mRNA_Ecto-sp13_S_contig7161.18269.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig7161.18269.1
Unique Name	mRNA_Ecto-sp13_S_contig7161.18269.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig7161.18269.1 vs. uniprot
Match: D8LMS2_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS2_ECTSI)

HSP 1 Score: 427 bits (1099), Expect = 1.000e-146
Identity = 216/220 (98.18%), Postives = 218/220 (99.09%), Query Frame = 2

Query:  206 MLVATVALRGGVLASSNPLELNGGSCLAMAGNGCVALAVDRRFGLEGQLVSTEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPITPAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGKPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITDEGIETRELTTRMD 865
            MLVATVALRGGVLASSNPLELNGGSCLAMAG GCVALAVDRRFGLEGQLVSTEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPI PAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRG+PYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLIT+EGIETRELTTRMD
Sbjct:    1 MLVATVALRGGVLASSNPLELNGGSCLAMAGKGCVALAVDRRFGLEGQLVSTEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPIAPAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGRPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITEEGIETRELTTRMD 220

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BLAST of mRNA_Ecto-sp13_S_contig7161.18269.1 vs. uniprot
Match: A0A6H5JNZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ3_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 1.570e-71
Identity = 120/142 (84.51%), Postives = 121/142 (85.21%), Query Frame = 2

Query:  440 MQDLSSEVALKSLAEADRPITPAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGKPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITDEGIETRELTTRMD 865
            MQDLSSEVALKSLAEADRPI PAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGKPYLCGQ                    SLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLIT+EGIETRELTTRMD
Sbjct:    1 MQDLSSEVALKSLAEADRPIAPAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGKPYLCGQ--------------------SLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITEEGIETRELTTRMD 122

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BLAST of mRNA_Ecto-sp13_S_contig7161.18269.1 vs. uniprot
Match: A0A835YVV6_9STRA (Proteasome beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVV6_9STRA)

HSP 1 Score: 229 bits (585), Expect = 5.180e-69
Identity = 122/217 (56.22%), Postives = 157/217 (72.35%), Query Frame = 2

Query:  206 MLVATVALRGGVLASS-NPLELNGGSCLAMAGNGCVALAVDRRFGLEGQLVSTEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPITPAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGKPYLCGQDILGAPVEVDD-FVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITDEGIETREL 850
            +L+   AL G  LA   +PLELNGGSCL MAG  C+A+AVD+RFG   +LVS  A+RVLK++ +LLC FTGL TDV T+MQDL++  A  ++ E  RP+ PAA A LLS++LY+RR SP+F E IVAGL    + ++   D+LGA    +D F V GTSA+SLYG CEAF+RP M  EEL   A  CL++ALERDCLSG+G VVHL+T++GI +REL
Sbjct:   15 LLLVGAALVGAALAQQQSPLELNGGSCLVMAGRKCLAVAVDKRFGKGNELVSDNARRVLKLHSRLLCAFTGLTTDVQTLMQDLAAAAASYTITEG-RPLQPAAAAALLSSMLYARRRSPYFCETIVAGLTRSAEAFVRSHDVLGAAGGAEDGFAVMGTSAESLYGLCEAFYRPDMTPEELADTAEHCLVAALERDCLSGHGVVVHLLTEQGISSREL 230

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BLAST of mRNA_Ecto-sp13_S_contig7161.18269.1 vs. uniprot
Match: M2W804_GALSU (Proteasome subunit beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W804_GALSU)

HSP 1 Score: 220 bits (561), Expect = 7.580e-66
Identity = 108/202 (53.47%), Postives = 146/202 (72.28%), Query Frame = 2

