mRNA_Ecto-sp13_S_contig716.18268.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig716.18268.1
Unique NamemRNA_Ecto-sp13_S_contig716.18268.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig716.18268.1 vs. uniprot
Match: A0A6H5KM69_9PHAE (PAS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KM69_9PHAE)

HSP 1 Score: 712 bits (1837), Expect = 8.330e-243
Identity = 477/573 (83.25%), Postives = 482/573 (84.12%), Query Frame = 3 
Query:  585 MASSTGDSSNVVGSGFELSRIIEEHRRQDEKRRVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLHSPEDMTGANIFELVAPECHPLLRKIISDNLSRPVKSIGGGAA-------GSWSSAKSLQGGGSADGDGVTGDADEAAGDGEPQCREKKG-NHRERLQQRCRQQQSQPGECGGIGSGGRGGGAPTSSSSLQGPPKMKMLRIFRGDKTTVWCESRLSVRNAKSQDGSSTAAPVPLEIILTLRTVAEGGKTAVAREFAGGQLSMATGPSSVPAGETCIGTGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGTTGGAGKGNHAVVTPSPRGFSGESAKQGPEATGTPKMARAA----EAADPAVGREERSLSKKRQRVSLSNRMDEELSRGXXXXXXXXXXXXXXXXXXXXXXXXXSTTHEGSVSCSNEADSTGEGSNNEGSSKWGDGDGGGGVNAPEGRDSYRHCGNSSEDGDGDVDGVSEEGTSAEGTEFGDDVQTAVQSLILMGGDYSNKAAQ 2267
            MASSTGDSS+VVGSGFELSRIIEEHRRQDEKRRVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLHSPEDMTGANIFELVAPECHPLLRKIISDNLSRPVKSIGGGAA       GSWSSAKSLQG GS              GDGEPQCREKKG NHRER QQRCRQ QSQPGECGGIG+GGRGGGAPTSSS LQGPPKMKMLR+FRGDKTTVWCE RLSVRNAKS DG STAAPVPLEI+LTLRTVAEGGKTAVAREFAGGQLSMATGPSS  AG+ C G    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 PSPRGFSG S KQ PEATGTPKMA AA    EAADPAVGREERSLSKKRQRVSLSNRMDEELS    XXXXXX                  TTHEGSVSCSNEADSTGEG NNEGSSKWGDGDGGGGVNAPEGRDSYR CGNSSEDGD DVDGVSEE TSA  TEFGDDVQ AVQSLILMGGDYSNKAAQ
Sbjct:    1 MASSTGDSSSVVGSGFELSRIIEEHRRQDEKRRVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLHSPEDMTGANIFELVAPECHPLLRKIISDNLSRPVKSIGGGAAAAGRRAAGSWSSAKSLQGEGSXXXXXXXXXXXXXXGDGEPQCREKKGGNHRERPQQRCRQPQSQPGECGGIGNGGRGGGAPTSSS-LQGPPKMKMLRVFRGDKTTVWCEGRLSVRNAKSHDGYSTAAPVPLEIVLTLRTVAEGGKTAVAREFAGGQLSMATGPSSASAGKACAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPRGFSGASVKQEPEATGTPKMAGAAXXXXEAADPAVGREERSLSKKRQRVSLSNRMDEELS---GXXXXXXADKCGEDNSSTGGDTGGFTTHEGSVSCSNEADSTGEGWNNEGSSKWGDGDGGGGVNAPEGRDSYRDCGNSSEDGDRDVDGVSEESTSAGRTEFGDDVQNAVQSLILMGGDYSNKAAQ 569
[Close]
BLAST of mRNA_Ecto-sp13_S_contig716.18268.1 vs. uniprot
Match: A0A835Z3F0_9STRA (PAS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3F0_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.170e-24
