mRNA_Ecto-sp13_S_contig7161.18270.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7161.18270.1
Unique NamemRNA_Ecto-sp13_S_contig7161.18270.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7161.18270.1 vs. uniprot
Match: A0A6H5JX29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX29_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.370e-38
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 1 
Query:    1 MYSAYGLGALKAAAPFVGTIALVFAVAHCLDRAHEAEDAPKAAPKSTQGGGTTAKPTATTPAIPKRRRIAD 213
            MYSAYGLGA+KAAAPFVGT+ALVFAVAHCLDRAHEAED  KAAPKSTQGGGTTAKPTATTPAIPKRRRIAD
Sbjct:   25 MYSAYGLGAVKAAAPFVGTVALVFAVAHCLDRAHEAEDTAKAAPKSTQGGGTTAKPTATTPAIPKRRRIAD 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7161.18270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JX29_9PHAE7.370e-3894.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7161contigEcto-sp13_S_contig7161:6754..7507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size216
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_003430.1
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463981.5427446-CDS-Ecto-sp13_S_contig7161:6753..68261681463981.5427446-CDS-Ecto-sp13_S_contig7161:6753..6826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7161 6754..6826 +
1681463981.557798-CDS-Ecto-sp13_S_contig7161:7364..75071681463981.557798-CDS-Ecto-sp13_S_contig7161:7364..7507Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7161 7365..7507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7161.18270.1prot_Ecto-sp13_S_contig7161.18270.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7161 6754..7507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7161.18270.1

>prot_Ecto-sp13_S_contig7161.18270.1 ID=prot_Ecto-sp13_S_contig7161.18270.1|Name=mRNA_Ecto-sp13_S_contig7161.18270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
MYSAYGLGALKAAAPFVGTIALVFAVAHCLDRAHEAEDAPKAAPKSTQGG
GTTAKPTATTPAIPKRRRIAD*
back to top

mRNA from alignment at Ecto-sp13_S_contig7161:6754..7507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7161.18270.1 ID=mRNA_Ecto-sp13_S_contig7161.18270.1|Name=mRNA_Ecto-sp13_S_contig7161.18270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=754bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7161:6754..7507+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTCCGCCTACGGCCTCGGAGCTTTGAAAGCGGCAGCTCCTTTCGT
CGGAACCATTGCACTGGTTTTCGGTGAGTGCAGAATCTCACATGCAAGTA
TGTAGTCGGAGGCAGTACGCACTTGTCTGTGTTTGCTTGTCTAGCTAGAG
ATGCGCGGTACTAGTCACCCGCCCTGCTCTATATCTCTCTCACTAGTACC
GCGCATTGCTATATGAAGCTGATGTCACCACTAGGTGGCCATGCATGTTC
TGTTCCTTCTGCTTTCACCTTTCAGCGGTGTACAGGAGCACCACTTTAAG
GTAGGCACCATCATCATCAAAAGCGGCGTACCTGGATCAACGCCGAGCAG
AACGCATAAGCACAGAGTGGATGCTGCCATTCGTCGAGTGACAATACCTG
TTATACGTTCTCTCTCGCCGTTCCCACCGAGAACCACAACATAAGTAGCC
TATCATACACCGGACACCCCATTGGCACATGCATCCAACGCAAAAATTCT
CGGCTTTTTCTCGCGGGCATCATCCGGATGCCGGCCGTCGTTTTAACTTT
GTTGTTGCTGTTCGTTCGCATCATCTGTTCTTGAACCGTTCCTTACCTCC
GATTTTGGAAGCTGTCGCACATTGCCTCGACCGAGCGCACGAAGCGGAAG
ACGCACCGAAAGCGGCACCGAAATCTACACAAGGGGGGGGTACGACAGCG
AAACCAACGGCAACCACCCCGGCGATACCTAAGCGCCGCCGAATAGCAGA
TTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7161:6754..7507+

>mRNA_Ecto-sp13_S_contig7161.18270.1 ID=mRNA_Ecto-sp13_S_contig7161.18270.1|Name=mRNA_Ecto-sp13_S_contig7161.18270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7161:6754..7507+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTCCGCCTACGGCCTCGGAGCTTTGAAAGCGGCAGCTCCTTTCGT
CGGAACCATTGCACTGGTTTTCGCTGTCGCACATTGCCTCGACCGAGCGC
ACGAAGCGGAAGACGCACCGAAAGCGGCACCGAAATCTACACAAGGGGGG
GGTACGACAGCGAAACCAACGGCAACCACCCCGGCGATACCTAAGCGCCG
CCGAATAGCAGATTGA
back to top