mRNA_Ecto-sp13_S_contig716.18267.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig716.18267.1
Unique NamemRNA_Ecto-sp13_S_contig716.18267.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig716.18267.1 vs. uniprot
Match: A0A6H5KCS3_9PHAE (Lipoyl synthase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCS3_9PHAE)

HSP 1 Score: 593 bits (1528), Expect = 3.030e-207
Identity = 291/300 (97.00%), Postives = 295/300 (98.33%), Query Frame = 1
Query:  958 HDQYEELKSSLKELNLHSVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQKPPEPDPFEPFHTAEAISRWGINYVVLTSVDRDDLEDGGANHFATTVELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPYVRDKRAGYDQSLSVLRRAKIAGEATGVYTKTSLMLGLGETEEEILETMRDLREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQGEALGFSYVASGPMVRSSYKAGEFFMENMIRRGRQEVDAVAAAMAVAAGMDPNDR 1857
            H +YEELKSSLKELNLH+VCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQKPPEPDPFEPFHTAEAISRWGINYVVLTSVDRDDLEDGGANHFATTVELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPYVRDKRAGYDQSLSVLRRAKIAGEATGVYTKTSLMLGLGETEEEILETMRDLREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQG+ALGFSYVASGPMVRSSYKAGEFFMENMIRRGRQ  DAVAAAMAVA+ MDPN R
Sbjct:   91 HSKYEELKSSLKELNLHTVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQKPPEPDPFEPFHTAEAISRWGINYVVLTSVDRDDLEDGGANHFATTVELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPYVRDKRAGYDQSLSVLRRAKIAGEATGVYTKTSLMLGLGETEEEILETMRDLREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQGDALGFSYVASGPMVRSSYKAGEFFMENMIRRGRQGEDAVAAAMAVASAMDPNAR 390          
BLAST of mRNA_Ecto-sp13_S_contig716.18267.1 vs. uniprot
Match: A0A835ZC82_9STRA (Lipoyl synthase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC82_9STRA)

HSP 1 Score: 462 bits (1189), Expect = 3.720e-157
Identity = 231/305 (75.74%), Postives = 255/305 (83.61%), Query Frame = 1
Query:  940 AFFPLPHDQYE-----ELKSSLKELNLHSVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQKPPEPDPFEPFHTAEAISRWGINYVVLTSVDRDDLEDGGANHFATTVELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPYVRDKRAGYDQSLSVLRRAKIAGEATGVYTKTSLMLGLGETEEEILETMRDLREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQGEALGFSYVASGPMVRSSYKAGEFFMENMIRRGR----QEVDAVAAAMA 1827
            A+F +P   Y+     +LK SL EL LH+VCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAV TS  PP+PDPFEPFHTA+A+SRWGINYVVLTSVDRDDL DGGA HFA TVELIK A   MLVECLVSDFRGD AAV RLATSGLDVYAHN+ETV RLQ +VRD+RAGY QSL VLR AK A  +  +YTKTSLMLGLGETE E+L+TMRD+REAGVDVLTLGQYLRPTDHHLAVV+YV P KFD Y  QGEA+GF YVASGP+VRSSYKAGEF++E+M+R GR    QE  + AAA A