Identity = 60/108 (55.56%), Postives = 85/108 (78.70%), Query Frame = 3 
Query:  654 EHRRQDEKRRVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLHSPEDMTGANIFELVAPECHPLLRKIISDNLS 977
            + RR +EK+ +KRAANRKSAS SRARKK +V++MT +NERM+++A +L++LPDL++A+ R G ++YVS AC+ LL  S EDM G ++F LV P+CH  LR +I+D LS
Sbjct:   35 DRRRMEEKKLLKRAANRKSASASRARKKTFVEEMTIENERMRRNAQILALLPDLIVALSRAGAVSYVSGACETLLQRSTEDMRGTSLFALVTPDCHDTLRALIADTLS 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig716.18268.1 vs. uniprot
Match: A0A835Z9B4_9STRA (BZIP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B4_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.230e-22
Identity = 48/93 (51.61%), Postives = 73/93 (78.49%), Query Frame = 3 
Query:  684 VKRAANRKSASTSRARKKAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLHSPEDMTGANIFELVAPECHPLLRKII 962
            +KRAANRKSAS SRARKK +V++M+ +N+RM+++A +L++LPDL++A+CR G ++YVS AC+  L    E+M G ++F+LV PECH  L  ++
Sbjct:    1 LKRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCRRGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGALSLLL 93
[Close]
BLAST of mRNA_Ecto-sp13_S_contig716.18268.1 vs. uniprot
Match: A0A7S4VJ34_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VJ34_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.510e-16
Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = 3 
Query:  645 IIEEHRRQDEKRRVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLHSPEDMTGANIFELVAPECHPLLRKIISD 968
            ++ E RR++EKR  KR ANRKSA TSRARKKA V++MT  N R+++ AL+L++LPDLV+A+   G +T+ S   + +L H  ED+ G+N+ +++ P     LR ++ +
Sbjct:   41 LLAEARRREEKRTAKRVANRKSACTSRARKKALVEEMTRTNARLRRQALILALLPDLVIAITIDGTITFCSAQVERVLRHKEEDLVGSNLNDVLMPLSRGALRHLVKE 148
[Close]
BLAST of mRNA_Ecto-sp13_S_contig716.18268.1 vs. uniprot
Match: A0A7S4W8D6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W8D6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.080e-15
Identity = 48/105 (45.71%), Postives = 73/105 (69.52%), Query Frame = 3 
Query:  654 EHRRQDEKRRVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLHSPEDMTGANIFELVAPECHPLLRKIISD 968
            E RR++EKR  KR ANRKSA TSRARKKA V++MT  N R+++ AL+L++LPDLV+A+   G +T+ S   + +L H  ED+ G+N+ +++ P     LR ++ +
Sbjct:    1 EARRREEKRTAKRVANRKSACTSRARKKALVEEMTRTNARLRRQALILALLPDLVIAITIDGTITFCSAQVERVLRHKEEDLVGSNLNDVLMPLSRGALRHLVKE 105
[Close]
BLAST of mRNA_Ecto-sp13_S_contig716.18268.1 vs. uniprot
