNA from alignment at Ecto-sp13_S_contig7162:5194..5915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7162.18272.1 ID=mRNA_Ecto-sp13_S_contig7162.18272.1|Name=mRNA_Ecto-sp13_S_contig7162.18272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=722bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7162:5194..5915+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACGCTCCAGCATGACGAAGAACTTGTTGGCACCTTGCGAGAGCTTGAG
ACTTTGCTTCCGAAGCGATCTCCCAGGTAAAGAGTTAAAGGGGGAACTTT
TTGGGTGGGGGTCAAAAGTCGACAAAGCACCGCATTGTACCGAGGCGGCG
CAATCGTGAACTTTCGGGCAGCCGGGGATGGTTTGTGGTCTTGTGTTGAC
TGTTGCTTTGTGTGTTTGCGGTGCGTGTCAAGTGACCGTTGCCTTCTTCA
ATAGTCTTTTCTCCCACGACTACCTGGCAGTATGCATACTGTAGACGACA
CAAGATAACACACCCCGGTGATGACATTTTGAGCTTTAAAAATATAATCC
CCGCGTGTGGTATTCTCGGGTGTGGTATCTCTTTCAGCCCGGGTGATAAA
GTGCAGCTCGCAGGGGTCCGTCCATAAGGGGTGTGTGATAAACCCGGGTG
TGTAATAGCACGTCCGAACACCCACAGGGTGTGTTTGGGGGTGCGATAAA
TGGGTTTTTGTGCTGAAAACGGGGCGTGATAACACTGCTTGTAAGGCGAT
GCGTTGCAGTCATGTTGGCGCCTTGGTAGCTGTTGTTCCAGCTGCTGTTG
CTACAAGAGATCAGTAGCAGGAGGACGAGCCGTAACAGGAGCCGCTTGCG
TAGAAGAAGTGTGCTCGCGTTGAAAGAACGAGGTGATCAGTGGCGCTCGT
GCTGCTGCGGTCGAAGCAGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7162:5194..5915+

>mRNA_Ecto-sp13_S_contig7162.18272.1 ID=mRNA_Ecto-sp13_S_contig7162.18272.1|Name=mRNA_Ecto-sp13_S_contig7162.18272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7162:5194..5915+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAAGAACTTGTTGGCACCTTGCGAGAGCTTGAGACTTTGCTTCCG
AAGCGATCTCCCAGGTAAAGAGTTAAAGGGGGAACTTTTTGGGTGGGGGT
CAAAAGTCGACAAAGCACCGCATTGTACCGAGGCGGCGCAATCGTGA
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