Query:  260 LELNGGSCLAMAGNGCVALAVDRRFGLEGQLVSTEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPITPAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGKPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITDEGIETRELTTRMD 865
            L  NGG  LAMAG+ CVA+A DRRFG++   + T+  R+ K+N +L+ G TGL TDV T+       + L  L E +R I PA+ A ++++ LYSRR SP+FVEP+VAGL  +G+PYLC QD+LGAP+  +DFVV+GT A+SLYGT E F++P +   ELF V S+ LL+A++RDCLSG+GA+VH+IT  GIET+ L  RMD
Sbjct:    6 LTYNGGCVLAMAGDNCVAIAADRRFGVQQTTIGTDTTRIFKINDRLMLGLTGLRTDVTTLYNRFVQRLNLYRLRE-EREIKPASFANMVASTLYSRRFSPYFVEPVVAGLTEKGEPYLCAQDLLGAPLFAEDFVVSGTCAESLYGTSETFWKPNLSPAELFEVTSQSLLAAVDRDCLSGWGAIVHMITLNGIETKVLKARMD 206

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BLAST of mRNA_Ecto-sp13_S_contig7161.18269.1 vs. uniprot
Match: M1V7D3_CYAM1 (20S core proteasome subunit beta 3 n=2 Tax=cellular organisms TaxID=131567 RepID=M1V7D3_CYAM1)

HSP 1 Score: 211 bits (538), Expect = 2.050e-62
Identity = 102/204 (50.00%), Postives = 140/204 (68.63%), Query Frame = 2

Query:  254 NPLELNGGSCLAMAGNGCVALAVDRRFGLEGQLVSTEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPITPAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGKPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITDEGIETRELTTRMD 865
            NPL  NGG+  A  GN CVA+A DRRFG     ++ +A R+ +V+ +L+ G TGL TD LT+ + +     L  L E   P  PA ++ L+S LLY RR +P+FVEP++ GL    KPY C  D+LG P+E D+FV AGT A+SLYGT E F+RPG++ E+LF V ++C+L+AL+RDCLSG+GAVV+++  EG+  REL  RMD
Sbjct:    5 NPLHYNGGAVFAATGNQCVAIAADRRFGQAQLTLACDANRLFRVHDRLVLGLTGLATDCLTLAERVRMRTNLYRLGEKREP-KPATISALVSALLYERRFAPYFVEPVIVGLSGDNKPYCCSMDLLGTPMETDEFVAAGTCAESLYGTGETFWRPGLDPEDLFEVTAQCMLAALDRDCLSGWGAVVYVLHSEGVTVRELKARMD 207

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BLAST of mRNA_Ecto-sp13_S_contig7161.18269.1 vs. uniprot
Match: A0A3P3Y3V5_PLABS (Proteasome subunit beta n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y3V5_PLABS)

HSP 1 Score: 209 bits (533), Expect = 1.030e-61
Identity = 97/202 (48.02%), Postives = 145/202 (71.78%), Query Frame = 2

Query:  260 LELNGGSCLAMAGNGCVALAVDRRFGLEGQLVSTEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPITPAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGKPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITDEGIETRELTTRMD 865
            LE NG + +AM G  CVA+A D R+G++ Q V+T+ +++ K++ +L  G +GL TD+ TV   L  ++ L  L E +R I P   A L+ST+LYS+R  P+FVEP+VAG+D +GKP++C  D++GAPV  +DFVV+GT+++ LYGTCE+ + P +  EELF   S+ LL+A++RDCLSG+GA VH+IT +G+ +R+L  R D
Sbjct:    4 LEYNGSAIVAMVGKDCVAIASDTRYGVQAQTVATDMEKIFKMHDRLYVGLSGLATDMQTVRNTLQFQLKLYKLRE-EREIEPHVFANLVSTMLYSKRFGPYFVEPVVAGIDKKGKPFICAMDLIGAPVFAEDFVVSGTASEELYGTCESLYTPNLGPEELFETVSQALLAAVDRDCLSGWGATVHIITKDGVTSRKLKCRQD 204

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BLAST of mRNA_Ecto-sp13_S_contig7161.18269.1 vs. uniprot
Match: D2V9R9_NAEGR (Proteasome subunit beta n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V9R9_NAEGR)