Match: A0A7S2UHM5_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHM5_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.270e-15
Identity = 46/108 (42.59%), Postives = 74/108 (68.52%), Query Frame = 3 
Query:  645 IIEEHRRQDEKRRVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLHSPEDMTGANIFELVAPECHPLLRKIISD 968
            ++ + R+++EKR  KR ANRKSA TSRARKKA V++MT  N R+++ A++LS+LPD+V+A+   GE+T+ S   + +L H   D+ GA + +++ P     L ++ SD
Sbjct:  399 LLADARKKEEKRTAKRVANRKSACTSRARKKALVEEMTKTNARLRRQAMILSLLPDMVVAITEDGEITFCSAQVERILRHPVTDLVGAKLTDILVPSSREALDRLTSD 506
[Close]
BLAST of mRNA_Ecto-sp13_S_contig716.18268.1 vs. uniprot
Match: K0SE11_THAOC (PAS domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SE11_THAOC)

HSP 1 Score: 93.2 bits (230), Expect = 1.940e-15
Identity = 47/123 (38.21%), Postives = 82/123 (66.67%), Query Frame = 3 
Query:  645 IIEEHRRQDEKRRVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLHSPEDMTGANIFELVAPECHPLLRKIISDNLSRPVKSIGGGAAG 1013
            ++ + RR+ +KR  KR ANR+SA+TSR RKK  +++MT  N R+++HAL+LS LPD V+++   G++T+ +   + +L H  ED+ GANI +++ P    ++R++I D +    +++G G  G
Sbjct:  338 LLADARRKADKREAKRLANRRSAATSRNRKKMLIEEMTRDNARLRRHALILSYLPDPVVSISLEGDITFCNMQLERVLKHPIEDLIGANIEDIMVPSSRKIVRRLIRDLVIAEQRALGNGEEG 460
[Close]
BLAST of mRNA_Ecto-sp13_S_contig716.18268.1 vs. uniprot
Match: A0A7S2V9B7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V9B7_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.290e-15
Identity = 48/109 (44.04%), Postives = 75/109 (68.81%), Query Frame = 3 
Query:  636 LSRIIEEHRRQDEKRRVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLHSPEDMTGANIFELVAPECHPLLRKII 962
            +S ++ + +R+ +KR  KR ANRKSASTSRARKKAYV +MT  N R+K+ AL+LS+LPD+V+A+  +G++T+ S   + +L     ++ GAN+  L+ P     L ++I
Sbjct:  244 VSLLLADAKRKADKRNAKRIANRKSASTSRARKKAYVQEMTELNARLKRQALILSLLPDMVIAIGESGDITFCSAQVERVLRFDSAELVGANLSNLLVPSSKEKLNRLI 352
[Close]
BLAST of mRNA_Ecto-sp13_S_contig716.18268.1 vs. uniprot
Match: D7FNF3_ECTSI (PAS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNF3_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 3.400e-15
Identity = 46/97 (47.42%), Postives = 68/97 (70.10%), Query Frame = 3 
Query:  684 VKRAANRKSASTSRARKKAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLHSPEDMTGANIFELVAPECHPLLRKIISDNL 974
             KRAANR+SA+T R RKK +V++M   NERM++ A VLS+LPD++LA+ R G +TY S  C+  L  + +++ G NIF+LV    H  LR+++ +NL