Sbjct:    7 AWFRVPSPGYDKTKFNDLKQSLSELKLHTVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVNTSATPPKPDPFEPFHTAQAVSRWGINYVVLTSVDRDDLPDGGAGHFALTVELIKEAAPGMLVECLVSDFRGDAAAVARLATSGLDVYAHNVETVERLQAHVRDRRAGYAQSLGVLRAAKAARPS--LYTKTSLMLGLGETEAEVLQTMRDIREAGVDVLTLGQYLRPTDHHLAVVEYVPPHKFDWYREQGEAMGFKYVASGPLVRSSYKAGEFYLEHMVRSGRAAQEQEGGSTAAASA 309          
BLAST of mRNA_Ecto-sp13_S_contig716.18267.1 vs. uniprot
Match: W7T3L4_9STRA (Lipoyl synthase, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3L4_9STRA)

HSP 1 Score: 451 bits (1160), Expect = 9.690e-152
Identity = 220/290 (75.86%), Postives = 245/290 (84.48%), Query Frame = 1
Query:  958 HDQYEELKSSLKELNLHSVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQKPPEPDPFEPFHTAEAISRWGINYVVLTSVDRDDLEDGGANHFATTVELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPYVRDKRAGYDQSLSVLRRAKIAGEATGVYTKTSLMLGLGETEEEILETMRDLREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQGEALGFSYVASGPMVRSSYKAGEFFMENMIRRGRQEVDAVAAAMA 1827
            H ++EEL+ SL+EL+LH+VCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQ PP  DPFEP  TAEA++RWGINYVVLTSVDRDD+ DGGA+HFA TVE IK  K +MLVECLVSDFRGD AAV+RLATSGLDVYAHN+ETV RLQ YVRDKRA Y QSL VL  AK A     VYTKTSLMLGLGE E E+LE MRD+R   VDVLTLGQYLRPTDHHLAVV+YVTPEKFD + +QGE +GF YVASGP+VRSSYKAGEFF+EN ++R + +  A   AMA
Sbjct:   89 HTRFEELRESLRELDLHTVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQAPPPADPFEPLKTAEAVARWGINYVVLTSVDRDDMPDGGADHFAQTVEYIKLRKPEMLVECLVSDFRGDLAAVERLATSGLDVYAHNVETVERLQKYVRDKRASYTQSLQVLAHAKAAQPT--VYTKTSLMLGLGEEEGEVLEAMRDMRAHNVDVLTLGQYLRPTDHHLAVVEYVTPEKFDFFRKQGEEMGFKYVASGPLVRSSYKAGEFFLENELKRVKAKRAAEQGAMA 376          
BLAST of mRNA_Ecto-sp13_S_contig716.18267.1 vs. uniprot
Match: A0A7S4VVM7_9STRA (Lipoyl synthase, mitochondrial n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VVM7_9STRA)

HSP 1 Score: 434 bits (1115), Expect = 1.420e-144
Identity = 204/288 (70.83%), Postives = 243/288 (84.38%), Query Frame = 1
Query:  949 PLPHDQ----YEELKSSLKELNLHSVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQKPPEPDPFEPFHTAEAISRWGINYVVLTSVDRDDLEDGGANHFATTVELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPYVRDKRAGYDQSLSVLRRAKIAGEATGVYTKTSLMLGLGETEEEILETMRDLREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQGEALGFSYVASGPMVRSSYKAGEFFMENMIRRGRQE 1800
            P P  Q    Y E+KSSL +LNLH+VCEEAQCPNIGECWNGGTGTIMLLGDTCTRGC FCAV T  KPP PDPFEPF TAEA+++WG++Y+VLTSVDRDD+ DGGA+HF TTVEL+K  K  +LVECLVSDF+GD  +V+ LA SGLDVYAHN+ETVRRLQ +VRD RAGYDQSLS L+ AK A    G+YTKTS+MLGLGET+EE+++TM+DLRE  VDV+T GQYLRPT++HL+VV+YVTPEKFD + + GE +GF YVASGPMVRSSYKAGEF++++MI + R E
Sbjct:  107 PAPSQQEKSRYSEVKSSLADLNLHTVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCMFCAVNTDSKPPPPDPFEPFKTAEAVTQWGVDYIVLTSVDRDDIPDGGASHFGTTVELLKAKKPSLLVECLVSDFQGDLNSVETLACSGLDVYAHNVETVRRLQKFVRDPRAGYDQSLSTLKHAKEA--KPGLYTKTSIMLGLGETDEEVIQTMKDLREIDVDVVTFGQYLRPTENHLSVVEYVTPEKFDHFRKVGEEMGFKYVASGPMVRSSYKAGEFYLKHMISKERAE 392          