HSP 1 Score: 209 bits (532), Expect = 1.500e-61
Identity = 96/203 (47.29%), Postives = 143/203 (70.44%), Query Frame = 2

Query:  260 LELNGGSCLAMAGNGCVALAVDRRFGLEGQLVSTEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPITPAALAGLLSTLLYSRRGSPWFVEPIVAGLD-PRGKPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITDEGIETRELTTRMD 865
            LE NG   +AM G  CVA+A D R+G+  Q V T+ +++ K++ +L  G  GL TDV TV + L   + + +L E +R I P++ A L+S +LY +R  PWF+EP++AGL+ P  KP++C QD++GAP   D+FVV+GT +++LYG CE+ ++P ME E+LF V S+CLL+A++RDC+SG+GAVVH+IT + I T+ L  R D
Sbjct:    4 LEYNGAGIVAMTGKNCVAIAADTRYGIRQQTVGTDMQKIFKIHDKLFIGLNGLATDVQTVNEKLKFRMNMYNLKE-ERDIKPSSFANLMSNILYEKRFGPWFIEPVIAGLEGPENKPFICAQDLIGAPCFTDNFVVSGTCSEALYGMCESLYKPDMEPEDLFEVISQCLLAAVDRDCISGWGAVVHVITPDSITTKRLKVRQD 205

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BLAST of mRNA_Ecto-sp13_S_contig7161.18269.1 vs. uniprot
Match: A0A7S2XNS4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNS4_9STRA)

HSP 1 Score: 207 bits (527), Expect = 8.000e-61
Identity = 101/202 (50.00%), Postives = 140/202 (69.31%), Query Frame = 2

Query:  260 LELNGGSCLAMAGNGCVALAVDRRFGLEGQLVSTEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPITPAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGKPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITDEGIETRELTTRMD 865
            LE NG + +AMAG  CV +A D R G++ Q V+T+ K+V K+N +L CG  GL +DV T+ Q L     L  L E +R +TP   + LLSTLLY +R  P+FVEPIVAGLD +GKP+L G D++GAPV  DDFVV+GT   ++YG CE  ++P ME ++LF   ++ LL++++RD LSG+G VVH+IT +G+ +REL  R D
Sbjct:    4 LEYNGAAIIAMAGKDCVGIAADTRLGVQAQTVATDFKKVFKMNDRLFCGLAGLASDVQTLDQLLKFRQNLYELRE-EREMTPEVFSNLLSTLLYEKRFGPYFVEPIVAGLDNKGKPFLSGMDLIGAPVYTDDFVVSGTCTGNMYGMCETLYKPDMEPDQLFETLAQALLASVDRDALSGWGGVVHIITKDGVTSRELKGRQD 204

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BLAST of mRNA_Ecto-sp13_S_contig7161.18269.1 vs. uniprot
Match: A0A7S3K6H9_9STRA (Proteasome subunit beta n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K6H9_9STRA)

HSP 1 Score: 204 bits (520), Expect = 8.730e-60
Identity = 101/202 (50.00%), Postives = 142/202 (70.30%), Query Frame = 2

Query:  260 LELNGGSCLAMAGNGCVALAVDRRFGLEGQLVSTEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPITPAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGKPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITDEGIETRELTTRMD 865
            LE NG + +AMAG  CVA+A D RFGL  Q V+ + ++V K++ ++  G  GL TDV T+   L  ++AL  L E +R + P A A LLS +LY +R  P+FVEP+VAGL   G P+LCG D++GAPV  +DFVV+GT A +L G CE+FFRP ME ++LF   S+CLL++++RD LSG+GA+VH+IT +G+ ++ L  RMD
Sbjct:    4 LEHNGAAIVAMAGKNCVAIASDTRFGLRQQTVTCDFEKVFKMSDKIYVGLAGLATDVQTLRATLKFKLALYKLRE-ERKMKPEAFAALLSHMLYEKRFGPYFVEPLVAGLKEDGTPFLCGMDLIGAPVFTNDFVVSGTCASNLNGLCESFFRPDMEPDDLFETISQCLLASVDRDALSGWGAIVHVITPQGVTSKRLKARMD 204