Sbjct:   53 AKRAANRRSANTCRLRKKFFVENMADANERMRKRARVLSLLPDMILAMRRDGVITYASENCRQFLQFTRQEVEGTNIFDLVESGSHNRLRRLLEENL 149
[Close]
BLAST of mRNA_Ecto-sp13_S_contig716.18268.1 vs. uniprot
Match: A0A6H5KPQ7_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.370e-14
Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = 3 
Query:  684 VKRAANRKSASTSRARKKAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLHSPEDMTGANIFELVAPECHPLLRKIISDNL 974
             KRAANR+SA+T R RKK +V++M   NERM++ A VLS+LPD++LA+ R G +TY S  C+  L  + +++ G NIF+LV    H  L +++ +NL
Sbjct:   69 AKRAANRRSANTCRLRKKFFVENMADANERMRKRARVLSLLPDMILAMRRDGVITYASENCRQFLQFTRQEVEGTNIFDLVESGSHNRLWRLLEENL 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig716.18268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5KM69_9PHAE8.330e-24383.25PAS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z3F0_9STRA1.170e-2455.56PAS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z9B4_9STRA1.230e-2251.61BZIP domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S4VJ34_9STRA6.510e-1644.44Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A7S4W8D6_9STRA1.080e-1545.71Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2UHM5_9STRA1.270e-1542.59Hypothetical protein n=2 Tax=Attheya septentrional... [more]
K0SE11_THAOC1.940e-1538.21PAS domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S2V9B7_9STRA2.290e-1544.04Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
D7FNF3_ECTSI3.400e-1547.42PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KPQ7_9PHAE3.370e-1446.39PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig716contigEcto-sp13_S_contig716:16906..22136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score95.5
Seed ortholog evalue8.4e-17
Seed eggNOG ortholog159749.K0SE11
Model size3628
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.PAS domain
EggNOG OGs2F6BA@1,2T7D9@2759,2XG1U@2836
Ec32 ortholog descriptionBasic leucine zipper and PAS domain protein
Ec32 orthologEc-20_004910.1
Cds size1686
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig716.18268.1prot_Ecto-sp13_S_contig716.18268.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig716 17842..20695 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463981.315109-UTR-Ecto-sp13_S_contig716:16905..174661681463981.315109-UTR-Ecto-sp13_S_contig716:16905..17466Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig716 16906..17466 +