BLAST of mRNA_Ecto-sp13_S_contig716.18267.1 vs. uniprot
Match: B8BQ31_THAPS (Lipoyl synthase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQ31_THAPS)

HSP 1 Score: 423 bits (1087), Expect = 9.960e-142
Identity = 198/279 (70.97%), Postives = 238/279 (85.30%), Query Frame = 1
Query:  964 QYEELKSSLKELNLHSVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQKPPEPDPFEPFHTAEAISRWGINYVVLTSVDRDDLEDGGANHFATTVELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPYVRDKRAGYDQSLSVLRRAKIAGEATGVYTKTSLMLGLGETEEEILETMRDLREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQGEALGFSYVASGPMVRSSYKAGEFFMENMIRRGRQE 1800
            +Y+++K SL  L+L++VCEEAQCPNIGECWNGGTGTIMLLGDTCTRGC FCAVKT QKPPEPDPFEPF TAEA+++WG++Y+VLTSVDRDD+ DGGA HFATTVEL+K A   +LVECLVSDF+GD  +V  LATSGLDVYAHN+ETV RLQ YVRD RAGY QS++ LR AK A     +YTKTSLMLGLGET++E+++TM+DLR   VDV+T GQYLRPT++HL+VV+YVTPEKFD +   GE LGF YVASGP+VRSSYKAGEF++ +MI + R+E
Sbjct:   30 RYQQVKESLSTLSLNTVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCMFCAVKTDQKPPEPDPFEPFKTAEAVTKWGVDYIVLTSVDRDDIPDGGAQHFATTVELLKQANPSLLVECLVSDFQGDSKSVATLATSGLDVYAHNVETVERLQKYVRDARAGYWQSINTLRDAKRA--QPDLYTKTSLMLGLGETDDEVIQTMKDLRSVDVDVVTFGQYLRPTENHLSVVEYVTPEKFDHFREIGEELGFKYVASGPLVRSSYKAGEFYLTHMINKEREE 306          
BLAST of mRNA_Ecto-sp13_S_contig716.18267.1 vs. uniprot
Match: A0A0G4EX03_VITBC (Lipoyl synthase, mitochondrial n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EX03_VITBC)

HSP 1 Score: 424 bits (1091), Expect = 1.210e-141
Identity = 204/290 (70.34%), Postives = 242/290 (83.45%), Query Frame = 1
Query:  958 HDQYEELKSSLKELNLHSVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQKPPEPDPFEPFHTAEAISRWGINYVVLTSVDRDDLEDGGANHFATTVELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPYVRDKRAGYDQSLSVLRRAKIAGEATGVYTKTSLMLGLGETEEEILETMRDLREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQGEALGFSYVASGPMVRSSYKAGEFFMENMIRRGRQEVDAVAAAMA 1827
            + ++EELK SL++L LH+VCEEAQCPNIGECWNGGT TIMLLGDTCTRGC+FCAV TS +PP PDP EP +TA AIS+WG++Y+VLTSVDRDD+ DGGA+HFA TVE +K A   +LVECLVSDF+GD  AV+RLATSGLDVYAHN+ETV RLQ +VRDKRA Y QSL VLR+AK A     VYTKTSLMLGLGETE+E+++TM+DLR+   DV+T GQYLRPTDHHL+VV+Y+TP+KF +Y R GE +GF YVASGP+VRSSYKAGE+FM NMI   R   D  AAA+A
Sbjct:   71 YTRFEELKDSLRDLKLHTVCEEAQCPNIGECWNGGTATIMLLGDTCTRGCRFCAVNTSPEPPAPDPDEPLNTATAISQWGVDYIVLTSVDRDDMADGGADHFARTVEFLKAASPHILVECLVSDFQGDKEAVERLATSGLDVYAHNVETVERLQRFVRDKRANYKQSLDVLRQAKEAEPR--VYTKTSLMLGLGETEDEVIQTMKDLRDIDCDVITFGQYLRPTDHHLSVVEYITPDKFAKYGRLGEEMGFRYVASGPLVRSSYKAGEYFMTNMINTDR---DNEAAAVA 355          
BLAST of mRNA_Ecto-sp13_S_contig716.18267.1 vs. uniprot