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BLAST of mRNA_Ecto-sp13_S_contig7161.18269.1 vs. uniprot
Match: A0A6A5BQY2_NAEFO (Proteasome subunit beta n=3 Tax=Naegleria TaxID=5761 RepID=A0A6A5BQY2_NAEFO)

HSP 1 Score: 204 bits (520), Expect = 9.010e-60
Identity = 95/203 (46.80%), Postives = 142/203 (69.95%), Query Frame = 2

Query:  260 LELNGGSCLAMAGNGCVALAVDRRFGLEGQLVSTEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPITPAALAGLLSTLLYSRRGSPWFVEPIVAGLD-PRGKPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITDEGIETRELTTRMD 865
            LE NGG  +AM G  CVA+A D R+G+  Q V T+ ++  K++ +   G TGL TD+ T  + L   + L +L E +R I P++L+ L+S +LY +R  PWF+EP++AGL+    KP++C QD++GAP   D+FVV+GT +++LYG CE+ +RP ME ++LF V S+CLL+A++RDC+SG+GAVVH+IT + I T+ L  R D
Sbjct:    4 LEYNGGGVVAMTGKNCVAIAADTRYGIRQQTVGTDMQKAFKIHDKCFIGMTGLATDIQTFHEKLKFRMNLYNLKE-ERLIKPSSLSNLVSNMLYEKRFGPWFIEPVIAGLEGDENKPFICAQDLIGAPCYTDNFVVSGTCSEALYGMCESLYRPNMEPDDLFEVVSQCLLAAVDRDCISGWGAVVHVITPDKIITKRLKVRQD 205

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig7161.18269.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig7161.18269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LMS2_ECTSI	1.000e-146	98.18	Proteasome subunit beta n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JNZ3_9PHAE	1.570e-71	84.51	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835YVV6_9STRA	5.180e-69	56.22	Proteasome beta subunit n=1 Tax=Tribonema minus Ta...	[more]
M2W804_GALSU	7.580e-66	53.47	Proteasome subunit beta n=1 Tax=Galdieria sulphura...	[more]
M1V7D3_CYAM1	2.050e-62	50.00	20S core proteasome subunit beta 3 n=2 Tax=cellula...	[more]
A0A3P3Y3V5_PLABS	1.030e-61	48.02	Proteasome subunit beta n=2 Tax=Plasmodiophora bra...	[more]
D2V9R9_NAEGR	1.500e-61	47.29	Proteasome subunit beta n=1 Tax=Naegleria gruberi ...	[more]
A0A7S2XNS4_9STRA	8.000e-61	50.00	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]
A0A7S3K6H9_9STRA	8.730e-60	50.00	Proteasome subunit beta n=1 Tax=Aureoumbra lagunen...	[more]
A0A6A5BQY2_NAEFO	9.010e-60	46.80	Proteasome subunit beta n=3 Tax=Naegleria TaxID=57...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig7161	contig	Ecto-sp13_S_contig7161:3428..6500 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	430.3
Seed ortholog evalue	6.9e-118
Seed eggNOG ortholog	2880.D8LMS2
Preferred name	PBC1
Model size	1494
KEGG ko	ko:K02735,ko:K03660
KEGG Pathway	ko03050,ko03410,map03050,map03410
KEGG Module	M00337,M00340
Hectar predicted targeting category	other localisation
GOs	GO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006508,GO:0006511,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010498,GO:0010499,GO:0010604,GO:0010950,GO:0010952,GO:0012505,GO:0016020,GO:0016504,GO:0019222,GO:0019538,GO:0019774,GO:0019941,GO:0030162,GO:0030163,GO:0030234,GO:0031090,GO:0031323,GO:0031325,GO:0031597,GO:0031984,GO:0032268,GO:0032270,GO:0032991,GO:0034515,GO:0042175,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045862,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0052547,GO:0052548,GO:0060255,GO:0061133,GO:0061134,GO:0061135,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098588,GO:0098772,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
Exons	3
EggNOG free text desc.	threonine-type endopeptidase activity
EggNOG OGs	COG0638@1,KOG0180@2759
Ec32 ortholog description	Nucleophile aminohydrolases, N-terminal
Ec32 ortholog	Ec-02_003440.1
EC	3.4.25.1,4.2.99.18
Cds size	810
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko03400