1681463981.3274698-UTR-Ecto-sp13_S_contig716:17818..178411681463981.3274698-UTR-Ecto-sp13_S_contig716:17818..17841Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig716 17819..17841 +
1681463981.371834-UTR-Ecto-sp13_S_contig716:20695..207661681463981.371834-UTR-Ecto-sp13_S_contig716:20695..20766Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig716 20696..20766 +
1681463981.387705-UTR-Ecto-sp13_S_contig716:20849..221361681463981.387705-UTR-Ecto-sp13_S_contig716:20849..22136Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig716 20850..22136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463981.341713-CDS-Ecto-sp13_S_contig716:17841..178981681463981.341713-CDS-Ecto-sp13_S_contig716:17841..17898Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig716 17842..17898 +
1681463981.3551548-CDS-Ecto-sp13_S_contig716:19066..206951681463981.3551548-CDS-Ecto-sp13_S_contig716:19066..20695Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig716 19067..20695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig716.18268.1

>prot_Ecto-sp13_S_contig716.18268.1 ID=prot_Ecto-sp13_S_contig716.18268.1|Name=mRNA_Ecto-sp13_S_contig716.18268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=562bp
MASSTGDSSNVVGSGFELSRIIEEHRRQDEKRRVKRAANRKSASTSRARK
KAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLH
SPEDMTGANIFELVAPECHPLLRKIISDNLSRPVKSIGGGAAGSWSSAKS
LQGGGSADGDGVTGDADEAAGDGEPQCREKKGNHRERLQQRCRQQQSQPG
ECGGIGSGGRGGGAPTSSSSLQGPPKMKMLRIFRGDKTTVWCESRLSVRN
AKSQDGSSTAAPVPLEIILTLRTVAEGGKTAVAREFAGGQLSMATGPSSV
PAGETCIGTGAPAPAPANADDADREEEAEEEYVEADDDGYQCEVEAAEED
SNNSGSGNDSGTTGGAGKGNHAVVTPSPRGFSGESAKQGPEATGTPKMAR
AAEAADPAVGREERSLSKKRQRVSLSNRMDEELSRGGGGGGGGSADKSGG
DNSSTGGDTGGSTTHEGSVSCSNEADSTGEGSNNEGSSKWGDGDGGGGVN
APEGRDSYRHCGNSSEDGDGDVDGVSEEGTSAEGTEFGDDVQTAVQSLIL
MGGDYSNKAAQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig716:16906..22136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig716.18268.1 ID=mRNA_Ecto-sp13_S_contig716.18268.1|Name=mRNA_Ecto-sp13_S_contig716.18268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig716:16906..22136+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTGCCATTTTGGGGGCTCCGTGGCAAGAAAAGATTCCTAACGTGGCTC
GCACGAAAATTGATGTGTGATTGAGTCGTCGTCATGGTCGTTGGCAATTG
TCAGTGGCGCCACAACATGCACGGGTAGTGGCTTAGTCACTCCTGGCAAT
GTCCACGGAATCACGGCTTCACGGCGCCATCGAACCATCGACCGGGCCCA
ACACCAGCGAACACTGCGAAGAACATCGATCAATCTCCGACCAGGTGGGG