Match: A0A7S3RYP2_9SPIT (Lipoyl synthase, mitochondrial n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RYP2_9SPIT)

HSP 1 Score: 422 bits (1084), Expect = 2.450e-141
Identity = 207/289 (71.63%), Postives = 232/289 (80.28%), Query Frame = 1
Query:  958 HDQYEELKSSLKELNLHSVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQKPPEPDPFEPFHTAEAISRWGINYVVLTSVDRDDLEDGGANHFATTVELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPYVRDKRAGYDQSLSVLRRAK--IAGEATGVYTKTSLMLGLGETEEEILETMRDLREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQGEALGFSYVASGPMVRSSYKAGEFFMENMIRRGRQEVDAVAA 1818
            H ++ EL+SSL +L L++VCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAV T   PP PDP EPF+TA A+ +WGI+YVVLTSVDRDDL DGGA HFA TV  +K  K  +LVECLVSDF GD  A+  LA SGLDVYAHN+ETVRRLQ YVRD+RAGYDQSL  L  AK   A E   +YTKTSLMLGLGET+EE+L  MRD+R A VDVLTLGQYLRPTDHHLAVV+YVTPE FD+    GE +GF YVASGPMVRSSYKAGEFFM+NMI+     V+A  A
Sbjct:   18 HTRFNELQSSLSQLKLNTVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVNTDSTPPPPDPDEPFNTAAAVVQWGIDYVVLTSVDRDDLPDGGAGHFAKTVRTLKDLKPGILVECLVSDFAGDQEAIRTLALSGLDVYAHNVETVRRLQSYVRDRRAGYDQSLQGLAAAKKMAAAEGRRLYTKTSLMLGLGETKEEVLAAMRDMRAADVDVLTLGQYLRPTDHHLAVVEYVTPEVFDELRVAGEEMGFRYVASGPMVRSSYKAGEFFMQNMIKADGGAVEATVA 306          
BLAST of mRNA_Ecto-sp13_S_contig716.18267.1 vs. uniprot
Match: A0A1E7F4Q0_9STRA (Lipoyl synthase, mitochondrial n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4Q0_9STRA)

HSP 1 Score: 420 bits (1080), Expect = 6.900e-141
Identity = 198/282 (70.21%), Postives = 236/282 (83.69%), Query Frame = 1
Query:  952 LPHDQYEELKSSLKELNLHSVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQKPPEPDPFEPFHTAEAISRWGINYVVLTSVDRDDLEDGGANHFATTVELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPYVRDKRAGYDQSLSVLRRAKIAGEATGVYTKTSLMLGLGETEEEILETMRDLREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQGEALGFSYVASGPMVRSSYKAGEFFMENMIRRGRQ 1797
            L   +Y E+K+SL++LNL++VCEEAQCPNIGECW+GGTGTIMLLGDTCTRGC FCAVKT   PP PDPFEPF TAEA+++WG+NY+VLTSVDRDD+ DGGA HFA TVEL+K  K ++LVECLVSDF+GD  +V  LATSGLDVYAHNIETV RLQ ++RD +AGY QSLS L  AK A    G+YTKTS+MLGLGETE+E+L+TM+DLR   VDV+T GQYLRPT+HHL+VV+YV PE FD Y + GE +GF YVASGPMVRSSYKAGEF++E+MI   R+
Sbjct:    2 LKDSRYTEVKNSLEDLNLNTVCEEAQCPNIGECWSGGTGTIMLLGDTCTRGCMFCAVKTDTAPPPPDPFEPFKTAEAVAKWGVNYIVLTSVDRDDIPDGGAQHFAHTVELLKHKKEELLVECLVSDFQGDLDSVATLATSGLDVYAHNIETVERLQKFIRDPKAGYQQSLSTLEHAKKA--KPGLYTKTSVMLGLGETEKEVLQTMKDLRAIDVDVVTFGQYLRPTEHHLSVVEYVKPEMFDYYRKVGEDMGFKYVASGPMVRSSYKAGEFYLEHMITTDRE 281          
BLAST of mRNA_Ecto-sp13_S_contig716.18267.1 vs. uniprot
Match: LIPA2_PHATC (Lipoyl synthase 2, mitochondrial n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=LIPA2_PHATC)