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463981.4244795-UTR-Ecto-sp13_S_contig7161:3427..4053	1681463981.4244795-UTR-Ecto-sp13_S_contig7161:3427..4053	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig7161 3428..4053 -
1681463981.510977-UTR-Ecto-sp13_S_contig7161:6442..6500	1681463981.510977-UTR-Ecto-sp13_S_contig7161:6442..6500	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig7161 6443..6500 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463981.466607-CDS-Ecto-sp13_S_contig7161:4053..4299	1681463981.466607-CDS-Ecto-sp13_S_contig7161:4053..4299	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7161 4054..4299 -
1681463981.477827-CDS-Ecto-sp13_S_contig7161:4871..5111	1681463981.477827-CDS-Ecto-sp13_S_contig7161:4871..5111	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7161 4872..5111 -
1681463981.5010095-CDS-Ecto-sp13_S_contig7161:6118..6442	1681463981.5010095-CDS-Ecto-sp13_S_contig7161:6118..6442	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7161 6119..6442 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig7161.18269.1	prot_Ecto-sp13_S_contig7161.18269.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig7161 4054..6442 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig7161:3428..6500-
coding sequence from alignment at Ecto-sp13_S_contig7161:3428..6500-

protein sequence of mRNA_Ecto-sp13_S_contig7161.18269.1

>prot_Ecto-sp13_S_contig7161.18269.1 ID=prot_Ecto-sp13_S_contig7161.18269.1|Name=mRNA_Ecto-sp13_S_contig7161.18269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=270bp
MEAKIHHSQHGNGKRVRKGCTAIAHCSDDRRIRHRYLFPTKLTRLIGATM
LVATVALRGGVLASSNPLELNGGSCLAMAGNGCVALAVDRRFGLEGQLVS
TEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPITPA
ALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGKPYLCGQDILGAPVEVDDF
VVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAV
VHLITDEGIETRELTTRMD*