ATTTTGAACCTTTGAACTTTCGAGGAGTAACATTTCCATTCAACATCAAG
GATTCAATAGCCCGGGAATGCTCGAACAGCCTGGTACGTCAGCACGTACT
CTCCCTGCTGGTCGGTGTTGGCCAGAGCCGTCACACATCTCACCTCCGTC
CCGTGCACCAAGCATCTACGTCGGACCCACGTTGGCCAGGTGACGACCAT
CCACGCCTACCTTCAGCTACGCACACGCGTGATCACGCTGTACTCAGCAC
GAGGCCACCCCCCAGGGATCCTCGTTACACGCCTCGCCAGCTCGACAGAA
AGGGAAAGAGGGTGAGCTCCCGACCTTGTTTTTTTTCCTTCCCCTCCCGG
CGTCGGCGAGTTTGTAACTTGTACCCGCTTCTCTCACCCTGGCTCCTTCT
GCGGTTGGTATGGTAGCATAGCAGCGGCTGACAAGGCCAAGGCGACCCCC
TCCGCAGTGCAGAGCACGCGAGAGGCCCCCCGCAACTCTATTGAGAGACC
ACTCACAGCGAGGACGGTAGATTTTTCATGGCGAAGATCACTTCATTTTT
TCAGTTTCACCTTCTTCCCCTCAGAATTGGGCAGGCCGCCTCGTGCTTGG
TCTGATTCAGCAGCCGCTAATCTGGTCCTCCTGTCAAACTTCCTCCATGT
GTGCGCCCAAAAGGTTTTCGTTTTGAGGACGCCGCCATGGCTAGCTCTAC
GGGGGACAGCAGCAATGTTGTCGGCTCGGGTTTCGAACTGTCGGTGAGAG
AGCAATCGTTTTCGTTGGGTGTTGCTGTTGCTGTTACTCTTGGAGGACGA
AAATACTCGTCATTCAGCGCACCTCATGCGTCCCGTAACAGATGCACAAC
ACACATGCTGTTTTTCGTTGCTAGCGTTCTGTGTCGATTTACATACTGCG
AACAAAATAAATGTAGAAGATATGAAACCACGCGCCTACCAGCAATTATC
TGGACATGACAGATCACAAGGCAACGGCCACGCCGCAGCCCCCTGCGCAA
CAGCCGTGGGACTTGTGCGAGAAAGAACATGTCCTTTTCTCTTGGTTGTT
GGTGCGTCGACGTGTACAAAAAAGTTACTGGACTTTTTGGACACGTCGAC
ACCGGTGTGAGGTGGCAGGCGGCAATTTTTTTCTTCCCGATTTCTTGCAC
TGATTTAACGAATCTATATGGGTCTCAGCTGTACACATGGAAGTTCACCG
GCATCTTTTTTTATCAGAAAACTATTGTTCAGTCAGTACATCCACGGGGG
ATATTACTACTGTGGCAGCCGTGCAGAGGTCATCGCAGACAGGTCTTGTG
ACAAGCGTTACATACACGATGTGCATGCTGCTGAAACTCTTCCATTCTTT
TTTTTGTGAACCAGTAGGTAATGCGCGTGGGAGGATTTTGTGACGGACAC
GAAATAGGCATGTTTTTGCGGCGTTTTTTTGATCGCCTTGGGCCAGGCGT
CCGCTCTCTTGACCCAGAGAGATGCAGAGAAGGTGTCCCTACGTACATCA
AATACCTAGAGGTGACGGTGTGTAGACTACAGTTTTTATAGTTCAACACA
CAATGACGACACGGCATGTGACCCAAGTCGTCGGCACTCCTCGTGAGGTG
GCACTAAAAAAGTAGACAAGAGGTCTTGTGCTGCTTGCCGGTTGCCGTGG
TCCTTGGAAGCACCCCTCGTATGACCTCGTACAGCAGTACAGCAGTACTC
CGCCACACCTCATAGCATACCAATTCTCAAGGGAAAGAGGGAAAATCCGA
GACGTGATGCACTACGCTGGAACAAAAAACTCTAACGTGTGCGTTGCTGC
AGCAGCAACTACAAGTGCTGTTGGTCTATTTCGCCGTATTGTCTTGCAAC
GAATTGCTTTCCAACACCCAACTCTAACCCCACCCCCCCGTGCAACCCTC
GGTCTTAGCAGCGAATTATCGAGGAGCACAGGCGCCAGGACGAGAAACGC
CGCGTCAAGCGGGCGGCGAATCGCAAGTCCGCGAGCACGAGCCGCGCGCG
AAAGAAGGCGTACGTGGACGACATGACGGCCAAGAACGAGCGGATGAAGC
AGCACGCCCTGGTCCTGTCGATGCTACCGGACCTCGTCCTCGCCGTGTGC
CGCACCGGCGAGATGACGTACGTCTCACCGGCCTGCCAGTGGCTGCTGCT
GCACTCTCCCGAGGACATGACCGGCGCTAACATCTTCGAGCTCGTCGCGC
CAGAGTGCCACCCGCTTCTGCGCAAGATCATCTCGGACAACCTGTCGCGT
CCGGTCAAGTCCATCGGCGGCGGGGCGGCGGGTAGCTGGTCGTCGGCTAA
ATCATTGCAAGGCGGGGGCTCTGCAGATGGAGACGGGGTGACGGGGGACG