HSP 1 Score: 421 bits (1081), Expect = 9.230e-141
Identity = 196/281 (69.75%), Postives = 235/281 (83.63%), Query Frame = 1
Query:  958 HDQYEELKSSLKELNLHSVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQKPPEPDPFEPFHTAEAISRWGINYVVLTSVDRDDLEDGGANHFATTVELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPYVRDKRAGYDQSLSVLRRAKIAGEATGVYTKTSLMLGLGETEEEILETMRDLREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQGEALGFSYVASGPMVRSSYKAGEFFMENMIRRGRQE 1800
            + +Y ++K SL++L+LH+VCEEAQCPNIGECWNGGTGTIMLLGDTCTRGC FCAV T  KPP PDPFEPF TAEA+  WG++Y+VLTSVDRDD+ DGGA HFA TV+L+K  K ++LVECLVSDF+G   +V+ LA SGLDVYAHN+ETV RLQP+VRD RA Y QSLS L+ AK+      +YTKTS+MLGLGETEEE+ +TM DLR  GVDV+T GQYLRPT+HHL+VV+YVTPEKFD Y + GE +GF YVASGPMVRSSYKAGEF++E+MI++ R E
Sbjct:   27 YSRYAQVKDSLQKLDLHTVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCMFCAVNTDSKPPPPDPFEPFKTAEAVVAWGVDYIVLTSVDRDDIADGGAQHFAQTVQLLKQNKPNLLVECLVSDFQGMLDSVETLALSGLDVYAHNVETVERLQPFVRDARANYQQSLSTLQHAKVVKPE--LYTKTSIMLGLGETEEEVTQTMTDLRAIGVDVVTFGQYLRPTEHHLSVVEYVTPEKFDHYRQVGENMGFKYVASGPMVRSSYKAGEFYLEHMIKKERTE 305          
BLAST of mRNA_Ecto-sp13_S_contig716.18267.1 vs. uniprot
Match: A0A7S2UUF0_9STRA (Lipoyl synthase, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUF0_9STRA)

HSP 1 Score: 423 bits (1087), Expect = 1.190e-140
Identity = 203/282 (71.99%), Postives = 234/282 (82.98%), Query Frame = 1
Query:  958 HDQYEELKSSLKELNLHSVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQKPPEPDPFEPFHTAEAISRWGINYVVLTSVDRDDLEDGGANHFATTVELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPYVRDKRAGYDQSLSVLRRAKIAGEATG--VYTKTSLMLGLGETEEEILETMRDLREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQGEALGFSYVASGPMVRSSYKAGEFFMENMIRRGRQ 1797
            H  + +L+ SLK+L L++VCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAV TS  P    P EPFHTAEA+++WGI YVVLTSVDRDDL DGGA HFA TVE +K  +  +LVECLVSDF GD ++V+ LA SGLDVYAHN+ETVRRLQ +VRDKRA YDQSL VL+ AK   +  G  +YTKTSLMLGLGETEEE+++ MRDLR A VDV+T GQYLRPT+HHLAVV+YV P+KFD Y R GE +GF YVASGPMVRSSYKAGEFFME+MI+ GR+
Sbjct:  100 HTHFNKLQQSLKDLKLNTVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVSTSPTPXXXXPQEPFHTAEAVAQWGITYVVLTSVDRDDLPDGGAGHFAQTVEFLKLRQPGILVECLVSDFAGDLSSVETLALSGLDVYAHNVETVRRLQGFVRDKRAEYDQSLKVLKHAKQVAQKDGRDLYTKTSLMLGLGETEEEVIQCMRDLRAADVDVVTFGQYLRPTEHHLAVVEYVHPDKFDNYRRIGEEMGFKYVASGPMVRSSYKAGEFFMEHMIKTGRK 381          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig716.18267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCS3_9PHAE3.030e-20797.00Lipoyl synthase, mitochondrial n=2 Tax=Ectocarpus ... [more]
A0A835ZC82_9STRA3.720e-15775.74Lipoyl synthase, mitochondrial n=1 Tax=Tribonema m... [more]