mRNA from alignment at Ecto-sp13_S_contig7161:3428..6500-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig7161.18269.1 ID=mRNA_Ecto-sp13_S_contig7161.18269.1|Name=mRNA_Ecto-sp13_S_contig7161.18269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3073bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7161:3428..6500- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGATCGCCACAAACACAACACAACACGCTTTGGCAAGTCTGTGCACG
CCGGGAGCATGGAAGCAAAAATACATCACAGCCAACATGGCAACGGGAAA
AGAGTTCGAAAGGGTTGCACCGCAATCGCCCACTGCAGCGACGATCGACG
AATAAGACATCGCTACCTTTTTCCAACTAAGCTCACGCGCTTGATCGGCG
CCACCATGCTCGTCGCAACGGTAGCTCTCAGGGGCGGGGTCTTGGCCTCG
TCAAACCCTCTCGAGCTCAACGGGGGGTCTTGCCTCGCTATGGCGGGTAA
CGGTTGCGTGGCGCTGGCGGTGGACCGGCGATTCGGGCTGGAAGGGCAGC
TTGTCTCAACCGAGGCGAAACGCGTGTTGAAGGTGCGGCTTTGGGAGCTG
CACACCTACCTGCTGTTTGGAACACGGCTTCAAGCACACCTTGGTGATGG
GATAGATGTGTCGAGTATTCCGCCAAAGTAGTCGAAGCTCTGGGTGCTCG
AAGTCGATGAAAACAGTACTTTGTGCGGCCTTTGTACAGCACTCACAGCA
CTCGCGAACGCCTACGCGCTGGGAAGGGAAACTTCAGCATCCACAACCTA
ACGAAACAGAGTGTGCGCGGGACTGTCAACTTTGAGCTACACTTCTGTGT
GTGGTTTCAGCTGTTGATGGAGGGTTGCCAACTCTCTTACTCTTGCAGTG
AGCAAGGTGTCCTCACGTTGGGCAACGATAATGAAAGTGGGGCACGTGTA
GGACCACGTCGACAACAGTTGGACAGACCTGATGAAACCAGAGAGAGGTG
TTGAGAAAGGAAGTGAGACCAGGCGAAGGACCAACCTAACACGGCACTGT
GAGCCAACTGGATACCTGGTGCACAGCAGTGCTGTTACATGAACCTTGTT
TGGGTATTGAACGGTTGTTTTGGCGACGACCCTGGTTGTTGCGTGGCGCA
TGCTCTCCTGGAAACATCACGGAGCCGAGCTTTGACCTCGCGTGTCAGCT
ATACCGTAAGAGGCGGAGAGATGACACGGCACCCCCCCGAGACCGACTTT
CCAAGCTCGATTCGATTGCTCCACAACCAAGGGGGGTGCGGAAAGAGGCC
GATACGTCTGCTTCAAGCCGTCGATGCAATGTTTCCAAAACCACCAATTT
TGGTGTCGGGAAAATCTTGGCTATGGAGTAGTCGAGGTCTAGGGGGGTGC
CATCTCGCCGCCTCTTTCGGTGCTCTTTCTCTCTCTCCCTCTCTCGCTCT
CCCCCCCCCCCTCTCTCTCTATTTTGAACCCTAGCAGTCCTCAATCCCGA
TCTCACACACACCACGGCAGCGCACACCTCTAGAACACACTCTCCATTTT
TTTTTCATCCTACAACCTGCGCGCACAACACACACACAGGTCAACGGCCA
ACTACTTTGCGGATTCACGGGGCTGTGGACGGACGTCTTGACAGTGATGC
AGGACCTGTCATCGGAGGTCGCCCTCAAGAGCCTAGCGGAGGCTGACCGC
CCCATCACCCCGGCGGCGCTGGCGGGGCTGCTCTCCACCCTGCTCTACTC
GCGCCGAGGGAGCCCATGGTTCGTGGAGCCGATCGTTGCGGGTCTGGACC
CCCGGGGGAAGCCGTATCTCTGCGGACAGGTGTGTTATGGGCTGCTGGTA
TACTTCAGGCGGGGGTGGGTGGGGGTGGGGGGGCGTGTTTCATGGTTTTT
CATGTTGGTGGAGAGATATTGAATGATGTCGCTGTGGCCCCACGACAGCA
GTGAACGAGCCTCCTAAGTGTCAGGGCCATGGGAAAATGGCGTCTCCGTG
AAGACAAGAGACAGCCTGGGCGCTGTACCCATTTTTTCACATGGTTTTGC
AGTATTTGCACAGCCAGGTTTATCGGCGTGGGTGTGTGATCATAGCCGCC
GCCGTAGGGTTACATGCAGCGTTGTGAGATGCTTCCATCCCTCTTCTAGC
CCAGGAGAAAGGTTTGCCGATCATACCAGGTTTGGAGGGAAGGACTAAGT
CGAATGTTTTTGGTTGGCCTTTTGGGTGAAGCGGTACCATGATACTTGTA
GAACAGAATCATTCAATAACCACATGTCCAGTTGAATTCGCGGGGAAGAC
AGACGATAGTGCCCACAACTCAAACATGCACCATCTGCTTTTGTTTCAAA
ATTTTCTGCAGTCCCTCATCTGACTTGCGCCTGCCCCCCCCCCCCCCACA
GGACATACTTGGAGCCCCCGTAGAAGTGGACGATTTCGTGGTCGCGGGTA
CCTCGGCGCAGTCCCTGTACGGAACCTGTGAGGCTTTTTTTCGGCCGGGG
ATGGAGCGGGAGGAATTGTTTCGGGTGGCTTCCCGCTGCCTGCTGTCGGC
GCTGGAGCGAGACTGCCTGAGCGGGTACGGGGCGGTGGTGCACCTCATCA
CCGACGAGGGCATCGAGACGCGAGAACTTACGACTCGGATGGATTGATCA
ATTCTCCGATAAACAGCGGAGGCGGATTTGGTTTGTTTGTGTTGATTTTG
TTGGGAGCGTGTGCCAGTCGATAGCTATCGTCTGGGAAAATAGGATTGAC
ACACACCCGAGAGTGGCGGTAGACATGGCGTGATTCAAAGATTGGATGCC
GCGGCGGTGCTTTGTGTCGTGTGGTTGATTCGTTTTTACGAAGTATCGGT
GTTTCTTCAATGGCCTGAACGATCGCAACACTGTCTGCGCTTGCCCCACT
CTTCGGCGGAGATCATGACAACACGTACGTATGACCTTTTGGATGGAATC
AGAAGGACCAATCAACGCAAATGACGGGAGGTCTTGTTGATATTTGTTTC
GTCGGTCGCCTTTGCTGTCCAACCGAAGACGGCTCTCCGTGTCGTGCTGT
GTGTTGCCCCAACAACTCGAGGATTCCACCTCAATCGCACACGCACGACG
AATCGGCTATCATGCTTTGATGGATTAGGCCCTACAGCGTTGTGGGAGTC
GATTTGAGCGCACAAATGCAGAGGATATCGGCGGCGTGCCGTCCGGCAGC
TGACTTATTTGGTGTGCTTCTAGGAAGACGCAGGAAATAGCGGTCCGTGC
GTGAGTGGTCCCGGATCGAAAAC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7161:3428..6500-