CCGATGAGGCCGCTGGAGACGGTGAGCCGCAGTGCCGTGAGAAAAAGGGG
AACCACAGGGAACGTCTACAGCAGCGGTGTCGACAGCAGCAGTCCCAGCC
GGGGGAATGCGGCGGAATTGGAAGCGGGGGCAGGGGGGGAGGCGCTCCGA
CGTCGTCGTCGTCGTTGCAAGGGCCGCCGAAGATGAAGATGCTCAGAATT
TTCCGAGGCGATAAGACGACGGTGTGGTGCGAGAGCCGGCTGAGCGTGCG
GAACGCCAAGAGTCAAGATGGCAGCAGCACGGCCGCCCCCGTCCCGCTGG
AGATCATTCTCACCCTTCGCACCGTGGCGGAGGGCGGAAAGACGGCCGTA
GCACGCGAGTTCGCGGGCGGCCAGCTTTCCATGGCAACGGGCCCCTCCTC
AGTGCCGGCGGGGGAGACGTGTATTGGTACGGGTGCGCCGGCGCCGGCGC
CGGCGAATGCAGACGATGCGGATCGAGAGGAAGAAGCGGAAGAGGAGTAC
GTGGAGGCAGACGACGACGGCTACCAGTGCGAGGTGGAAGCGGCCGAGGA
AGACAGCAACAACAGCGGCAGCGGGAACGATTCAGGCACGACGGGGGGGG
CTGGCAAGGGAAATCACGCCGTTGTTACACCAAGCCCTCGGGGCTTCAGC
GGTGAAAGCGCCAAGCAGGGGCCCGAGGCGACTGGCACTCCGAAGATGGC
CCGGGCGGCGGAGGCGGCTGACCCCGCGGTTGGCAGGGAAGAGCGGTCGC
TGTCGAAGAAACGGCAACGCGTGAGCCTCAGCAATCGCATGGACGAAGAG
CTGAGCCGCGGCGGAGGCGGCGGTGGCGGTGGCAGCGCGGATAAGTCTGG
CGGGGACAACTCTTCCACCGGGGGAGACACGGGAGGTTCCACCACCCACG
AAGGGAGCGTCTCCTGCAGCAACGAAGCTGACTCGACCGGCGAGGGCTCG
AACAACGAAGGCTCGAGCAAGTGGGGGGATGGGGATGGCGGCGGCGGCGT
GAACGCGCCGGAAGGGAGGGATTCGTATCGGCATTGCGGCAACAGCAGCG
AGGACGGTGACGGGGATGTTGACGGTGTGTCCGAAGAAGGCACTTCGGCG
GAAGGGACGGAGTTCGGAGACGACGTCCAGACCGCGGTTCAGAGTCTCAT
CTTGATGGGGGGCGACTACAGCAACAAGGCGGCTCAATGACGATCACTTC
TCGTCGTTCGTTCGTTCGCTGCTGCTGCTGCTGCTGCTGCTTACATAAGT
TTCTAGGATAGGCCGTTGCTCGTTTGGTGAATCATTCCGTCGAGGAACGC
AGGCGTGTACGTATGCACAAAGGTGTATGTTTTTTCTAGGATAGGCCGTT
GCTCGTTTGGTGAATCATTCCGTCGAGGAACGCAGGCGTGTACGTATGCA
CAAAGGTGTCTGTTTTTCTAACCGTTTTCCAGTTATTCTTGTTCTTTGTA
TGCGGGGTGGATGTTTTTCAGTCAGTCGCCGTTTGCTTTGCTGCCTAGGG
CTAGGAGTGCCTGGGAAGGCTTAGTGGTACGATAGACTGCGGTAGTTGTG
TTTTTCAGAAGATTGCTTCCTTGTTTGCTTGTCTCTCTTTTATCCTTCGT
GTGTTGCCCTGCTGGGGTTGTTTTTGTAAGCAGGCAACGGCCTGGTGTGT
AAGTATTGGAAGCACAATAGAGACGTTTCATTTGGGAAAAACCGTTCGAG
ATTGCAAGCTGAGAGAGGTAAATCCCATCAAATGTAATGCAGGTGATAAT
CGCACCCGGGCACGAGCAGAGAGAGAGTTATCGAGAGGCGTCGTTTTCAT
TTCATGCGAAGAGTGATTTTCCTGGTGCTTCTTGCGAGCATACTTGACCA
ATTTGTTTTCCTGGGAGGTAGGCGTGCGCGCTCCGTCTTTGATTTCATTT
TGTCTGTCCGTGGAAGAAGAGCACGGAAGGCATATTTTCGTAGGGTAGGC
GCACCCACCTAATAGTTACTTGTCCGCTTGTCCACTGACACGTGAAGAGA
TAAAGAGTCAACCATGTAGGTTTTACCTTATATACCAAAAGTAGGTCTTG
CCACAGGGAGCTGCCGATTATACAGAGCAGTAGCGGCTTTACATCTCGGC
CCGCCACGGACGCACACGGCGAGACTCGTTAGTCACGAGGAACACATGCG
GCCTGCTGTTGAGGAATTAGCTTTTTTGTTGCGATGACGGAGCTGGCAAA
TTTCGTGGGCCCGCTGATGTGCATAGCCCCCGCAAGTTTTTTTATGAAGT
TTAGGACTGTTTCATCTGCAACCTCGTCTAGTTTGGGCTGACGAGGAGAG
GTGCCGATGGGGATTGATTGTCGTGTATAGGGTACTCGAGAGTCGAAACG