W7T3L4_9STRA9.690e-15275.86Lipoyl synthase, mitochondrial n=2 Tax=Monodopsida... [more]
A0A7S4VVM7_9STRA1.420e-14470.83Lipoyl synthase, mitochondrial n=2 Tax=Ditylum bri... [more]
B8BQ31_THAPS9.960e-14270.97Lipoyl synthase (Fragment) n=1 Tax=Thalassiosira p... [more]
A0A0G4EX03_VITBC1.210e-14170.34Lipoyl synthase, mitochondrial n=2 Tax=Vitrella br... [more]
A0A7S3RYP2_9SPIT2.450e-14171.63Lipoyl synthase, mitochondrial n=1 Tax=Strombidino... [more]
A0A1E7F4Q0_9STRA6.900e-14170.21Lipoyl synthase, mitochondrial n=1 Tax=Fragilariop... [more]
LIPA2_PHATC9.230e-14169.75Lipoyl synthase 2, mitochondrial n=2 Tax=Phaeodact... [more]
A0A7S2UUF0_9STRA1.190e-14071.99Lipoyl synthase, mitochondrial n=1 Tax=Fibrocapsa ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig716contigEcto-sp13_S_contig716:14074..16820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score603.6
Seed ortholog evalue6.6e-170
Seed eggNOG ortholog2880.D7FSB7
Preferred namelipA
Model size1860
KEGG rclassRC01978
KEGG koko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,map00785,map01100
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.lipoate synthase activity
EggNOG OGsCOG0320@1,KOG2672@2759
Ec32 ortholog descriptionElongator protein 3/MiaB/NifB
Ec32 orthologEc-20_004920.1
EC2.8.1.8
Cds size1185
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463981.232625-CDS-Ecto-sp13_S_contig716:14073..143701681463981.232625-CDS-Ecto-sp13_S_contig716:14073..14370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig716 14074..14370 -
1681463981.2482393-CDS-Ecto-sp13_S_contig716:14586..147931681463981.2482393-CDS-Ecto-sp13_S_contig716:14586..14793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig716 14587..14793 -
1681463981.265083-CDS-Ecto-sp13_S_contig716:15199..153761681463981.265083-CDS-Ecto-sp13_S_contig716:15199..15376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig716 15200..15376 -
1681463981.2772603-CDS-Ecto-sp13_S_contig716:15641..161451681463981.2772603-CDS-Ecto-sp13_S_contig716:15641..16145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig716 15642..16145 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463981.286968-UTR-Ecto-sp13_S_contig716:16145..168201681463981.286968-UTR-Ecto-sp13_S_contig716:16145..16820Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig716 16146..16820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig716.18267.1prot_Ecto-sp13_S_contig716.18267.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig716 14074..16145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig716.18267.1

>prot_Ecto-sp13_S_contig716.18267.1 ID=prot_Ecto-sp13_S_contig716.18267.1|Name=mRNA_Ecto-sp13_S_contig716.18267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=395bp