>mRNA_Ecto-sp13_S_contig7161.18269.1 ID=mRNA_Ecto-sp13_S_contig7161.18269.1|Name=mRNA_Ecto-sp13_S_contig7161.18269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7161:3428..6500- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGCAAAAATACATCACAGCCAACATGGCAACGGGAAAAGAGTTCG
AAAGGGTTGCACCGCAATCGCCCACTGCAGCGACGATCGACGAATAAGAC
ATCGCTACCTTTTTCCAACTAAGCTCACGCGCTTGATCGGCGCCACCATG
CTCGTCGCAACGGTAGCTCTCAGGGGCGGGGTCTTGGCCTCGTCAAACCC
TCTCGAGCTCAACGGGGGGTCTTGCCTCGCTATGGCGGGTAACGGTTGCG
TGGCGCTGGCGGTGGACCGGCGATTCGGGCTGGAAGGGCAGCTTGTCTCA
ACCGAGGCGAAACGCGTGTTGAAGGTCAACGGCCAACTACTTTGCGGATT
CACGGGGCTGTGGACGGACGTCTTGACAGTGATGCAGGACCTGTCATCGG
AGGTCGCCCTCAAGAGCCTAGCGGAGGCTGACCGCCCCATCACCCCGGCG
GCGCTGGCGGGGCTGCTCTCCACCCTGCTCTACTCGCGCCGAGGGAGCCC
ATGGTTCGTGGAGCCGATCGTTGCGGGTCTGGACCCCCGGGGGAAGCCGT
ATCTCTGCGGACAGGACATACTTGGAGCCCCCGTAGAAGTGGACGATTTC
GTGGTCGCGGGTACCTCGGCGCAGTCCCTGTACGGAACCTGTGAGGCTTT
TTTTCGGCCGGGGATGGAGCGGGAGGAATTGTTTCGGGTGGCTTCCCGCT
GCCTGCTGTCGGCGCTGGAGCGAGACTGCCTGAGCGGGTACGGGGCGGTG
GTGCACCTCATCACCGACGAGGGCATCGAGACGCGAGAACTTACGACTCG
GATGGATTGA