AAGCTAGCGCGGAGGAAGAGGTGATGAAATGAGCCCATATTTTCAGCTTT
GCATAGGAAGCACACGTGAAGAACCCATGCTTGACACCAAAGATGGCGTC
CCTTGGCGTCTACCTACAGTACATAATGATTGTGTGCGTGTTGTGTACAG
GCGGAGAAGGGTTGGTCGTGGTACCGGATGCGTGTCACCAAGTATCAATT
TATCGTTTCTCTCGCTTGCCGTTCCACGACCGACTGTTGACGACGCCTCT
CGGGATTTCCGTTCTTTGGGAATGGTGGAAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig716:16906..22136+

>mRNA_Ecto-sp13_S_contig716.18268.1 ID=mRNA_Ecto-sp13_S_contig716.18268.1|Name=mRNA_Ecto-sp13_S_contig716.18268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1686bp|location=Sequence derived from alignment at Ecto-sp13_S_contig716:16906..22136+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTAGCTCTACGGGGGACAGCAGCAATGTTGTCGGCTCGGGTTTCGA
ACTGTCGCGAATTATCGAGGAGCACAGGCGCCAGGACGAGAAACGCCGCG
TCAAGCGGGCGGCGAATCGCAAGTCCGCGAGCACGAGCCGCGCGCGAAAG
AAGGCGTACGTGGACGACATGACGGCCAAGAACGAGCGGATGAAGCAGCA
CGCCCTGGTCCTGTCGATGCTACCGGACCTCGTCCTCGCCGTGTGCCGCA
CCGGCGAGATGACGTACGTCTCACCGGCCTGCCAGTGGCTGCTGCTGCAC
TCTCCCGAGGACATGACCGGCGCTAACATCTTCGAGCTCGTCGCGCCAGA
GTGCCACCCGCTTCTGCGCAAGATCATCTCGGACAACCTGTCGCGTCCGG
TCAAGTCCATCGGCGGCGGGGCGGCGGGTAGCTGGTCGTCGGCTAAATCA
TTGCAAGGCGGGGGCTCTGCAGATGGAGACGGGGTGACGGGGGACGCCGA
TGAGGCCGCTGGAGACGGTGAGCCGCAGTGCCGTGAGAAAAAGGGGAACC
ACAGGGAACGTCTACAGCAGCGGTGTCGACAGCAGCAGTCCCAGCCGGGG
GAATGCGGCGGAATTGGAAGCGGGGGCAGGGGGGGAGGCGCTCCGACGTC
GTCGTCGTCGTTGCAAGGGCCGCCGAAGATGAAGATGCTCAGAATTTTCC
GAGGCGATAAGACGACGGTGTGGTGCGAGAGCCGGCTGAGCGTGCGGAAC
GCCAAGAGTCAAGATGGCAGCAGCACGGCCGCCCCCGTCCCGCTGGAGAT
CATTCTCACCCTTCGCACCGTGGCGGAGGGCGGAAAGACGGCCGTAGCAC
GCGAGTTCGCGGGCGGCCAGCTTTCCATGGCAACGGGCCCCTCCTCAGTG
CCGGCGGGGGAGACGTGTATTGGTACGGGTGCGCCGGCGCCGGCGCCGGC
GAATGCAGACGATGCGGATCGAGAGGAAGAAGCGGAAGAGGAGTACGTGG
AGGCAGACGACGACGGCTACCAGTGCGAGGTGGAAGCGGCCGAGGAAGAC
AGCAACAACAGCGGCAGCGGGAACGATTCAGGCACGACGGGGGGGGCTGG
CAAGGGAAATCACGCCGTTGTTACACCAAGCCCTCGGGGCTTCAGCGGTG
AAAGCGCCAAGCAGGGGCCCGAGGCGACTGGCACTCCGAAGATGGCCCGG
GCGGCGGAGGCGGCTGACCCCGCGGTTGGCAGGGAAGAGCGGTCGCTGTC
GAAGAAACGGCAACGCGTGAGCCTCAGCAATCGCATGGACGAAGAGCTGA
GCCGCGGCGGAGGCGGCGGTGGCGGTGGCAGCGCGGATAAGTCTGGCGGG
GACAACTCTTCCACCGGGGGAGACACGGGAGGTTCCACCACCCACGAAGG
GAGCGTCTCCTGCAGCAACGAAGCTGACTCGACCGGCGAGGGCTCGAACA
ACGAAGGCTCGAGCAAGTGGGGGGATGGGGATGGCGGCGGCGGCGTGAAC
GCGCCGGAAGGGAGGGATTCGTATCGGCATTGCGGCAACAGCAGCGAGGA
CGGTGACGGGGATGTTGACGGTGTGTCCGAAGAAGGCACTTCGGCGGAAG
GGACGGAGTTCGGAGACGACGTCCAGACCGCGGTTCAGAGTCTCATCTTG
ATGGGGGGCGACTACAGCAACAAGGCGGCTCAATGA
back to top