MPPCLYVSSTFKHARMGLVRRCADATSRLASDNEAVRPTGTAGSCRIGSI
TFTQTNPGAFVRPTGTASSCGIGSITFAQTTLPARHALAFFPLPHDQYEE
LKSSLKELNLHSVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVK
TSQKPPEPDPFEPFHTAEAISRWGINYVVLTSVDRDDLEDGGANHFATTV
ELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPY
VRDKRAGYDQSLSVLRRAKIAGEATGVYTKTSLMLGLGETEEEILETMRD
LREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQGEALGFSYVAS
GPMVRSSYKAGEFFMENMIRRGRQEVDAVAAAMAVAAGMDPNDR*
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mRNA from alignment at Ecto-sp13_S_contig716:14074..16820-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig716.18267.1 ID=mRNA_Ecto-sp13_S_contig716.18267.1|Name=mRNA_Ecto-sp13_S_contig716.18267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig716:14074..16820- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCACAGCACAGACAAACAGGCCGGTGGTTGGCTGGGGCTAGTGTAAGC CGTGACGGGAGGAGGCTTTGAAAATGCGGTCGAAGCTTCCTTCTGCGGTA GCAGCTTTGGCCATTACTTGTGCTTCGTGTGAAGCTTTCCATTTGCCCCC AAGTAGCGGTAGAAGTTTGTGCATACTATCTGTCGCAGAGGCCAGCGGCA GCAGCAGCGGCAGCAGCAGCATGCCGACAACCGAGGTCGATGGTCCCACG CAGACTATTTATCCTGGACCTGTTTTACCGAGAGTAGGTGGGGCGATGCC AGAGCAGCGGCCGGGATGGTTCAGGGTGCCTGCCCCTGGGGGGAAACATA CCAAGGTCGGTCTAACGATGGATACAGCACCAGTACGGCAGTGACGGTGG GCGCCAAGGTGCAAGCGCGAGGGCTTGCGTTGCTGACGTTTACTGGTGTG TTTTCCCGTTTCATTTTGGAAGTTCTGGCTGTGTAGTTAGCTGCGTTTTC TGCACTTCATGGTAGGTTCATCTTCGTGTCGCACACCTTGTCTACTTTCC CCCCGGTCTAGGTAGACGCCAAAACCTCTCTGAGTTACGACACTCCTACA AAATGCATACGCCTCGTGTGACGCGTCTTTTTGTATACATTCGGCGAATT CGAGGTTCCCGGAGAACCAACTGCCATGCCACCTTGTTTGTATGTCTCGT CCACATTCAAACACGCTCGAATGGGTCTTGTCCGTCGGTGTGCTGATGCC ACATCAAGGTTGGCATCAGACAACGAAGCAGTTCGCCCTACAGGCACAGC AGGGAGTTGTAGAATTGGTAGCATAACCTTCACACAAACAAACCCTGGTG CTTTTGTTCGCCCTACAGGCACAGCAAGCAGTTGTGGAATTGGTAGCATA ACCTTCGCACAAACAACCCTGCCCGCTCGCCACGCGCTTGCCTTCTTTCC TTTGCCTCATGATCAGTACGAAGAGCTCAAGTCCTCGCTGAAAGAGCTCA ACCTGCACTCCGTGTGCGAAGAGGCCCAGTGCCCCAACATTGGAGAATGC TGGAACGGGGGCACGGGCACCATCATGCTGCTGGGGGACACTTGCACAAG GGGTTGCAAGTTTTGCGCGGTTAAGACGTCGCAGAAGCCGCCGGAGCCGG ACCCGTTTGAGCCATTCCACACGGCAGAGGTTCGGTTAGCTCCATACGTG TTGTTTTGAGGGGTTGCTCGCGCGCTCGGCCCCTTTTTTCTCGCCGGTGT TCTTGCCCACTTAGTCTACGTAGTTTTTGGTTTGTCCGGCAGATATGTCG AGCGCACACTCTCCAGAGCAAGCTGTGTCGAGGGGGTGCTCGTGGTATGG CCAGGCATCGTCTTGTTCGATACATGTGCAAGTGTATGTGTACCAGCTCA TGCATGGCATCCTCTTGCACGGAACGTGAACCTATTAACAACAGGCAATC TCCAGATGGGGAATCAACTACGTCGTGCTGACCTCAGTAGATCGTGACGA CCTTGAGGATGGCGGGGCTAACCACTTCGCTACCACGGTTGAGCTCATCA AAACCGCGAAGTCGGACATGCTGGTAGAGTGCCTGGTCAGCGACTTCAGA GGGGACTACGCGGCCGTCGACGTGAGATAGCGATGTGGACAGCACGAATC CATGCGCACCGCTTGTCGCCGGAAGCCGGAAGAGCATCCGATGCCATCGC GTTACGTGGACAGCTGTTTCAGACAAGATTGGCCAGAAATAGACCAGACT CATCACGTGTCTGCTCCCTTTTCACATGTTTTTGCCACGTGGAAGGCCTG GCCGTCGGCTGGTACTTGTACCGGCGGCATTGTTTTTTTCTTGTTTGGTA GTGCCTAGCTCCACAGCAGCTGCCGTCGGCAAGGACACGCCTCACGATTC AAGCAGACGATATTCCGTCAGGAACTAGCGCCAACATGGGAGCTCATGTA TCACGTCCAACTATGTTCGGAATGTTTGTACCTTGTGCGTATCTTGTTCT GTGATTCCTCCCCCCCTTTGACCACAGAGGCTAGCGACGTCCGGCCTGGA CGTGTACGCGCACAACATCGAGACGGTCAGACGGTTACAGCCCTACGTCC GCGACAAGAGGGCGGGCTATGACCAGTCTTTGTCTGTGCTCCGTAGGGCC AAAATTGCCGGGGAAGCCACGGGTGTGTACACCAAGACTTCCCTCATGCT GGGGCTAGGAGAGACGGAGGAGGAGATATTGGAGGTAGGGGTGTTCAGTT GAGATGGGCTTGTCTTCACGTTCGAAGTAGCACATTTTCCAGCATTTCCA AATTCAGTCTCCACAGGCTCTGTAGAAACTCAGGAAATAAGTAAATGCGA AGATACCCTGTGGCATCGCCAACGGTTGGATGCGACTTTCTGCCTTCATG TTTCCTAACCCCCAGAATTCCCCACAAACCTTGTCATTGCTTGTACCCAG ACCATGCGAGATCTCCGGGAAGCCGGTGTGGACGTGCTGACGCTGGGCCA ATACCTACGGCCAACGGACCACCACTTGGCAGTTGTCGACTACGTTACGC CCGAGAAGTTCGACCAGTACGCACGGCAAGGGGAAGCGCTAGGCTTTAGT TATGTTGCCAGCGGACCGATGGTGCGCTCGTCCTACAAGGCTGGCGAGTT TTTCATGGAGAACATGATTCGCCGAGGTCGACAAGAGGTGGATGCCGTGG CAGCTGCGATGGCGGTTGCCGCAGGGATGGATCCGAATGACCGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig716:14074..16820-

>mRNA_Ecto-sp13_S_contig716.18267.1 ID=mRNA_Ecto-sp13_S_contig716.18267.1|Name=mRNA_Ecto-sp13_S_contig716.18267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1185bp|location=Sequence derived from alignment at Ecto-sp13_S_contig716:14074..16820- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCACCTTGTTTGTATGTCTCGTCCACATTCAAACACGCTCGAATGGG
TCTTGTCCGTCGGTGTGCTGATGCCACATCAAGGTTGGCATCAGACAACG
AAGCAGTTCGCCCTACAGGCACAGCAGGGAGTTGTAGAATTGGTAGCATA
ACCTTCACACAAACAAACCCTGGTGCTTTTGTTCGCCCTACAGGCACAGC
AAGCAGTTGTGGAATTGGTAGCATAACCTTCGCACAAACAACCCTGCCCG
CTCGCCACGCGCTTGCCTTCTTTCCTTTGCCTCATGATCAGTACGAAGAG
CTCAAGTCCTCGCTGAAAGAGCTCAACCTGCACTCCGTGTGCGAAGAGGC
CCAGTGCCCCAACATTGGAGAATGCTGGAACGGGGGCACGGGCACCATCA
TGCTGCTGGGGGACACTTGCACAAGGGGTTGCAAGTTTTGCGCGGTTAAG
ACGTCGCAGAAGCCGCCGGAGCCGGACCCGTTTGAGCCATTCCACACGGC
AGAGGCAATCTCCAGATGGGGAATCAACTACGTCGTGCTGACCTCAGTAG
ATCGTGACGACCTTGAGGATGGCGGGGCTAACCACTTCGCTACCACGGTT
GAGCTCATCAAAACCGCGAAGTCGGACATGCTGGTAGAGTGCCTGGTCAG
CGACTTCAGAGGGGACTACGCGGCCGTCGACAGGCTAGCGACGTCCGGCC
TGGACGTGTACGCGCACAACATCGAGACGGTCAGACGGTTACAGCCCTAC
GTCCGCGACAAGAGGGCGGGCTATGACCAGTCTTTGTCTGTGCTCCGTAG
GGCCAAAATTGCCGGGGAAGCCACGGGTGTGTACACCAAGACTTCCCTCA
TGCTGGGGCTAGGAGAGACGGAGGAGGAGATATTGGAGACCATGCGAGAT
CTCCGGGAAGCCGGTGTGGACGTGCTGACGCTGGGCCAATACCTACGGCC
AACGGACCACCACTTGGCAGTTGTCGACTACGTTACGCCCGAGAAGTTCG
ACCAGTACGCACGGCAAGGGGAAGCGCTAGGCTTTAGTTATGTTGCCAGC
GGACCGATGGTGCGCTCGTCCTACAAGGCTGGCGAGTTTTTCATGGAGAA
CATGATTCGCCGAGGTCGACAAGAGGTGGATGCCGTGGCAGCTGCGATGG
CGGTTGCCGCAGGGATGGATCCGAATGACCGCTAG
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